Pinot Noir Research Articles

Assessment of Symptoms of Grapevine Leafroll Disease and Relationship with Yield and Quality of Pinot Noir Grape Must in a 10-Year Study Period.

Grapevine leafroll disease (GLD) is caused by one or more of the Grapevine leafroll-associated viruses (GLRaVs). GLD's symptoms are expected to be evident in indicator cultivars, regardless of the GLRaV(s) involved. In the present study, disease incidence (I) and severity (S), symptoms before veraison (Sy < V), a disease severity index (DSI) and an earliness index (EI) (2013-2022) were recorded in order to examine the factors affecting the evolution of GLD in Pinot noir graft inoculated with scions infected with GLRaV-3 that, in origin, showed a diversity of GLD symptoms. Strong correlations between I and S (r = 0.94) and between Sy < V and EI (r = 0.94) were observed; early symptoms proved good predictors of incidence and severity after veraison and of yield and sugar content of the must. The environmental conditions and time after infection did not modify the wide range of symptoms (I: 0-81.5%; S: 0.1-4) that corresponded with the variation in losses (<0-88% for yield and <0-24% for sugar content). With all other factors being constant, the significant differences between plants were mainly due to the GLRaVs present. Plants infected with some GLRaV-3 isolates always had mild symptoms or remained asymptomatic 10 years after grafting but remained a source of infection for GLRaV vectors.

Jasmonic acid and salicylic acid induced defensive response in wine grapes against Drosophila suzukii (Diptera: Drosophilidae)

To better understand the elicitor induced defense in wine grapes against Drosophila suzukii (Matsumura), two varieties, Pinot Noir and Chardonnay, were sprayed with jasmonic acid (JA) and salicylic acid (SA). Total phenols, total flavonoids, total tannins and total soluble sugars were quantified. Oviposition preference by D. suzukii in response to JA and SA applications were also studied. Behavioral response of D. suzukii to various sugars was recorded. The effect of flavonoids (gallic acid, catechin, quercetin at 100 and 500 ppm) on mortality of D. suzukii was also studied in CAFE assay. Our results showed that JA and SA application significantly affected phenol, flavonoid and tannin contents of grapes. Reduced injury was observed in treated plants; this reduction was more pronounced in Chardonnay than Pinot Noir. The number of eggs laid by D. suzukii females was lower in JA and SA-treated plants; this reduction was more pronounced under no-choice conditions than under choice conditions. In prandial behavior, sucrose solution (5%), glucose solution (5%), fructose solution (5%), sucrose (5%) + yeast (5%) solutions and yeast solutions (5%) showed higher attraction of D. suzukii females compared to control treatments. Among flavonoids, catechin (100 ppm) showed higher mortality of D. suzukii than rest of the treatments. The results of this study can be used for developing management strategies of D. suzukii in wine grapes and related crops.

Malolactic fermentation of lactic acid bacteria isolated from southern Brazilian red wine.

The objective was to isolate lactic acid bacteria (LAB) from southern Brazil's wines and investigate their potential as starter cultures for malolactic fermentation (MLF) in Merlot (ME) and Cabernet Sauvignon (CS) wines through the fermentative capacity. The LAB were isolated from CS, ME, and Pinot Noir (PN) wines in the 2016 and 2017 harvests and evaluated for morphological (color and shape of the colonies), genetic, fermentative (increase in pH, acidity reduction, preservation of anthocyanins, decarboxylation of L-malic acid, yield of L-lactic acid, and content of reduced sugars), and sensory characteristics. Four strains were identified as Oenococcus oeni [CS(16)3B1, ME(16)1A1, ME(17)26, and PN(17)65], one as Lactiplantibacillus plantarum [PN(17)75], and one as Paucilactobacillus suebicus [CS(17)5]. Isolates were evaluated in the MLF and compared to a commercial strain (O. oeni), as well as a control (without inoculation and spontaneous MLF), and standard (without MLF). CS(16)3B1 and ME(17)26 isolates finished the MLF for CS and ME wines, respectively, after 35 days, similar to the commercial strain, and CS(17)5 and ME(16)1A1 isolates ended the MLF in 45 days. In the sensory analysis, ME wines with isolated strains received better scores for flavor and overall quality than the control. Compared to the commercial strain, CS(16)3B1 isolate obtained the highest scores for buttery flavor and taste persistence. CS(17)5 isolate received the higher scores for a fruity flavor and overall quality and the lowest for a buttery flavor. The native LAB displayed MLF potential, regardless of the year and grape species from which they were isolated.

