Phylogenetic Similarity Research Articles

Novel Coronavirus COVID-19: Current Evidence and Evolving Strategies.

Novel Coronavirus COVID-19: Current Evidence and Evolving Strategies.

Ecological and evolutionary drivers of haemoplasma infection and bacterial genotype sharing in a Neotropical bat community.

Most emerging pathogens can infect multiple species, underlining the importance of understanding the ecological and evolutionary factors that allow some hosts to harbour greater infection prevalence and share pathogens with other species. However, our understanding of pathogen jumps is based primarily around viruses, despite bacteria accounting for the greatest proportion of zoonoses. Because bacterial pathogens in bats (order Chiroptera) can have conservation and human health consequences, studies that examine the ecological and evolutionary drivers of bacterial prevalence and barriers to pathogen sharing are crucially needed. Here were studied haemotropic Mycoplasma spp. (i.e., haemoplasmas) across a species‐rich bat community in Belize over two years. Across 469 bats spanning 33 species, half of individuals and two‐thirds of species were haemoplasma positive. Infection prevalence was higher for males and for species with larger body mass and colony sizes. Haemoplasmas displayed high genetic diversity (21 novel genotypes) and strong host specificity. Evolutionary patterns supported codivergence of bats and bacterial genotypes alongside phylogenetically constrained host shifts. Bat species centrality to the network of shared haemoplasma genotypes was phylogenetically clustered and unrelated to prevalence, further suggesting rare—but detectable—bacterial sharing between species. Our study highlights the importance of using fine phylogenetic scales when assessing host specificity and suggests phylogenetic similarity may play a key role in host shifts not only for viruses but also for bacteria. Such work more broadly contributes to increasing efforts to understand cross‐species transmission and the epidemiological consequences of bacterial pathogens.

AGA Rapid Recommendations for Gastrointestinal Procedures During the COVID-19 Pandemic

Abbreviations used in this paper AGAAmerican Gastroenterological AssociationCDCCenters for Disease Control and PreventionCIconfidence intervalCOVID-19coronavirus disease 2019GIgastrointestinalGRADEGrading of Recommendations Assessment, Development and EvaluationMERS-CoVMiddle East respiratory syndrome–related coronavirusORodds ratioPAPRpowered air-purifying respiratorPPEpersonal protective equipmentRRrisk ratioSARS-CoV-2severe acute respiratory syndrome coronavirus 2WHOWorld Health Organization

Visual TreeCmp: Comprehensive Comparison of Phylogenetic Trees on the Web

Abstract We present Visual TreeCmp—a package of applications for comparing phylogenetic tree sets. Visual TreeCmp includes a graphical web interface allowing the visualization of compared trees and command line application extended by comparison methods recently proposed in the literature. The phylogenetic tree similarity analysis in Visual TreeCmp can be performed using eighteen metrics, of which 11 are dedicated to rooted trees and seven to the unrooted ones. Additionally, in the case of different sets of labels, the compared trees can be pruned so that the sets are identical. The Visual TreeCmp is dedicated to people who need a universal and easy‐to‐use tool designed to compare arbitrary (not necessary binary) phylogenetic trees. An example of its use in a supertree accuracy analysis is described in section 3. The Visual TreeCmp package Web application is available at: (https://eti.pg.edu.pl/TreeCmp), and its source codes available under the GNU license can be reached through several repositories located at: (https://github.com/TreeCmp).

Assessing the potential for indirect interactions between tropical tree species via shared insect seed predators

AbstractNatural enemies of plants have the potential to influence the dynamics of plant populations and the structure of plant communities. In diverse tropical forests, research on the effects of plant enemies has largely focused on the diversity‐enhancing effects of highly specialized enemies, while the community‐level effects of enemies with broader diets have rarely been considered. We investigated the community of insect seed predators interacting with seven tree species in the family Lauraceae on Barro Colorado Island (Panama). We present one of the first quantitative food webs for pre‐dispersal insect seed predators and their host plants, and use the information in the web to assess the potential for indirect interactions between the tree species. Our data suggest that there is high potential for indirect interactions between Lauraceae species via their shared seed predators. The strength and direction of these interactions are largely unrelated to the phylogenetic distance and trait similarity between species but are likely governed by the volume of fruit produced by each tree species.Abstract in Spanish is available with online material.

