Species of the genus Piper are important medicinal plants of high commercial and economic importance have been used extensively as an individual plant part in various systems of medicine. To provide chemical information for differential use, quantitative determination and comparative analysis were carried out in different plant parts (fruits & leaves) of ten Piper species. To determine the contents and distribution of thirteen compounds a new method has been established using ultra performance liquid chromatography coupled with triple quadrupole electrospray tandem mass spectrometry in multiple reaction monitoring (MRM) mode with continuous polarity switching. A good linear regression relationship for each analyte was obtained (r, 0.9986–0.9999), intraday precision (%RSD, 0.63–3.37), interday precision (%RSD, 0.91–4.09), stability (RSD, 1.59–3.14) and recovery (%RSD, 0.78–2.78). The method sensitivity expressed in terms of limit of detection (LOD), which is ≤1.34ng/mL for all analytes. The analysis results showed that piperamides are the signature class of compounds, which were found highest in fruits of Piper longum (21,500μg/g), while phenolics were in close proportion and highest in fruits of Piper mullesa (1129μg/g) and leaves of P. longum (1094μg/g). Similarly, terpenoid content was detected highest in fruits of Piper umbellatum (8600μg/g). Principal component analysis was carried out to compare and evaluate the quality of ten Piper species based on the contents of the thirteen investigated compounds. The present comparative study is of great importance for the rational application and quality control of different Piper species.