Impact of meteorological conditions, canopy shading and leaf removal on yield, must quality, and norisoprenoid compounds content in Franciacorta sparkling wine.

Climate change is a major concern in agriculture; in grapevine production, climate change can affect yield and wine quality as they depend on the complex interactions between weather, plant material, and viticultural techniques. Wine characteristics are strongly influenced by microclimate of the canopy affecting primary and secondary metabolites of the grapevine. Air temperature and water availability can influence sugar and acid concentration in grapes and relative wines, and their content of volatile compounds such as norisoprenoids. This becomes relevant in sparkling wine production where grapes are generally harvested at a relatively low pH, high acidity, and low sugar content and where the norisoprenoids significantly contributes to the final aroma of the wine. The effect of climate change on grapevine and wine, therefore, calls for the implementation of on-field adaptation strategies. Among them canopy management through leaf removal and shading have been largely investigated in the wine growing sector. The present study, conducted over 4 years (2010-2013) aims at investigating how leaf removal and artificial shading strategies affect grape maturation, must quality and the production of norisoprenoids, analyzed using an untargeted approach, in sparkling wine. Specifically, this paper investigates the effect of meteorological conditions (i.e., water availability and temperatures) and the effect of leaf removal and shading on Vitis vinifera L. cv. Chardonnay and Pinot noir, which are suitable to produce sparkling wine in the DOCG Franciacorta wine growing area (Lombardy, Italy). The effect of leaf removal and shading practices on norisoprenoids has been the focus of the study. No defoliation and artificial shading treatments play an important role in the preservation of the acidity in warm seasons and this suggests calibrating defoliation activities in relation to the meteorological trend without standardized procedures. This is particularly relevant in the case of sparkling wine, where the acidity is essential to determine wine quality. The enhanced norisoprenoid aromas obtained with a total defoliation represent a further element to direct defoliation and shading strategies. The obtained results increase knowledge about the effect of different defoliation and artificial shading applications in relation to meteorological condition supporting the management decision-making in the Franciacorta wine growing area.

Effect of Grape Pomace Varieties and Soil Characteristics on the Leaching Potential of Total Carbon, Nitrogen and Polyphenols

Grape pomace (GP) has an added value because of its contribution to carbon (C) and nitrogen (N) in soils when applied as an organic fertilizer. Macronutrients from GP are translocated into the soil after amendment, but little is known about the factors that may influence the mobility of C, N and bioactive molecules, i.e., polyphenols, in the soil column. We investigated the mobility of the macronutrient content of GP, derived from two red (Dornfelder and Pinot noir) and two white grape varieties (Riesling and Pinot blanc). For that, three different soils (loamy sand RefeSol01A, silt loam RefeSol02A and a vineyard soil) were evaluated in a column model using a GP application rate of 30 t ha−1. The three-step lab-scale approach included the analysis of total C, N and polyphenols expressed as total polyphenolic content (TPC) in: (a) the fresh GP, representing the total amount of C, N and TPC; (b) the mobility with rainwater, representing the aqueous extractable fraction and (c) the mobility in the soil column and leaching potential. Our results showed that total C/N ratios were wider in the white GP varieties compared with the red ones. Higher TPC values were measured in Dornfelder and Pinot noir compared with white varieties. Analysis of the water-extractable fraction showed that the C recovery may reach up to 48% in Pinot blanc, which also corresponds to the highest N contribution. Extractable polyphenols were higher in the red compared with the white varieties by a factor of 2.4. C and N were mobilized with rainwater from the GP through the soil column. However, the application rate used in the experiment was not indicative of an accumulation in the soil. Compared with the control (no GP application), C values were significantly higher in the leachates from GP-treated soils, in contrast to N values. Up to 10% of the TPC of the pomace was leached into the soil. The TPC recovery in the soils strongly depended on the combination of soil type and GP variety. Generally, the sandy and more acidic soil showed an even distribution of phenolics with a high recovery rate (up to 92%) compared with more neutral and silty soil. Most of the polyphenol content could accumulate in the upper soil layer (0–10 cm). These results provide the first insights on the mobility of macronutrients in the soil using a column model and point out the need to relate those experiments to soil and GP properties in order to avoid the accumulation of nutrients in soil or mobility to adjacent ecosystems.