Interguild interactions between a non‐native phloem feeder and a native outbreaking defoliator

1. Competitive and synergistic interactions directly or indirectly drive community dynamics of herbivorous insects. Novel interactions between non‐native and native insects are unpredictable and not fully understood.2. We used manipulative experiments on mature red spruce trees to test interactions between a non‐native phloem feeding insect, the brown spruce longhorn beetle (BSLB), and an outbreaking native defoliator, the spruce budworm. We subjected treatment trees to defoliation by three densities of spruce budworm larvae. Treatment trees were: stressed by (i) girdling (to mimic beetle feeding) or (ii) girdling + BSLB before spruce budworm larvae were introduced on branches in sleeve cages. Budworm larvae then fed on foliage and developed to pupation. We assessed all branches for budworm performance, defoliation, shoot production and shoot growth.3. Shoot length did not differ in response to stress from girdling or BSLB infestation. Neither stress from girdling, nor interactions with BSLB feeding affected spruce budworm performance or defoliation. Intraspecific impacts on performance and defoliation in relation to budworm density were stronger than the effects of tree stress.4. Prior infestation of red spruce by BSLB in our experimental set‐up did not influence spruce budworm performance. BSLB is a successful invader that has blended into its novel ecological niche because of ecological and phylogenetic similarities with a native congener, Tetropium cinnamopterum.5. Outbreaks by BSLB will not likely impede or facilitate spruce budworm outbreaks if they co‐occur. It would be useful to evaluate the reverse scenario of BSLB success after defoliation stress by spruce budworm.

Phylogenetics and seed morphology of AfricanNymphoides(Menyanthaceae)

We evaluated the boundaries amongNymphoides(Menyanthaceae) species in Africa, a region where the genus has received relatively little attention. We gathered morphological data from seeds using light and scanning electron microscopy, and we conducted molecular phylogenetic analyses using nuclear sequence data from the internal transcribed spacer (ITS) region. Morphological and molecular features distinguished six species and affirmed their respective geographic ranges. No African specimens were attributable toNymphoides indica, even though this paleotropical species previously had been understood to grow in Africa. We establish the new combinationNymphoides senegalensis(G. Don) Tippery, based on an established African basionym, to accommodate the specimens formerly identified asN. indica. Phylogenetic analyses resolved two distinct clades containing African species. The majority of African species are closely related to neotropical species, with which they share similar petal ornamentation. The morphologically distinctN. ezannoishares floral and phylogenetic similarity with species from North America and Asia. Results presented here support prior hypotheses that allopolyploid species in the Americas may have originated from one or more parental lineages in Africa. Seed morphological characters remain some of the most reliable features for identifying species, particularly for herbarium specimens lacking observable floral characters.

Ranking Docking Models by Coevolution Analysis

Protein-protein interactions are critical for diverse cell processes. One of the most used approaches to solve these protein-protein interactions at the atomic level is protein docking. The generation of false positive hits is however well documented drawback of docking algorithms, due the limitations of the scoring function in describing solvation energies and protein flexibility. Protein coevolution analysis can be useful to contour this problem. Protein coevolution arises from the concept of macromolecular coevolution and refers to amino acids correlated mutations that stems from natural selection. The trail of coevolution can be find in a multiple sequence alignment (MSA), by analysis which measure the entropy of its columns or the correlations of the species homologous sequences. Thus, we combined these analyses and docking calculations to improve docking modeling. Looking for new developments in the field, we have created a software, the Docking Score Module (DSM). Specifically, DSM takes as input 3D models generated from docking programs and a based on proteins models. At the heart of the algorithm, new sub-alignments exclusively containing amino acid positions which are in protein-protein interface are generated for each docking model. For each new sub-alignment, DSM calculates mutual information (MI) as defined from Shannon's information entropies, and correlation index (r), which reports phylogenetic similarity of protein sequences in MSA. The output consists of a text file with job information and a plot, in which models are weighted by MI or r. For the case studies, we docked eleven complexes using different docking web servers. Across a space of docking models and taking into consideration the value of MI and r, best ranked models in DSM contain the biggest number of native contacts and are closer to the target complex.

