Plankton Community Research Articles

Unraveling ecological signals related to the MECO onset through planktic and benthic foraminiferal records along a mixed carbonate-siliciclastic shallow-water succession

The shallow-water Capo Mortola succession (Liguria, NW Italy) yields diverse assemblages of smaller benthic and planktic foraminifera, larger benthic foraminifera (LBF), and calcareous nannofossils. With the aim of improving the understanding of the Middle Eocene Climatic Optimum (MECO) impact on the shallow-water marine biotic communities due to global warming, we provide biostratigraphic and stable isotope data to achieve a reliable stratigraphic constraint of the MECO. The correlation of the stable isotope oxygen data with datasets of similar age from other regions suggests that only the onset of the MECO interval is recorded in the Capo Mortola section. Quantitative analyses of smaller benthic foraminiferal assemblages indicate that the shallow-water setting of Capo Mortola was not particularly affected by the onset of the MECO perturbance because no variation in nutrient supply or oxygen level were detected. A different scenario is recorded by the LBF genera Operculina and Discocyclina, which increased in abundance across the MECO onset, probably due to a rise in temperature and adapting to the increase in nutrient supply. In the upper water column, the variations in calcareous plankton communities appear to be controlled by both the MECO warming and a moderate increase in eutrophic conditions related to the enhanced hydrological cycle. Nutrients, mostly consumed in the upper water column, reached the seafloor in a limited amount, as benthic foraminifera record a meso-oligotrophic environment across the studied MECO interval.

Decadal trends and dynamics in the abundance and biomass of marine branchiopods in the southern part of the North Sea

Time-series are fundamental for enhancing our comprehension of plankton community dynamics and forecasting future changes that could significantly affect entire marine food chains and ecosystems. In this study, we investigated spatial and temporal variations in occurrence, abundance and body size of marine branchiopods in the Belgian Part of the North Sea (BPNS), using both traditional microscopy, as well as digital imaging (ZooSCAN). We studied the population dynamics of branchiopods collected between 2014 and 2021 in the BPNS and compared these results with a previously collected (2009–2010) dataset for the same area. The time series showed no significant changes in abundance (Podon spp., Evadne nordmanni) over the years, but we did observe a pronounced seasonal pattern, with both species completely absent in the winter months. Abundance and biomass were positively correlated with water temperature but negatively correlated with nutrient concentrations and turbidity. Additionally, Podon spp. abundance was negatively correlated with anthropogenic chemicals (i.e., polycyclic aromatic hydrocarbons). We employed generalized additive models to quantify the relative contribution of temperature, salinity, turbidity, chlorophyll a concentration and pollutant levels to the dynamics of the studied taxa. Turbidity and chlorophyll a concentrations were revealed to be the predictor with the highest importance in all models predicting the abundances/body size of the selected species. Anthropogenic chemicals were not informative in explaining branchiopod abundance or body size. The findings of this study establish a baseline for future studies, which is essential for our understanding of the zooplankton dynamics in the North Sea, particularly in the context of climate change and changing water quality.

Ocean acidification alters microeukaryotic and bacterial food web interactions in a eutrophic subtropical mesocosm

Ocean acidification (OA) is known to influence biological and ecological processes, mainly focusing on its impacts on single species, but little has been documented on how OA may alter plankton community interactions. Here, we conducted a mesocosm experiment with ambient (∼410 ppmv) and high (1000 ppmv) CO2 concentrations in a subtropical eutrophic region of the East China Sea and examined the community dynamics of microeukaryotes, bacterioplankton and microeukaryote-attached bacteria in the enclosed coastal seawater. The OA treatment with elevated CO2 affected taxa as the phytoplankton bloom stages progressed, with a 72.89% decrease in relative abundance of the protist Cercozoa on day 10 and a 322% increase in relative abundance of Stramenopile dominated by diatoms, accompanied by a 29.54% decrease in relative abundance of attached Alphaproteobacteria on day 28. Our study revealed that protozoans with different prey preferences had differing sensitivity to high CO2, and attached bacteria were more significantly affected by high CO2 compared to bacterioplankton. Our findings indicate that high CO2 changed the co-occurrence network complexity and stability of microeukaryotes more than those of bacteria. Furthermore, high CO2 was found to alter the proportions of potential interactions between phytoplankton and their predators, as well as microeukaryotes and their attached bacteria in the networks. The changes in the relative abundances and interactions of microeukaryotes between their predators in response to high CO2 revealed in our study suggest that high CO2 may have profound impacts on marine food webs.

