ABSTRACTPhysicochemical parameters, chlorophyll a (Chl a) concentration, and phytoplankton community structure were assessed in the Wouri estuarine mangrove sector of the Douala Bassa Industrial Zone of Cameroon over two seasons. Three sets of water samples were collected from 10 sites for these analyses. Some physicochemical parameters were measured in situ using multiparameter equipment (HANNA 8289). The data were subjected to analyses of significant difference by an independent sample t‐test. Correlation and principal component analysis conducted between variables Temperature, salinity, total dissolved solids (TDS), resistivity, and turbidity showed a strong seasonal variation among sites. Mean Chl a concentration (3.7–48.29 µg/L for dry and 0.1–20.1 µg/L for rainy season) revealed that most sites were eutrophic, with the Euglenophycean index less than 1 in all the sites. Phytoplankton species richness exhibited seasonal and spatial variation, with a total of 74 taxa and 51 taxa for the dry and rainy seasons, respectively. The division Bacillariophyta was the most abundant, with 19 families and 24 species during the dry season and 17 families and 16 species during the rainy season. Other phytoplankton divisions present included Chlorophyta > Cyanophyta > Charophyta > > Myzozoa > Euglenophyta in the dry season; the less diverse divisions in the rainy season were Rhodophyta > Cryptophyta > Xanthophyta > Euglenophyta. High concentrations of nutrients and the presence of eutrophic species such as Microcystis aeruginosa suggest pollution and a need to monitor activities carried out along the water course with respect to the quantity and quality of industrial effluents discharged into the stream. The observed eutrophication explains the noxious odor across the city of Douala, especially during the dry season. The human health implications could be severe, with communities dependent on this contaminated stream for fish and other necessities a scenario that repeats itself in communities dependent on urban wetlands in industrial zones globally.