Parasites of veterinary importance from domestic animals in uMkhanyakude district of KwaZulu-Natal province.

This study investigated the occurrence and phylogenetic relationship of protozoan parasites and Ehrlichia infecting domestic animals from three municipalities in uMkhanyakude district of KwaZulu-Natal province, South Africa. A total of 208 blood samples collected from clinically healthy cattle, sheep, goats and dogs from uMkhanyakude district were examined by polymerase chain reaction (PCR) assays, using either genus or species-specific primers to determine the occurrence and phylogenetic relationship of various protozoan parasites and Ehrlichia of veterinary importance. A total of 5/109 (4.6%) cattle were PCR-positive for the presence of Toxoplasma gondii, 33/109 (30.3%) for Babesia bovis, 24/109 (22.02%) for Babesia bigemina and 20/109 (18.3%) for Trypanosoma sp., while 3/10 (30%) of sheep were PCR-positive for Theileria ovis and none of the goats were positive for any of the detected pathogens. The co-infection of 4/109 (3.7%) B. bovis and B. bigemina was detected in cattle. Only Ehrlichia canis was detected in dogs with infection rate of 20/48 (41.7%). Sequences of PCR-positive isolates (B. bovis, B. bigemina, E. canis, T. ovis and T. gondii) showed that they were closely related to their relevant species from various countries. These findings have expanded our knowledge about the prevalence and phylogenetic similarity between protozoan parasites and Ehrlichia isolates of South African origin. To date, this is the first study in South Africa to detect T. gondii infections from cattle blood using PCR.

Molecular characterization of contagious ecthyma virus (CEV) isolated from goat and cross-protection studies

Contagious ecthyma (CE) is a zoonotic viral infection caused by the Parapoxvirus in sheep and goats which is classified in the family of Poxviridae. In this study, the Penorf CE vaccine strain that originated from lambs (PKCE1 strain) and three CE strains (O-CEV1, O-CEV2, O-CEV3) originated from kids were used for molecular characterization and cross-protection studies. A phylogenetic similarity has been investigated by comparing the B2L gene of CE viruses originated from kids and lambs. It was observed that the isolates O-CEV1 and O-CEV2 had a similar DNA sequence (100%) whereas the other isolate, O-CEV3 had a different DNA sequence from the others, and the proportion of the difference between them was 2.6% as stated in the similarity index. The phylogenic evaluation revealed that CE viruses were not species specific and have different genotypes in lambs and kids in Turkey. Penorf vaccine strain which is still known as lamb origin was found to be also kid origin. In the pathogenity studies in kids and lambs, there was no rise in the body temperatures of lambs and kids and hyperemia, vesicles and pustules occurred in the scarified skin regions from the second day of the epruvation. In addition to these findings, it was determined that the healing in lesions occurred after the scabs fell off beginning from the 38th to 55th days of the study. At the end of the this study, the presence of CE strains with different pathogenicity properties was revealed. In goats vaccinated with Penorf vaccine, protection to O-CEV3 field isolate has been observed, but not obtained protection to PK-CK1 strain. As a result, the phylogenic evaluation revealed that CE viruses were not species specific and have different genotypes in lambs and kids in Turkey. The Penorf vaccine strain, which is still known to be of lamb origin, was found to be of kid origin and it was not seen to protect lambs against CE disease due to the genomic differences. Therefore, it was concluded from this data that at least a bivalent CE vaccine containing lamb and kid isolates should be prepared and used for effective immunity against CE infection, especially in lambs and kids.

Complete genome and phylogenetic analysis of bovine papillomavirus type 15 in Southern Xinjiang dairy cow.