Projected impacts of global warming scenarios on marine ecosystems: Insights from the CMIP6 model

Rising oceanic temperatures and increased heat content have triggered a decline in marine biodiversity and the degradation of ecosystem services. This study employs the Coupled Model Intercomparison Project Phase 6 (CMIP6) to analyze variables within the Nutrient-Phytoplankton-Zooplankton-Detritus (NPZD) framework. Focusing on two contrasting Shared Socioeconomic Pathways (SSPs) - SSP1-2.6 (low-warming scenario) and SSP5-8.5 (high-warming scenario) - we assess future impacts of climate-related factors on marine ecosystems across major oceanic regions. Under the high-warming SSP5-8.5 scenario, global ocean temperature rise, coupled with declining surface pH levels, nitrate concentrations, and plankton biomass/productivity, is evident. Regional reductions in plankton biomass/productivity, especially pronounced at higher latitudes, are observed in both SSP scenarios. Nutrient cycling emerges as a pivotal factor influencing plankton communities, particularly ammonium regulation in the Southern Ocean. This research emphasizes the urgent need to curb greenhouse gas emissions to mitigate global warmings profound effects on marine ecosystems.

Microzooplankton and phytoplankton of Ross Sea polynya areas and potential linkage among functional traits

The Ross Sea is characterized by a series of subsystems with different characteristics making it an extremely productive area. To understand whether species composition and functional traits of the plankton community can be used as biological tracers, we have analyzed the composition of phytoplankton and microzooplankton, and their potential relationships, in two different polynyas of the Ross Sea during the austral summer 2017. Sampling activities were carried out near Terra Nova Bay, between Cape Washington and the northern shore of the Drygalski Ice Tongue, and in the South-Central Ross Sea. We investigated the phytoplankton and microzooplankton structure using the phytoplankton body size classes and the tintinnids lorica oral diameter as functional traits, speculating on the relationship between the two plankton communities and their use as biological indicators in a changing Southern Ocean. Our data showed significant differences in terms of plankton composition and related functional traits between the two areas, suggesting the existence of distinct ecological dynamics despite the similar total carbon content. In Terra Nova Bay, heterotrophic dinoflagellates were the most abundant microzooplankton, in association with a large phytoplankton biomass mainly represented by diatoms and nano- and micro-phytoplankton. Tintinnids with large lorica oral diameters were abundant in Central Ross Sea, where phytoplankton was dominated by Phaeocystis antarctica and by the micro size class. Among microzooplankton, Protoperidinium defectum, P. applanatum and P. incertum were the most abundant dinoflagellates species, while Codonellopsis gaussi, C. gaussi forma cylindroconica, Laackmanniella prolongata and Cymatocylis drygalskii were the most abundant tintinnids. The phytoplankton was dominated by diatoms Pseudo-nitzschia subcurvata, Fragilariopsis cylindrus, F. curta and by the haptophyte P. antarctica. Our data indicate that beyond physical and chemical features defining distinct sectors of the Ross Sea, both species composition and functional traits of phytoplankton and microzooplankton represent a valid monitoring tool, especially with the ongoing global warming and its effects on Antarctic food webs.