Comparison of Identification and Quantification of Polyphenolic Compounds in Skins and Seeds of Four Grape Varieties.

The aim of this study was to identify and quantify polyphenolic compounds in skin extracts from four Bulgarian grape varieties and compare them to those of seed extracts. The values of total phenolic contents, flavonoids, anthocyanins, procyanidins and an ascorbic acid in grape skin extracts were determined. The antioxidant capacities of skin extracts were evaluated using four different methods. The total phenolic content of skin extracts was 2-3 times lower than those of seed extracts. The significant difference between total parameter values of individual grape varieties were also found. According to the total phenolic content and antioxidant capacity of skin extracts, the different grape varieties were arranged in the following order: Marselan ≥ Pinot Noir ˃ Cabernet Sauvignon ˃ Tamyanka. The individual compounds in the grape skin extracts were determined using RP-HPLC and compared with those of the seed extracts. The determined composition of skin extracts was significantly different from the seed extracts' composition. Quantitative evaluation of the procyanidins and catechins in the skins was carried out. A correlation between phenolic contents, individual compounds and antioxidant capacity of different extracts was found. The studied grape extracts have a potential to be applied as natural antioxidants in the pharmaceutical and food industries.

Quantifying the grapevine xylem embolism resistance spectrum to identify varieties and regions at risk in a future dry climate

Maintaining wine production under global warming partly relies on optimizing the choice of plant material for a given viticultural region and developing drought-resistant cultivars. However, progress in these directions is hampered by the lack of understanding of differences in drought resistance among Vitis genotypes. We investigated patterns of xylem embolism vulnerability within and among 30 Vitis species and sub-species (varieties) from different locations and climates, and assessed the risk of drought vulnerability in 329 viticultural regions worldwide. Within a variety, vulnerability to embolism decreased during summer. Among varieties, we have found wide variations in drought resistance of the vascular system in grapevines. This is particularly the case within Vitis vinifera, with varieties distributed across four clusters of embolism vulnerability. Ugni blanc and Chardonnay featured among the most vulnerable, while Pinot noir, Merlot and Cabernet Sauvignon ranked among the most resistant. Regions possibly at greater risk of being vulnerable to drought, such as Poitou–Charentes, France and Marlborough, New Zealand, do not necessarily have arid climates, but rather bear a significant proportion of vulnerable varieties. We demonstrate that grapevine varieties may not respond equally to warmer and drier conditions, and highlight that hydraulic traits are key to improve viticulture suitability under climate change.

Future climatic conditions may threaten adaptation capacities for vineyards along Lake Neuchâtel, Switzerland

In Switzerland, as elsewhere in the world, climate change is challenging viticulture. Knowledge of the potential impacts is essential for preparing adaptation measures. Two aspects directly impacted by increasing temperatures are the choice of grapevine varieties and the location of vineyards. To help address these impacts, we analysed future trends in two bioclimatic indices, average growing season temperature (GST) and Huglin’s heliothermal index (HI), in the Swiss canton of Neuchâtel. We conducted our analysis based on regional climate change scenarios referring to the emission pathways RCP4.5 and RCP8.5. Under the assumption of RCP8.5, trends in GST and HI indicate that the climate in this region will become too hot for most grapevine varieties currently cultivated, especially Pinot noir. Moreover, adaptation problems under RCP8.5 are expected to originate from an increase in climate extremes in both temperature and precipitation. Results based on RCP4.5 indicate a broader scope for adaptation, as the climate will remain suitable for a larger number of grapevine varieties within the current altitudinal limits of the Neuchâtel vineyards. In theory, an altitudinal shift of Pinot noir would also be possible under this emission pathway. In practice, however, the possibility of establishing vineyards above 600 m would be limited by the presence of protected forests and rocky areas. Our results highlight that vineyards in this region will need important adaptation measures if anthropic greenhouse gas emissions do not decrease rapidly and considerably, limiting the global temperature increase to &lt; 1.5 °C.