BackgroundBovine papilloma is a neoplastic disease caused by bovine papillomaviruses (BPVs), which were recently divided into 5 genera and at least 24 genotypes.ObjectivesThe complete genome sequence of BPV type 15 (BPV Aks-02), a novel putative BPV type from skin samples from infected cows in Southern Xinjiang China, was determined by collecting warty lesions, followed by DNA extraction and amplicon sequencing.MethodsDNA was analyzed initially by polymerase chain reaction (PCR) using the degenerate primers FAP59 and FAP64. The complete genome sequences of the BPV Aks-02 were amplified by PCR using the amplification primers and sequencing primers. Sequence analysis and phylogenetic analysis were performed using bio-informatic software.ResultsThe nucleotide sequence of the L1 open reading frame (ORF) of BPV Aks-02 was 75% identity to the L1 ORF of BPV-9 reference strain from GenBank. The complete genome consisted of 7,189 base pairs (G + C content of 42.50%) that encoded 5 early (E8, E7, E1, E2, and E4) and 2 late (L1 and L2) genes. The E7 protein contained a consensus CX2CX29CX2C zinc-binding domain and a LxCxE motif. Among the different members of this group, the percentages of the complete genome and ORFs (including 5 early and 2 late ORFs) sequence identity of BPV Aks-02 were closer to the genus Xipapillomavirus 1 of the Xipapillomavirus genus. Phylogenetic analysis and sequence similarities based on the L1 ORF of BPV Aks-02 revealed the same cluster.ConclusionsThe results suggest that BPV type (BPV Aks-02) clustered with members of the Xipapillomavirus genus as BPV 15 and were closely related to Xipapillomavirus 1.

Preliminary Studies on the Oral And Rectal Aerobic Bacteria and Antimicrobial Resistance of Some Non-Human Primates in Abeokuta

Non-Human Primates are one of the most displayed exhibits in zoological facilities in Nigeria. They share phylogenetic similarities with humans and a high probability of pathogen transfer exists between humans and these species during zoo visit. The resident microbial flora plays a vital part in animal health. A total of 36 swab (18 oral and 18 rectal) samples were collected from anaesthetised apparently healthy NHPs of the family Cercopithecidae (sub family Cercopithecinae) from two urban wildlife facilities. Standard bacteriological procedures were used in the isolation and identification of the bacteria. Antimicrobial susceptibility testing was carried out using disc diffusion method according to Bauer-Kirby technique. All the samples yielded at least one bacterial organism. The oral swabs had 69.7% Gram positive and 30.3% Gram negative organisms while the rectal samples had 38.8% and 61.2% of Gram positive and negative organism respectively. The bacteria included; Bacillus spp., Staphylococcus saprophyticus, Micrococcus luteus, Proteus spp, Enterococcus faecalis, Escherichia coli, Klebsiella oxytoca, Citrobacter braakii, Serratia odorifera and Aeromonas hydrophila. . Antimicrobial susceptibility testing revealed high susceptibility of the isolates to ciprofloxacin (73.2%), sparfloxacin (70.7%), ofloxacin and pefloxacin (67.1%) and gentamycin (53.7%) while a high resistance was recorded against augmentin, amoxicillin, streptomycin and septrin. Some of the bacteria showed multidrug resistance to many of the antimicrobials. Isolation of cultivable bacteria with multidrug resistance from the oral and rectal orifices of NHPs strengthens the need for holistic sanitary and management regulations in zoological facilities housing these animals bearing in mind the probable routes of transmission of identified organisms.

Bacterial steroid-17,20-desmolase is a taxonomically rare enzymatic pathway that converts prednisone to 1,4-androstanediene-3,11,17-trione, a metabolite that causes proliferation of prostate cancer cells