Remote 3D Imaging and Classification of Pelagic Microorganisms with A Short‐Range Multispectral Confocal LiDAR

AbstractPlankton is essential to maintain healthy aquatic ecosystems since it influences the biological carbon pump globally. However, climate change‐induced alterations to oceanic properties threaten planktonic communities. It is therefore crucial to monitor their abundance to assess the health status of marine ecosystems. In situ optical tools unlock high‐resolution measurements of sub‐millimeter specimens, but state‐of‐the‐art underwater imaging techniques are limited to fixed and small close‐range volumes, requiring the instruments to be vertically dived. Here, a novel scanning multispectral confocal light detection and ranging (LiDAR) system for short‐range volumetric sensing in aquatic media is introduced. The system expands the inelastic confocal principle to multiple wavelength channels, allowing the acquisition of 4D point clouds combining near‐diffraction limited morphological and spectroscopic data that is used to train artificial intelligence (AI) models. Volumetric mapping and classification of microplastics is demonstrated to sort them by color and size. Furthermore, in vivo autofluorescence is resolved from a community of free‐swimming zooplankton and microalgae, and accurate spectral identification of different genera is accomplished. The deployment of this photonic platform alongside AI models overcomes the complex and subjective task of manual plankton identification and enables non‐intrusive sensing from fixed vantage points, thus constituting a unique tool for underwater environmental monitoring.

Diversity and distribution of small-sized planktonic ciliate communities in the East China Sea

Ciliates are an important ecological component in the microbial food web, but few studies have been conducted on the spatial distribution of small-sized planktonic ciliate communities in the East China Sea (ECS). Investigating ciliate communities using conventional morphological approaches is particularly difficult for the small, fragile, and naked species. Therefore, we applied DNA metabarcoding analysis to explore the spatial pattern of small-sized planktonic ciliate community structure within the surface, deep chlorophyll maximum (DCM), and bottom layers. Results showed the cosmopolitan species, Leegaardiella sp., was dominant and widespread in the ECS. The relative abundance of the mixotrophic family Tontonnidae decreased in the deeper layer. We characterized water masses of the ECS using environmental variables. In nano-sized ciliate communities, non-metric multidimensional scaling (NMDS) plots revealed a correlation with temperature, salinity, density, and depth. The circulation patterns were similar to cluster analysis results, suggesting that hydrographic conditions shaped small-sized ciliate community composition.

Glimpsing the 2020 spring bloom in the Strait of Georgia (Canada) with autonomous ferry-based sensors

Spatiotemporal observations are data rich and offer insights into links between ecological patterns and underlying processes. We present fine-scale autonomous observations from repeated ferry transects in the Strait of Georgia (British Columbia, Canada) during the 2020 spring bloom period using a FerryBox system (temperature, salinity, chlorophyll a fluorescence) and a digital inline holographic microscope. Despite instrument cleaning interruptions related to COVID-19 restrictions, 3 periods from late winter (February) to springtime (March and April) contained 14 days of high-quality holograms (>70000) capturing >10500 identifiable micro- to mesoplankton using automatic object detection. The ferry set-up provided automatic data storage through Ocean Networks Canada, which also automatized data flagging and guaranteed remote access. The highest-quality holograms repeatedly covered the central and eastern Strait and showed aspects of bloom succession. Fast-growing diatoms (Skeletonema sp.) emerged first, followed by a diverse assemblage including Chaetoceros spp., Ditylum spp., and Eucampia spp., and by April, larger centric cells prevailed. The combined approach captured local suppression of chlorophyll a fluorescence and diatom concentrations in Fraser River plume waters during the freshet, suggesting fine-scale spatial patterns in seasonal planktonic community composition. This work is among the first of its kind to autonomously generate in situ imaging and physicochemical data with spatiotemporal resolution.

Seasonality regulates the distinct assembly patterns of microeukaryotic plankton communities in the Three Gorges Reservoir, China.

The hydrographic and environmental factors along the Three Gorges Reservoir (TGR) have been significantly altered since the Three Gorges Dam (TGD) began working in 2006. Here, we collected 54 water samples, and then measured the environmental factors, followed by sequencing of the 18S rRNA gene and subsequent analysis of community assembly mechanisms. The findings indicated that the majority of environmental variables (such as AN, TP, Chl-a, CODMn, and Cu) exhibited both temporal and spatial variations due to the influences of the TGD. The distribution of different environmental factors and microeukaryotic plankton communities is influenced by the changing seasons. The community structure in TGR showed variations across three seasons, possibly due to variations in their environmental preferences, inherent dissimilarities, and seasonal succession. Furthermore, different communities exhibited a comparable distance-decay trend, suggesting that distinct taxa are likely to exhibit a similar spatial distribution. In addition, the community formation in TGR was influenced by both deterministic and stochastic factors, with the balance between them being mainly controlled by the season. Specifically, deterministic processes could explain 33.9-51.1% of community variations, while stochastic processes could contribute 23.5-32.2%. The findings of this research demonstrated that the varying ecological processes' significance relied on environmental gradients, geographical scale, and ecological conditions. This could offer a fresh outlook on comprehending the composition, assembly mechanisms, and distribution patterns of microeukaryotic plankton in reservoir ecosystems.

