Small piezoelectric wind-induced vibration energy harvesting systems have been widely studied to provide long-term sustainable green energy for a large number of wireless sensor network nodes. Piezoelectric materials are commonly utilized as transducers because of their ability to produce high output power density and their simple structure, but they are prone to material fracture under large deformation conditions. This paper proposes a magnetic boundary modulated stepped beam wind energy harvesting system. On the one hand, the design incorporates a composite stepped beam with both high- and low-stiffness components, allowing for efficient vibration and electrical energy output at low wind speeds. On the other hand, a magnetic boundary constraint mechanism is constructed to prevent the piezoelectric sheet from breaking due to excessive deformation. Experiments have confirmed that the effective operational wind speed range of the harvester with magnetic boundary constraints is doubled compared to that of the harvester without magnetic boundary constraints. Furthermore, by adjusting the magnetic pole spacing of the boundary, the harvesting system can generate sufficiently high output power under high-wind-speed conditions without damaging the piezoelectric sheet.