Vine leaf decomposition: Feeding preferences and effects of physico-chemical traits of litter on life-history traits of the woodlice Armadillidium vulgare Latreille, 1804

Litter decomposition is a key ecosystem process which is dependent on the litter characteristics and diversity, the decomposer community and activity, and the environmental conditions. We assessed vine leaf decomposition by Armadillidium vulgare (Latreille, 1804), a terrestrial isopod widely distributed and naturally present in vineyards. We compared the decomposition of three grape varieties (Chardonnay, Pinot Noir and Sauvignon) with regular laboratory food (Tilia tomentosa (Moench, 1785)) for seven consecutive weeks. Seven traits were measured on the four litters tested in order to define their importance concerning (i) litter mass loss by the action of microorganisms and isopods (ii) the trophic traits (consumption and assimilation) and (iii) life-history traits (survival and growth) of A. vulgare. Thus, the chemical and physical traits (C/N ratio, tannin and fiber content, thickness) known to influence litter palatability and digestibility for decomposers were determined by standardized methods. In addition, the copper frequently used in viticulture as a fungicide which is potentially responsible for toxic effects on decomposers was measured by ICP-OES after litter mineralization in nitric acid. Our results showed a higher percentage of decomposability by microorganisms in litter with low cellulose content and C/N ratio. Higher isopod consumption and assimilation was found in the litters which is the poorest in tannin, lignin and copper contents. Variation of consumption according to litter was on average 1.5 to 2.7 lower for grape varieties compared to T. tomentosa litter. Assimilation was significantly lower with Pinot Noir than the other litters. To conclude, after seven weeks of experimentation, this study showed that if the growth and survival of woodlice were not affected by inter-varietal differences in vine leaf quality, their role in the decomposition process may be strongly modulated and reduced, especially after consumption of grape variety litters rich in copper, lignin and tannin.

Environmental influences on microbial community development during organic pinot noir wine production in outdoor and indoor fermentation conditions

The role of microbial diversity in influencing the organoleptic properties of wine and other fermented products is well est ablished, and understanding microbial dynamics within fermentation processes can be critical for quality assurance and product innovation. This is especially true for winemakers using spontaneous fermentation techniques, where environmental factors may play an important role in consistency of product. Here, we use a metabarcoding approach to investigate the influence of two environmental systems used by an organic winemaker to produce wines; vineyard (outdoors) and winery (indoors) to the bacterial and fungal communities throughout the duration of a spontaneous fermentation of the same batch of Pinot Noir grapes. Bacterial (RANOSIM = 0.5814, p = 0.0001) and fungal (RANOSIM = 0.603, p = 0.0001) diversity differed significantly across the fermentation stages in both systems. Members of the Hyphomicrobium genus were found in winemaking for the first time, as a bacterial genus that can survive alcoholic fermentation. Our results also indicate that Torulaspora delbrueckii and Fructobacillus species might be sensitive to environmental systems. These results clearly reflect the substantial influence that environmental conditions exert on microbial populations at every point in the process of transforming grape juice to wine via fermentation, and offer new insights into the challenges and opportunities for wine production in an ever-changing global climate.

Late Pruning and Forced Vine Regrowth in Chardonnay and Pinot Noir: Benefits and Drawbacks in the Trento DOC Basin (Italy)

Targeted pruning techniques may have the potential to shift phenological progression in grapevines. These approaches can be useful to escape late frost (after budburst) and to delay ripening, maintaining yield and berry quality under specific environmental scenarios and for targeted oenological aims. In this work we tested a series of pruning methods (late pruning and different forcing approaches to unlock the para-dormant buds) with the primary objective of delaying phenological onset while increasing must quality components in the Trento DOC basin (Italy) over three field seasons either in cv Chardonnay or cv Pinot noir. Delayed pruning shifted the onset of most of the phenological stages by 3 to 10 days with a general increase in must acidity at harvest over two seasons. Forcing techniques, and in particular forcing vine regrowth (i.e., removing primary productivity along with leaves and secondary shoots to force dormant bud growth), substantially reduced yield per vine (p &lt; 0.001) but significantly (p &lt; 0.001) enhanced total acidity and yeast available nitrogen when compared to winter pruning vines in both Chardonnay and Pinot noir. Different spring pruning for unlocking para-dormant buds aimed at double-cropping in 2022 did not yield a secondary harvest potentially due to lack of vigor in the vineyard (Pinot noir) and unfavorable environmental conditions that putatively anticipated bud pre-dormancy. However, reduced sugar levels in the primary productivity bunches of the treated vines were observed, suggesting that early source limitation (e.g., at fruit set) applied via reduced active photosynthetic leaf area may slow down technological ripening even if compensatory behaviors were observed in the treated plants through enhanced stomatal conductance. Our work provides evidence of the potential usefulness of different pruning approaches for manipulating phenological progression and berry ripening dynamics under climate change scenario in the Trento DOC area and suggests a lack of efficacy and specific drawbacks particularly in dry and hot years.

