This research entails a comprehensive computational simulation aimed at comparing the performance of microchannel heat sinks (MCHS) featuring 55-pin fins, characterized by constant circular pins with a diameter of 15µm, uniform spacing of 50µm, and variable heights ranging from 60 to 35µm. The primary objective was to assess the performance of these models with a reference Mini channel. Mesh independence validation was meticulously executed on MCHS with pin fins to ascertain the accuracy of the computational findings. The simulation encompassed seven Reynolds numbers within the range of 500–1500. The performance evaluation incorporated hydraulic and thermal factors, specifically pressure drop, Nusselt number, and the thermal performance factor (TPF). A holistic assessment of overall performance was achieved through the establishment of a heat sink thermal performance factor, accounting for both hydraulic and thermal aspects. The optimal geometry was determined based on this factor, and corresponding visual representations were generated to illustrate these findings.