The adrenal gland has traditionally been viewed as a source of “weak androgens”; however, emerging evidence indicates 11-oxy-androgens of adrenal origin are metabolized in peripheral tissues to potent androgens. Also emerging is the role of gut bacteria in the conversion of C21 glucocorticoids to 11-oxygenated C19 androgens. Clostridium scindens ATCC 35,704 is a gut microbe capable of converting cortisol into 11-oxy-androgens by cleaving the side-chain. The desA and desB genes encode steroid-17,20-desmolase. Our prior study indicated that the urinary tract bacterium, Propionimicrobium lymphophilum ACS-093-V-SCH5 encodes desAB and converts cortisol to 11β-hydroxyandrostenedione. We wanted to determine how widespread this function occurs in the human microbiome. Phylogenetic and sequence similarity network analyses indicated that the steroid-17,20-desmolase pathway is taxonomically rare and located in gut and urogenital microbiomes. Two microbes from each of these niches, C. scindens and Propionimicrobium lymphophilum, respectively, were screened for activity against endogenous (cortisol, cortisone, and allotetrahydrocortisol) and exogenous (prednisone, prednisolone, dexamethasone, and 9-fluorocortisol) glucocorticoids. LC/MS analysis showed that both microbes were able to side-chain cleave all glucocorticoids, forming 11-oxy-androgens. Pure recombinant DesAB from C. scindens showed the highest activity against prednisone, a commonly prescribed glucocorticoid. In addition, 0.1 nM 1,4-androstadiene-3,11,17-trione, bacterial side-chain cleavage product of prednisone, showed significant proliferation relative to vehicle in androgen-dependent growth LNCaP prostate cancer cells after 24 h (2.3 fold; P < 0.01) and 72 h (1.6 fold; P < 0.01). Taken together, DesAB-expressing microbes may be an overlooked source of androgens in the body, potentially contributing to various disease states, such as prostate cancer.

Development of biological soil crust prompts convergent succession of prokaryotic communities

Biological soil crusts (BSCs) are vital components of desert ecosystems. Developments of BSCs enrich nutrients, create niche differentiation and drive the variations of soil microbiota. However, how BSC developments drive the dynamics of soil prokaryotic and fungal community similarities and community assemblages remain fully elusive. Here, we evaluated the variations of microbial taxonomic and phylogenetic similarities with the developmental stages of BSC. Results showed that prokaryotic communities tended to be convergent in later BSC stages, mainly driven by the environmental filtering through nutrient accumulation. Deterministic processes and stochastic processes dominated in prokaryotic and fungal community assemblages, respectively. Most prokaryotic generalists (e.g., Actinobacteria, Proteobacteria and Thaumarcaeota) and generalists of lichenized fungi were more abundant in later BSC stages. Some prokaryotic generalists (e.g., Bacteroids, Cyanobacteria, Deltaproteobacteria) showed possible symbiotic (positive) relationships with generalists of lichenized fungi. BSC development promoted the abundances of prokaryotic generalists, but reduced prokaryotic specialists and both fungal generalists and specialists through increasing primary productivity. Additionally, prokaryotic co-occurrence networks (Co-MENs) tended to be less complex and less connected. Overall, the increases of prokaryotic generalists and decreases of specialists and less complex Co-MENs supported that prokaryotic communities were more convergent in later BSC stages. Our results provided mechanistic understandings of the interactions among microbial community succession, niche specialization and BSC development.

The spatial analysis of biological interactions: morphological variation responding to the co‐occurrence of competitors and resources

By sharing geographic space, species are forced to interact with one another and the contribution of this process to evolutionary and ecological patterns of individual species is not fully understood. At the same time, species turnover makes that species composition varies from one area to another, so the analysis of biological interaction cannot be uncoupled from the spatial context. This is particularly important for clades that show high degree of specialization such as hummingbirds, where any variation in biotic pressures might lead to changes in morphology. Here, we describe the influence of biological interactions on the morphology of Hylocharis leucotis by simultaneously considering potential competition and diet resources. We characterized the extent of local potential competition and local available floral resources by correlating two measurements of hummingbird diversity, floral resources and the size of morphological space of H. leucotis along its geographic distribution. We found that H. leucotis shows an important morphological variability across its range and two groups can be recognized. Surprisingly, morphological variation is not always linked to local hummingbird richness or the phylogenetic similarity of. Only in the southern part of its distribution, H. leucotis is morphologically more variable in those communities where it coexist with closely related hummingbird species. We also found that morphological variation in H. leucotis is independent from the availability of floral resources. Our results suggest that abiotic factors might be responsible for morphological differences across populations in Hylocharis leucotis being biological interactions of minor importance.