Yeast diversity during the spontaneous fermentation of wine with only the microbiota on grapes cultivated in Japan

Making wine via spontaneous fermentation without sulfur dioxide and commercial yeast (spontaneous winemaking) is increasing in recent year, but there is scant research regarding microbial communities present in Japan during spontaneous winemaking using culture-independent molecular methods. We analyzed fungal communities and populations during laboratory-scale spontaneous winemaking using sterilized labware to avoid winery-resident microbes. In the spontaneous fermentation of four grape varieties (Pinot Noir, Riesling, Koshu, and Koshusanjaku) grown in the same Japanese vineyard, our analysis of yeast and other fungal species by next-generation sequencing based on the ITS1 region demonstrated that Saccharomyces cerevisiae was eventually dominant in seven of 12 fermentation batches (three replications for each grape variety), whereas non-Saccharomyces species (e.g., Schizosaccharomyces japonicus, Lachancea dasiensis, and Hanseniaspora valbyensis) became dominant in four batches at the end of fermentation. In another batch, lactic acid bacteria (LAB) became dominant and the fermentation remained incomplete. Diverse microbes were involved in the spontaneous fermentation (particularly in Koshusanjaku), indicating that residual sugar remained and lactic and acetic acid largely increased. Compared to the control wine made with SO2 and commercial yeast, the concentration of lactic acid was 47-fold higher in the must dominated by L.dasiensis, and the concentrations of acetic acid and lactic acid were 10-fold and 20-fold higher in the must dominated by LAB, respectively. Even when indigenous S.cerevisiae became dominant, the finished wines obtained high sensory-analysis scores for complexity but low scores for varietal typicality, indicating the risk of fermentation with unselected wild yeast on the grapes grown in Japan.

Modelling Smoke Flavour in Wine from Chemical Composition of Smoke-Exposed Grapes and Wine

Wine grapes exposed to smoke and wine made from grapes exposed to smoke can robustly be identified through their elevated concentrations of volatile phenols and phenolic glycosides serving as smoke markers, compared to concentrations typically found in non-smoke-exposed samples. Smoke-affected wines with high concentrations of volatile phenols and glycosides can have smoky flavours, but the relationship between concentrations of specific smoke markers in grapes and the intensity of smoky sensory attributes in the resulting wine has not been established. This study sought to determine whether volatile phenols and glycoside concentration in grapes and wine are suited to predict smoke flavour, to identify the key drivers of smoke flavour in both matrices. The study aimed to determine what concentrations of volatiles and glycosides in grapes impart an unacceptable smoke flavour in the resulting wine, to provide a guide for producers assessing suitability of smoke-exposed grapes for wine production. During vintage 2020, a total of 65 grape samples were collected from vineyards exposed to bushfire smoke, as well as unaffected vineyards. Chardonnay, Pinot Noir, and Shiraz grapes were harvested from vineyards in New South Wales, South Australia, and Victoria. Unoaked wines (50 kg scale) were produced under controlled conditions. The wines had a wide range of smoke flavour intensities rated by a trained sensory panel. Statistical models based on guaiacol, o-cresol, m-cresol, p-cresol, and some glycosides gave good predictions of smoke flavour intensity, with a slightly different optimal model for each cultivar. Subsequently, critical concentrations for quality defects were estimated to provide a guide for producers. A subset of smoke exposure markers in wine grapes affected by smoke from bushfires can be used to predict the degree of smoke flavour in wine. This information provides a first guide for assessing the risk of producing smoke tainted wine from smoke-exposed grapes.

Studies on the Effect of Oxidation on Bioactivity of Phenolics and Wine Lees Extracts.