Hydrodynamic and biochemical impacts on the development of hypoxia in the Louisiana–Texas shelf – Part 1: roles of nutrient limitation and plankton community

Abstract. A three-dimensional coupled hydrodynamic–biogeochemical model with multiple nutrient and plankton functional groups was developed and adapted to the Gulf of Mexico to investigate the role of nutrients and the complexity of plankton community in dissolved oxygen (DO) dynamics. A 15-year hindcast was achieved covering the period of 2006–2020. Extensive model validation against in situ data demonstrates that the model was capable of reproducing vertical distributions of DO and spatial distributions of bottom DO concentration, as well as their interannual variations. The study demonstrates that bottom DO dynamics and hypoxia evolution are significantly influenced by both physical processes and local biochemistry, with sedimentary oxygen consumption and vertical diffusion identified as key contributors. Summer hydrodynamics play a critical role in nutrient distribution and limitation: a notable expansion of Si limitation was simulated when coastal currents shifted eastward or northward. This effect, especially pronounced on the western part of the Louisiana–Texas shelf, underscores the importance of nutrient limitation in shaping DO dynamics. The model identifies a bi-peak primary production pattern in spring and early summer, aligned with satellite chlorophyll a variations, attributed to the complexity of the plankton community and interactions among different plankton groups. Our findings emphasize the necessity of integrating sophisticated plankton community dynamics into biogeochemical models to understand primary production variability and its impact on bottom hypoxia.

Comparative metagenomic analysis of microbial community compositions and functions in cage aquaculture and its nearby non-aquaculture environments.

In the context of burgeoning global aquaculture, its environmental repercussions, particularly in marine ecosystems, have gained significant attentions. Cage aquaculture, a prominent method, has been observed to significantly influence marine environments by discharging substantial amounts of organic materials and pollutants. It is also one of the important reasons for water eutrophication. This study investigated the impacts of cage aquaculture on microbial diversity and functional potential using metagenomics. Specifically, a comparison was made of the physicochemical indicators and microbial diversity between three grouper aquaculture cage nets in Lingshui Xincun Port and three nearby non-aquaculture area surface waters. We found that compared to non-aquaculture areas, the eutrophication indicators in aquaculture environments significantly increased, and the abundances of Vibrio and Pseudoalteromonas in aquaculture environments significantly rose. Additionally, microbial functional genes related to carbon, nitrogen, and sulfur metabolisms were also found to be significantly affected by aquaculture activities. The correlation analysis between microbial populations and environmental factors revealed that the abundances of most microbial taxa showed positive correlations with dissolved inorganic nitrogen, soluble reactive phosphorus, NH4+, and negative correlations with dissolved oxygen. Overall, this study elucidated the significant impacts of aquaculture-induced eutrophication on the diversity and functions of planktonic bacterial communities.

Distinct structure, assembly, and gene expression of microplankton in two Arctic estuaries with varied terrestrial inputs

