Dark enclaves in the late Paleocene granitoids of Doumer Island, northern Antarctic Peninsula, were examined by field investigations, zircon U–Pb geochronology, mineral chemistry, whole-rock major- and trace-elements, and Sr-Nd-Li isotopes to elucidate their origins and genetic relationships with host granitoids. The enclaves and host granitoids have similar zircon U–Pb ages of 54.6–55.7 Ma and indistinguishable Nd–Sr isotopes of εNd(t) = 4.7–6.1, ISr = 0.7036–0.7039, indicating a cogenetic relationship. A pyroxene-dioritic enclave (WA16–06-3) is a cognate restite with peritectic phases that resulted from amphibole-dehydration melting at temperatures above 800 °C and at low-P (7–10 kbar). Two other enclaves (WA16–07-2 and WA15–27-3) are fragments of the chilled margins of the conduits entrained in the later insurgent felsic magma. The flat, right-leaning REE patterns are accompanied by positive Eu anomalies (Eu/Eu* = 1.07–1.16) in the dark enclaves and negative Eu anomalies (Eu/Eu* = 0.72–0.88) in the host intrusions. The accumulation of restitic plagioclase and peritectic pyroxene could have induced the positive Eu anomalies in the dark enclaves. The P–T conditions estimated from cummingtonite rims on pyroxene in the pyroxene-dioritic enclave suggest near-isothermal decompression in an environment of fast exhumation. Enclave WA16–07-2 is part of an intense swarm of enclaves near the pluton margin, and crystallized from a less evolved melt that was mechanically eroded by the host magma, indicating a transient state of magma flow. The dioritic enclaves were transported in the form of ductile crystal–melt mushes that were rotated in the insurgent viscous granitoid magma. The enclaves become rounder and sparser towards the interior of the host pluton. Dehydration melting of metabasalt could have produced these melts that are rich in δ7Li while leaving a lighter δ7Li pyroxene-rich residue at the source. The underlying cause of these events was the retreat of the subducting proto-Pacific (Phoenix) oceanic slab beneath the western Antarctic Peninsula that triggered melting of asthenospheric mantle, with basaltic magma underplating and melting a juvenile metabasaltic lower crust.