It is expected that any processing and handling of lees (e.g., drying, storage or removal of residual alcohol using various concentration techniques) will expose the material to oxidation and the consequences of oxidation on the biological activity of the lees and the lees extracts are unknown. The effects of oxidation (using horseradish peroxidase and hydrogen peroxide model system) on phenolic composition and their antioxidant and antimicrobial activities were investigated in (i) a flavonoid model system composed of catechin and grape seed tannin (Cat:GST) extracts at various ratios and (ii) in Pinot noir (PN) and Riesling (RL) wine lees samples. For the flavonoid model, oxidation had a minor or no impact on total phenol content but increased (p < 0.05) total tannin content from approximately 145 to 1200 µg epicatechin equivalent/mL. An opposite observation was found in the PN lees samples where oxidation reduced (p < 0.05) the total phenol content (TPC) by approximately 10 mg GAE/g dry matter (DM) lees. The mean degree of the polymerization (mDP) values of the oxidized flavonoid model samples ranged from 15 to 30. The Cat:GST ratio and interaction of the Cat:GST ratio with oxidation were found significantly to affect the mDP values of the flavonoid model samples (p < 0.05). Oxidation increased the mDP values in all oxidized flavonoid model samples except for Cat:GST 0:100. The mDP values of the PN lees samples ranged from 7 to 11 and remained the same after oxidation. There was no significant reduction in the antioxidant activities (DPPH and ORAC) of the model and wine lees after oxidation except the PN1 lees sample (decreased from 3.5 to 2.8 mg Trolox equivalent/g DM extracts). In addition, no correlation was observed between mDP (approximately 10 to 30) and DPPH (0.09) and ORAC assay (-0.22), which indicates that the higher mDP resulted in a poor ability to scavenge DPPH· and AAPH· free radicals. Antimicrobial activities of the flavonoid model were found to be improved after the oxidation treatment against S. aureus and E. coli with minimum inhibition concentration (MIC) of 1.56 and 0.39 mg/mL. This may indicate that new compounds were formed during the oxidation treatment, and these compounds showed more effective microbicidal activity. LC-MS work is required in the future to identify the compounds that are newly formed during the oxidation of the lees.

Identification and expression analysis of invertase family genes during grape (Vitis vinifera L.) berry development under CPPU and GA treatment.

Sugar is crucial for grape berry, whether used for fresh food or wine. However, berry enlargement treatment with forchlorfenuron (N-(2-chloro4-pyridyl)-N'-phenylurea) (CPPU, a synthetic cytokinin) and gibberellin (GA) always had adverse effects on sugar accumulation in some grape varieties, especially CPPU. Therefore exploring the molecular mechanisms behind these adverse effects could provide a foundation for improving or developing technology to mitigate the effects of CPPU/GA treatments for grape growers. In the present study, invertase (INV) family, the key gene controlling sugar accumulation, was identified and characterized on the latest annotated grape genome. Their express pattern, as well as invertase activity and sugar content, were analyzed during grape berry development under CPPU and GA3 treatment to explore the potential role of INV members under berry enlargement treatment in grapes. Eighteen INV genes were identified and divided into two sub-families: 10 neutral INV genes (Vv-A/N-INV1-10) and 8 acid INV genes containing 5 CWINV (VvCWINV1-5) and 3 VIN (VvVIN1-3). At the early development stage, both CPPU and GA3 treatment decreased the hexose level in berries of 'Pinot Noir' grape, whereas the activity of three types inverstase (soluble acid INV, insoluble acid INV, and neutral INV) increased. Correspondingly, most of INV members were up-regulated by GA3 /CPPU application at least one sampling time point during early berry development, including VvCWINV1, 2, 3, 4, 5, VvVIN1, 2, 3 and Vv-A/N-INV1, 2, 5, 6, 7, 8, 10. At maturity, the sugar content in CPPU-treated berries is still lower than that in the control. Soluble acid INV and neutral INV, rather than insoluble acid INV, presented lower activity in CPPU-treated berries. Meanwhile, several corresponding genes, such as VvVIN2 and Vv-A/N-INV2, 8, 10 in ripening berries were obviously down-regulated by CPPU treatment. These results suggested that most of INV members could be triggered by berry enlargement treatment during early berry development, whereas VvVINs and Vv-A/N-INVs, but not VvCWINVs, could be the limiting factor resulting in decreased sugar accumulation in CPPU-treated berries at maturity. In conclusion, this study identified the INV family on the latest annotated grape genome and selected several potential members involving in the limit of CPPU on final sugar accumulation in grape berry. These results provide candidate genes for further study of the molecular regulation of CPPU and GA on sugar accumulation in grape.