The Laptev Sea is a major Marginal Sea in the Western Arctic Ocean. The Arctic amplification brought by global warming influences the hydrological properties of rivers passing through the permafrost zone, which would alter the biological community structure at continental margin. In this study, the structure, assembly, and gene expression of planktonic microbial communities in two estuaries (Protoka Ularovskaya River Estuary, PURE; Lena River Estuary, LRE) of Laptev Sea were examined to investigate the environmental effects of polar rivers. PURE and LRE exhibited distinct environmental characteristics: low temperature and high salinity for PURE, and high temperature and low salinity for LRE, influenced by runoff size. Salinity more closely influenced microbial communities in LRE, with freshwater species playing a significant role in community composition. The findings revealed differences between two estuaries in community composition and diversity. Prokaryotes and microeukaryotes had shown different assembly patterns in response to habitat changes caused by terrestrial freshwater input. Furthermore, compared with the PURE, the co-occurrence and inter-domain network of the LRE, which was more affected by terrestrial input, was more complex and stable. Functional gene prediction revealed a higher gene expression of methane metabolism in LRE than in PURE, particularly those related to methane oxidation, and this conclusion could help better explore the impact of global warming on the methane cycle in the Arctic Marginal Seas. This study explored the increased freshwater runoffs under the background of global warming dramatically affect Arctic microplankton communities from community structure, assembly and gene expression aspects.

Spatial distribution and assembly processes of bacterial communities in riverine and coastal ecosystems of a rapidly urbanizing megacity in China

Rapid urbanization has precipitated significant anthropogenic pollution (nutrients and pathogens) in urban rivers and their receiving systems, which consequentially disrupted the compositions and assembly of bacterial community within these ecosystems. However, there remains scarce information regarding the composition and assembly of both planktonic and benthic bacterial communities as well as pathogen distribution in such environments. In this study, full-length 16S rRNA gene sequencing was conducted to investigate the bacterial community composition, interactions, and assembly processes as well as the distribution of potential pathogens along a riverine-coastal continuum in Shenzhen megacity, China. The results indicated that both riverine and coastal bacterial communities were predominantly composed of Gammaproteobacteria (24.8 ± 12.6 %), Alphaproteobacteria (16.1 ± 9.8 %), and Bacteroidota (14.3 ± 8.6 %), while sedimentary bacterial communities exhibited significantly higher diversity compared to their planktonic counterparts. Bacterial community patterns exhibited significant divergences across different habitats, and a significant distance-decay relationship of bacterial community similarity was particularly observed within the urban river ecosystem. Moreover, the urban river ecosystem displayed a more complex bacterial co-occurrence network than the coastal ecosystem, and a low ratio of negative:positive cohesion suggested the inherent instability of these networks. Homogeneous selection and dispersal limitation emerged as the predominant influences on planktonic and sedimentary bacterial communities, respectively. Pathogenic genera such as Vibrio, Bacteroides, and Acinetobacter, known for their roles in foodborne diseases or wound infection, were also identified. Collectively, these findings provided critical insights into bacterial community dynamics and their implications for ecosystem management and pathogen risk control in riverine and coastal environments impacted by rapid urbanization.

Temporal and spatial variability in metabolism of the Antarctic pelagic tunicate Salpa thompsoni Foxton, 1961

ABSTRACT The mass-specific metabolic rates of the Antarctic pelagic tunicate Salpa thompsoni Foxton, 1961 were studied during March-April of 1998 and March 2002. The study revealed a large variation in metabolic rates and assessed sources of this variability. The main factors driving variability included density of tunicates in incubation containers (incubation density, e.g. the salp mass per unit volume of the respirometer), diel/circadian rhythms in salps, and spatial variability of their metabolic performance related to the feeding conditions. The mass specific respiration rates of both salp life forms (oozooids and blastozooids) appeared to be independent of their body mass. The salp-specific respiration rates at 3°C were strongly negatively influenced by their incubation density ranging between 2.0 and 90.4 gWW.l−1. Salp respiration rates adjusted to an incubation density of 3 gWW.l−1 in both oozooids and blastozooids followed similar circadian rhythms with the mean respiration rates of 79.5 and 41.5 μg O2 gWW−1 h−1, respectively. Deviation of these rates from actual field-measured respiration rates corrected for the salp density and diel variability during 1998 and 2002 identified effects of food concentrations, i.e. proxy of the plankton community development and composition, on the salp population performance.

