Shallow, hypertrophic Lake Sobygard is characterized by strong fluctuations in the plankton community structure over short time scales, and cascading predation effects from higher to lower trophic levels. We examined the coupling between the classical and microbial food web for a 1 month period, during which the typical zooplankton summer succession from rotifers (mainly Brachionus spp.) to cyclopoid copepods and daphnids occurred. In addition to the analysis of the plankton succes- sion, we performed mesocosm experiments, comparing the microbial community structure in treat- ments with and without metazooplankton. We focused on the development of different functional groups within the microbial food web: total heterotrophic bacteria, filamentous bacteria (as grazing- resistant forms), prokaryotic and eukaryotic, autotrophic picoplankton (pAPP and eAPP), hetero- trophic nanoflagellates (HNF) and ciliates. During the first experiment, the metazooplankton was dominated by rotifers which exerted only moderate top-down control on small ciliates, HNF and APP. Cascading predation effects were visible after the collapse of the rotifer population; enhanced protozoan grazing resulted in a decrease in single-celled bacteria and an increase in filamentous bacteria. During the second experiment, characterized by dominance of Cyclops vicinus, strong alter- ations in the microbial food web structure occurred. The most obvious effects were an efficient predation control of planktonic ciliates by copepods and a shift of the picoplankton towards fila- mentous bacteria and a very high biomass of pAPP, which we interpret as a result of enhanced protozoan grazing pressure on bacterioplankton. After the peak in cyclopoids, Daphnia spp. became the dominant zooplankton taxa which resulted in the well known strong predation effects on all microbial components. The two experiments confirm that metazooplankton species composition is an important structuring factor for the microbial food web. Two functional groups deserve special attention: filamentous bacteria and pAPP. Filamentous bacteria, which attained nearly 50% of total heterotrophic bacterial biomass during the second period, seem to be a sensitive indicator of the overall planktonic food web structure and showed significant responses in the enclosures. With a special staining procedure, we analysed the abundance of filamentous bacteria in Lugol-fixed samples collected since 1984 during periods when either daphnids, cyclopoids or rotifers dominated the meta- zooplankton community. On average, high abundance of filaments was always associated with Cyclops-dominated situations, low numbers with Daphnia dominance and high, but rather variable numbers with rotifer dominance. A general close correlation of pAPP with filamentous bacteria might indicate that pAPP also possess a reduced edibility for protozoans.