Investigation of direct and indirect transfer of microbiomes between individuals

The human microbiome encompasses the fungi, bacteria and viruses that live on, within, and immediately surrounding the body. Microbiomes have potential utility in forensic science as an evidentiary tool to link or exclude persons of interest associated with criminal activities. Research has shown the microbiome is individualised, and that personal microbial signatures can be recovered from surfaces such as phones, shoes and fabrics. Before the human microbiome may be used as an investigative tool, further research is required to investigate the utility and potential limitations surrounding microbial profiling. This includes the detectability of microbial transfer between individuals or items, the associated risks (such as contamination events) and the applicability of microbial profiling for forensic purposes.This research aimed to identify whether an individual’s distinguishable microbiome could be transferred to another individual and onto substrates, and vice versa. Paper, cotton, and glass surfaces were chosen to represent a range of substrate matrices. The study involved six participants placed into three pairs; participants took part in two modes of transfer. Transfer Mode 1 involved the pair shaking hands, followed by rubbing a substrate in their right hand. Transfer Mode 2 involved individuals rubbing a substrate in their left hand, swapping substrates with their partner and then rubbing the swapped substrate in their left hand. 16S rRNA sequencing was performed on the extracted microbial DNA from participant and substrate samples. Quantitative Insights into Microbial Ecology 2 (QIIME 2) was used for sequence quality control and beta (between-sample) diversity analyses and taxonomic assignment.Principal Coordinate Analysis (PCoA) based on Jaccard distances was visualised through Emperor software to determine the phylogenetic similarity of bacterial communities between participants and among participant pairs. Statistical testing through PERMANOVA revealed significant differences in the Jaccard distances between each participant pair (P < 0.001), highlighting not only the potential distinguishability of skin microbiomes among individuals, but also the clustering effect observed between participant pairs due to the potential transfer of hand-associated microbiomes between individuals. The study demonstrated that transfer of the human skin microbiome had occurred between all participant pairs, regardless of substrate type or mode of transfer.

Climate and evolutionary history define the phylogenetic diversity of vegetation types in the central region of South America.

In South America the biogeographic history has produced different biomes with different vegetation types and distinct floras. As these vegetation types may diverge in evolutionary histories, we analysed how alpha and beta phylogenetic diversity vary across them and determine the main drivers of variation in phylogenetic diversity. To this end, we compiled a list of 205 sites and 1222 tree species spread over four biomes and eight vegetation types in central South America. For each site we evaluated six measures of evolutionary alpha diversity (species richness, phylogenetic diversity sensu stricto and the standardized effect size of phylogenetic diversity, mean phylogenetic distance and mean nearest taxon distance) and beta diversity (phylogenetic Sorensen's similarity). We checked the influence of spatial and environmental variables using generalized least squares models. The greatest phylogenetic differentiation was found between west and east of central South America, mainly between the Chaco communities and the other vegetation types, suggesting that species found in this biome come from different lineages, comparing with the others vegetation types. Our results also showed a clustered phylogenetic structure for the Dry Chaco woodlands, which may be associated with harsh environmental conditions. In addition to historical process, climatic conditions are the main drivers shaping phylogenetic patterns among the distinct vegetation types. Understanding patterns of phylogenetic diversity and distribution can greatly improve conservation planning and management since it allows the conservation of unique biome characteristics.

Rheinheimera pleomorphica sp. nov., a Novel Alkali-Tolerant Bacteria Isolated from Chilika Lake, India.

A novel Gram-negative gamma-proteobacterium, non-sporulating motile, rod or coccus-shaped bacterium designated as strain PKS7T was isolated from a sediment sample collected from Chilika Lake, Odisha, India and characterized taxonomically using a polyphasic approach. The major quinone was Q8 and major cellular fatty acids were C16:0, C17:0, C15:1w8c, C17:1w8c, C12:03-OH. The chemotaxonomic features confirmed the isolate to be a member of genus Rheinheimera. 16SrRNA gene sequence of strain PKS7T was closest in similarity to R. aquimaris SW-353T (99.36% identity), R. muenzenbergensis E49T (98.63%), R. nanhaiensis E407-8T (98.35%), R. japonica KMM 9513T (98.35%) and R. baltica DSM-14885T (98.08%). The 16S rRNA gene sequence-based phylogenetic analysis and sequence similarity between the isolated strain and type strains also revealed its affiliation to genus Rheinheimera. DNA-DNA relatedness with closest type strain R. aquimaris SW-353T was 25.0% (±3.40) and in silico DDH showed values in the range of 17.7-37.1% with the type strains of the genus Rheinheimera for which whole genome sequence are available. Strain PKS7T was also distinguished by a multi-locus sequence analysis (MLST) by alingning gyrB gene sequences of the closest type strains of Rheinheimera. The draft genome of strain PKS7T contained 32 contigs of total size 3,963,569bp comprising of 3763 predicted coding sequences with a G + C content of 50.7mol%. Comparision of phenotypic and genotypic data with its closest neighbours and closely related species confirm the strain PKS7T to be recognised as a novel species within the genus Rheinheimera, for which the name Rheinheimera pleomorphica sp. nov. is proposed. The type strain is PKS7T (= KCTC 42365 = JCM 30460).