Influence of ocean alkalinity enhancement with olivine or steel slag on a coastal plankton community in Tasmania

Abstract. Ocean alkalinity enhancement (OAE) aims to increase atmospheric CO2 sequestration in the oceans through the acceleration of chemical rock weathering. This could be achieved by grinding rocks containing alkaline minerals and adding the rock powder to the surface ocean where it dissolves and chemically locks CO2 in seawater as bicarbonate. However, CO2 sequestration during dissolution coincides with the release of potentially bioactive chemicals and may induce side effects. Here, we used 53 L microcosms to test how coastal plankton communities from Tasmania respond to OAE with olivine (mainly Mg2SiO4) or steel slag (mainly CaO and Ca(OH)2) as alkalinity sources. Three microcosms were left unperturbed and served as a control, three were enriched with olivine powder (1.9 g L−1), and three were enriched with steel slag powder (0.038 g L−1). Olivine and steel slag powders were of similar grain size. Olivine was added in a higher amount than the steel slag with the aim of compensating for the lower efficiency of olivine to deliver alkalinity over the 3-week experiment. Phytoplankton and zooplankton community responses as well as some biogeochemical parameters were monitored. Olivine and steel slag additions increased total alkalinity by 29 and 361 µmol kg−1, respectively, corresponding to a respective theoretical increase of 0.9 % and 14.8 % of the seawater storage capacity for atmospheric CO2. Olivine and steel slag released silicate nutrients into the seawater, but steel slag released considerably more and also significant amounts of phosphate. After 21 d, no significant difference was found in dissolved iron concentrations (>100 nmol L−1) in the treatments and the control. The slag addition increased dissolved manganese concentrations (771 nmol L−1), while olivine increased dissolved nickel concentrations (37 nmol L−1). There was no significant difference in total chlorophyll-a concentrations between the treatments and the control, likely due to nitrogen limitation of the phytoplankton community. However, flow cytometry results indicated an increase in the cellular abundance of several smaller (∼<20 µm) phytoplankton groups in the olivine treatment. The abundance of larger phytoplankton (∼>20 µm) decreased much more in the control than in the treatments after day 10. Furthermore, the maximum quantum yields of photosystem II (Fv/Fm) were higher in slag and olivine treatments, suggesting that mineral additions increased photosynthetic performance. The zooplankton community composition was also affected, with the most notable changes being observed in the dinoflagellate Noctiluca scintillans and the appendicularian Oikopleura sp. in the olivine treatment. Overall, the steel slag used here was more efficient for CO2 removal with OAE than the olivine over the 3-week timescale of the experiment. Furthermore, the steel slag appeared to induce less change in the plankton community than the olivine when comparing the CO2 removal potential of both minerals with the level of environmental impact that they caused.

Structure of plankton and waterbird communities under water level fluctuations: two case studies in shallow lakes of the Patagonian steppe

Structure of plankton and waterbird communities under water level fluctuations: two case studies in shallow lakes of the Patagonian steppe

Anthropogenic Eutrophication Drives Major Food Web Changes in Mwanza Gulf, Lake Victoria

Discerning ecosystem change and food web dynamics underlying anthropogenic eutrophication and the introduction of non-native species is necessary for ensuring the long-term sustainability of fisheries and lake biodiversity. Previous studies of eutrophication in Lake Victoria, eastern Africa, have focused on the loss of endemic fish biodiversity over the past several decades, but changes in the plankton communities over this same time remain unclear. To fill this gap, we examined sediment cores from a eutrophic embayment, Mwanza Gulf, to determine the timing and magnitude of changes in the phytoplankton and zooplankton assemblages over the past century. Biogeochemical proxies indicate nutrient enrichment began around ~ 1920 CE and led to rapid increases in primary production, and our analysis of photosynthetic pigments revealed three zones: pre-eutrophication (prior to 1920 CE), onset of eutrophication with increases in all pigments (1920–1990 CE), and sustained eutrophication with cyanobacterial dominance (1990 CE–present). Cladoceran remains indicate an abrupt decline in biomass in ~ 1960 CE, in response to the cumulative effects of eutrophication and lake-level rise, preceding the collapse of haplochromine cichlids in the 1980s. Alona and Chydorus, typically benthic littoral taxa, have remained at relatively low abundances since the 1960s, whereas the abundance of Bosmina, typically a planktonic taxon, increased in the 1990s concurrently with the biomass recovery of haplochromine cichlid fishes. Overall, our results demonstrate substantial changes over the past century in the biomass structure and taxonomic composition of Mwanza Gulf phytoplankton and zooplankton communities, providing a historical food web perspective that can help understand the recent changes and inform future resource management decisions in the Lake Victoria ecosystem.