Two ways to die: Species dependent PCD modes in grapevine cells

Programmed cell death (PCD) is considered as a hallmark of strain-specific immunity. In contrast, generic basal immunity is thought to act without PCD. This classical bifurcation has been questioned during recent years. Likewise, the role of jasmonate signalling for these two modes of innate immunity has remained ambiguous. We have addressed both questions using two closely related grapevine cell lines (V. rupestris, V. vinifera cv. ‘Pinot Noir’) that contrast in their cell-death response to the bacterial elicitor harpin and the hormonal trigger methyl jasmonate (MeJA). We follow different cellular (loss of membrane integrity, mortality), molecular (induction of transcripts for phytoalexin synthesis and for metacaspases), as well as metabolic (sphingolipid profiles) responses to the two triggers in the two cell lines. The role of NADPH oxidases and induction of transcripts for the class-II metacaspases MC5 differ qualitatively between the two cell lines. We tested a possible role of sphingolipid metabolism but can rule this out. We propose a model, where V. rupestris, originating from co-evolution with several biotrophic pathogens, readily activates a hypersensitive cell death in response to harpin, while the context of MeJA-induced cell death in ‘Pinot Noir’ might not be related to immunity at all. We propose that the underlying signalling is modular, recruiting metacaspases differently depending on upstream signalling.

Total Lipids and Fatty Acids in Major New Zealand Grape Varieties during Ripening, Prolonged Pomace Contacts and Ethanolic Extractions Mimicking Fermentation

Despite the important roles of lipids in winemaking, changes in lipids during grape ripening are largely unknown for New Zealand (NZ) varieties. Therefore, we aimed to determine the fatty acid profiles and total lipid content in two of NZ’s major grape varieties. Using gas chromatography–mass spectrometry, absolute quantification of 45 fatty acids was determined in Sauvignon blanc (SB) and Pinot noir (PN) grapes harvested at two different stages of ripeness. Lipid concentrations were as high as 0.4 g/g in seeds of both varieties, while pulp contained the least amount. Many unsaturated fatty acids were present, particularly in grape seeds, while skin contained relatively higher amounts of saturated fatty acids that increased throughout ripening. For both varieties, a significant increase in lipid concentration was observed in grapes harvested at the later stage of ripeness, indicating an association between lipids and grape maturity, and providing a novel insight about the use of total lipids as another parameter of grape ripeness. A variety-specific trend in the development and extraction of grape lipids was found from the analysis of the must and ethanolic extracts. Lipid extraction increased linearly with the ethanol concentration and with the extended pomace contact time. More lipids were extracted from the SB pomace to the must than PN within 144 h, suggesting a must matrix effect on lipid extraction. The knowledge generated here is relevant to both industry and academia and can be used to develop lipid diversification strategies to produce different wine styles.

Upcycling flavanol-rich Chardonnay and Pinot noir grape thinned clusters as potentially functional food ingredients in cocoa-based products.

In California, over 3.4 million tons of wine grapes were crushed in 2020 while every year roughly 20% of the grape mass goes unused. Grape cluster thinning at veraison, a common agricultural practice to ensure color homogeneity in wine grapes, adds to the production costs and generates substantial on-farm loss during grapevine cultivation in which the health-promoting values of thinned clusters (unripe grapes) are usually overlooked. In particular, the health-promoting properties of flavanol monomers, specifically (+)-catechin and (-)-epicatechin, and their oligomeric procyanidins, have been extensively studied in cocoa and chocolate but not so much in grape thinned clusters in recent epidemiology studies. As part of the important agricultural by-products upcycling effort, the current study compared thinned clusters from Chardonnay and Pinot noir, two premium wine grape varieties cultivated in California, to a traditionally Dutch (alkalized) cocoa powder that has been widely used in food applications. Thinned cluster fractions from Chardonnay and Pinot noir grapes grown in the North Coast of California showed much higher concentrations of flavanol monomers and procyanidins, with 208.8-763.5 times more (+)-catechin, 3.4-19.4 times more (-)-epicatechin, and 3.8-12.3 times more procyanidins (by degree of polymerization DP 1-7) than those in the traditionally Dutch cocoa powder. These flavanol-rich thinned clusters that are also considered as plant-based natural products suggested great potential to be functional ingredients in cocoa-based products-which have been ubiquitously perceived as flavanol-rich products by consumers-to enhance their overall dietary flavanol content.