High plant taxonomic beta diversity and functional and phylogenetic convergence between two Neotropical inselbergs

ABSTRACTBackground: Inselbergs (granitic and gneissic rock outcrops) are common elements in the Atlantic Forest and present large taxonomic (TD), functional (FD) and phylogenetic (PD) diversity.Aims: We investigated how plant diversity changed across ecological and biogeographic scales by comparing TD, FD and PD of communities within and between two inselbergs. We expected converging FD and PD but distinct TD between outcrops, because of similar local environmental conditions in inselbergs and the long-term lineage isolation.Methods: We calculated TD, PD and FD, and partitioned diversity into α (each inselberg), β (between inselbergs) and γ (whole sample) components. Phylogenetic signal was estimated for all traits. To link environmental predictors to functional traits a redundancy analysis was run. Variation in TD, FD and PD was analysed by general linear models with patch area and the two inselbergs as predictors.Results: The inselbergs were taxonomically different, but showed convergence in their functional and phylogenetic diversity. The limited retention of phylogenetic signal suggests that different species may converge and respond similarly to environmental variables. Within inselbergs, larger patches displayed higher TD, FD and PD.Conclusions: Seeking conservation strategies for inselbergs is challenging since, despite their functional and phylogenetic similarity, endemic species make individual rock outcrops unique.

Dendritic Cells Generated From Mops condylurus, a Likely Filovirus Reservoir Host, Are Susceptible to and Activated by Zaire Ebolavirus Infection.

Ebola virus infection of human dendritic cells (DCs) induces atypical adaptive immune responses and thereby exacerbates Ebola virus disease (EVD). Human DCs, infected with Ebola virus aberrantly express low levels of the DC activation markers CD80, CD86, and MHC class II. The T cell responses ensuing are commonly anergic rather than protective against EVD. We hypothesize that DCs derived from potential reservoir hosts such as bats, which do not develop disease signs in response to Ebola virus infection, would exhibit features associated with activation. In this study, we have examined Zaire ebolavirus (EBOV) infection of DCs derived from the Angolan free-tailed bat species, Mops condylurus. This species was previously identified as permissive to EBOV infection in vivo, in the absence of disease signs. M. condylurus has also been recently implicated as the reservoir host for Bombali ebolavirus, a virus species that is closely related to EBOV. Due to the absence of pre-existing M. condylurus species-specific reagents, we characterized its de novo assembled transcriptome and defined its phylogenetic similarity to other mammals, which enabled the identification of cross-reactive reagents for M. condylurus bone marrow-derived DC (bat-BMDC) differentiation and immune cell phenotyping. Our results reveal that bat-BMDCs are susceptible to EBOV infection as determined by detection of EBOV specific viral RNA (vRNA). vRNA increased significantly 72 h after EBOV-infection and was detected in both cells and in culture supernatants. Bat-BMDC infection was further confirmed by the observation of GFP expression in DC cultures infected with a recombinant GFP-EBOV. Bat-BMDCs upregulated CD80 and chemokine ligand 3 (CCL3) transcripts in response to EBOV infection, which positively correlated with the expression levels of EBOV vRNA. In contrast to the aberrant responses to EBOV infection that are typical for human-DC, our findings from bat-BMDCs provide evidence for an immunological basis of asymptomatic EBOV infection outcomes.