Coastal Eukaryotic Plankton Diversity of the Southern Adriatic as Revealed by Metabarcoding

Plankton studies serve as a basis for marine ecosystem research, but knowledge of marine plankton is still incomplete due to its extreme taxonomic and functional complexity. The application of metabarcoding is very valuable for the characterisation of the plankton community. The plankton community of the Southern Adriatic is subject to strong environmental fluctuations and changes, which underlines the need for frequent, reliable and comprehensive characterisation of the plankton. The aim of this study was to determine the taxonomic composition and seasonal distribution of eukaryotic plankton in the Southern Adriatic. Plankton samples were collected monthly for one year at the coastal station of the Southern Adriatic and metabarcoding was used for taxonomic identification. The results showed a high taxonomic diversity and dynamic seasonal distribution patterns for both the protist and metazoan plankton communities. Metabarcoding revealed both the core, year-round plankton community and previously unrecorded plankton organisms in the Southern Adriatic. The results provide for the first time a comprehensive overview of the plankton community in this area by metabarcoding. The identified seasonal patterns of plankton genera and species in the Southern Adriatic will contribute to the understanding of plankton interactions and future changes in community diversity characterisation.

Assemblages of planktonic cnidarians in winter and their relationship to environmental conditions in the NW Mediterranean Sea

In the present study, we addressed the spatial characterization and species assemblages of the planktonic cnidarian community (Siphonophorae, Hydromedusae, and Scyphomedusae) in winter, a period that has been the subject of few studies in the NW Mediterranean. Data were obtained on two oceanographic cruises, in February 2017 and 2018. In 2017, the early onset of spring conditions and the subsequent phytoplankton bloom favored a mixture of winter and spring species, resulting in a higher species richness but a lower abundance of cnidarians. However, the typical winter oceanographic conditions in 2018 allowed winter species populations to develop, leading to a higher abundance of cnidarians that year. The most abundant species in both winters were Lensia subtilis, Muggiaea kochii, Chelophyes appendiculata, Abylopsis tetragona (eudoxid), Aglaura hemistoma, and Velella velella rataria larvae, while Obelia spp. was particularly numerous in 2017. In both years, the cluster and redundancy analyses showed a coastal-offshore ordination in species assemblages resulting from the effect of environmental variables (particularly bathymetry) and oceanographic structures (water masses and the shelf-slope density front). The presence of submarine canyons, in which great depths are reached close to the coast, modified the circulation patterns, resulting in a mixture of coastal and offshore species in these areas. In the current scenario of global warming, our results will help to provide a baseline for identifying future changes in the structure of the planktonic cnidarian community.

Testing 16S Primers for Proper Identification of Cyanobacterial Communities in Small Water Bodies

The majority of investigations on microbial communities from various environments are presently built on culture-independent methods. Many studies point to the pivotal, selective role of primers targeting hypervariable regions of 16S rRNA in the metabarcoding of bacteria, including cyanobacterial communities. The selectivity of primers designed to amplify targeted regions of the 16S rRNA gene, which has been highlighted by many authors, limited effective amplification. Moreover, the type and specificity of the studied material can also negatively influence the results of 16S metabarcoding. Most of the studies of cyanobacterial communities have been performed for planktonic microbial communities that are often represented by common, well-studied species. In this study, we present the results of 16S metabarcoding analysis using three primer pairs—two already well-known and a third designed in this study—that amplify divergent regions of the 16S rRNA gene (V3–V4, V4–V6, V6) for benthic, microbial mat-forming cyanobacteria communities. Such communities can be a source of toxigenic cyanobacterial taxa and should be monitored with adequate primers. The comparison of three primer pairs suggested that those designed within the present study describe the structure and composition of highly heterogeneous cyanobacterial mats’ communities better than the others.