An improved reference of the grapevine genome reasserts the origin of the PN40024 highly-homozygous genotype.

The genome sequence of the diploid and highly homozygous V. vinifera genotype PN40024 serves as the reference for many grapevine studies. Despite several improvements to the PN40024 genome assembly, its current version PN12X.v2 is quite fragmented and only represents the haploid state of the genome with mixed haplotypes. In fact, being nearly homozygous, this genome contains several heterozygous regions that are yet to be resolved. Taking the opportunity of improvements that long-read sequencing technologies offer to fully discriminate haplotype sequences, an improved version of the reference, called PN40024.v4, was generated. Through incorporating long genomic sequencing reads to the assembly, the continuity of the 12X.v2 scaffolds was highly increased with a total number decreasing from 2,059 to 640 and a reduction in N bases of 88%. Additionally, the full alternative haplotype sequence was built for the first time, the chromosome anchoring was improved and the number of unplaced scaffolds was reduced by half. To obtain a high-quality gene annotation that outperforms previous versions, a liftover approach was complemented with an optimized annotation workflow for Vitis. Integration of the gene reference catalogue and its manual curation have also assisted in improving the annotation, while defining the most reliable estimation of 35,230 genes to date. Finally, we demonstrated that PN40024 resulted from nine selfings of cv. 'Helfensteiner' (cross of cv. 'Pinot noir' and 'Schiava grossa') instead of a single 'Pinot noir'. These advances will help maintain the PN40024 genome as a gold-standard reference, also contributing towards the eventual elaboration of the grapevine pangenome.

Assessing the Leaf Blade Nutrient Status of Pinot Noir Using Hyperspectral Reflectance and Machine Learning Models

Monitoring grape nutrient status, from flowering to veraison, is important for viticulturists when implementing vineyard management strategies, in order to produce quality wines. However, traditional methods for measuring nutrient elements incur high labour costs. The aim of this study is to explore the potential of predicting grapevine leaf blade nutrient concentration based on hyperspectral data. Leaf blades were collected at two Pinot Noir commercial vineyards at Martinborough, New Zealand. The leaf blade spectral data were obtained with a handheld spectroradiometer, to evaluate surface reflectance and derivative spectra in the spectrum range between 400 and 2400 nm. Afterwards, leaf blades nutrient concentrations (N, P, K, Ca, and Mg) were measured, and their relationships with the hyperspectral data were modelled by machine learning models; partial least squares regression (PLSR), random forest regression (RFR), and support vector regression (SVR) were used. Pearson correlation and recursive feature elimination, based on cross-validation, were used as feature selection methods for RFR and SVR, to improve the model’s performance. The variable importance score of PLSR, and permutation variable importance of RFR and SVR, were used to determine the most sensitive wavelengths, or spectral regions related to each biochemical variable. The results showed that the best predictive performance for leaf blade N concentration was based on PLSR to raw reflectance data (R2 = 0.66; RMSE = 0.15%). The combination of support vector regression with the Pearson correlation selected method and second derivative reflectance provided a high accuracy for K and Ca modelling (R2 = 0.7; RMSE = 0.06%; R2 = 0.62; RMSE = 0.11%, respectively). However, the modelling performance for P and Mg, by different feature groups and variable selection methods, was poor (R2 = 0.15; RMSE = 0.02%; R2 = 0.43; RMSE = 0.43%, respectively). Thus, a larger dataset is needed for improving the prediction of P and Mg. The results indicated that for Pinot Noir leaf blades, raw reflectance data had potential for the prediction of N concentration, while the second-derivative spectra were more suitable to predict K and Ca. This study led to the provision of rapid and non-destructive measurements of grapevine leaf nutrient status.