Phylogenetic Research Articles

Diversity of Lignicolous Freshwater Fungi from Yuanjiang River in Yunnan (China), with the Description of Four New Species

Yuanjiang River (Red River) is one of the six major water systems in Yunnan Province, which originates from western Yunnan Province. This river system features numerous tributaries, complex terrain, and abundant natural resources. During the investigation on the diversity of lignicolous freshwater fungi in the Yuanjiang River, nine species were collected and identified, five belonging to Dothideomycetes and four to Sordariomycetes. Based on morphology and multigene phylogenetic analyses, four species, namely, Aquadictyospora aquatica, Dictyosporium fluminicola, Myrmecridium submersum, and Neomyrmecridium fusiforme, are described as new species. Dictyocheirospora aquadulcis is reported as a new national record, and Myrmecridium hydei is reported as a new habitat record. Dictyocheirospora rotunda, Halobyssothecium aquifusiforme, and Pseudohalonectria lutea were known earlier from freshwater habitats, but we described them in detail in this paper. This study contributes significantly to the understanding of the diversity of lignicolous freshwater fungi in southwestern China.

The rise of colistin-resistant bacteria isolated from animals

<p>Colistin is one of the most widely used antibiotics in the animal sector and is frequently used as an animal growth promoter. Colistin, is also the last resort for treatment of human infections caused by carbapenem-resistant bacteria. Its intensive and systematic use may have led to the occurrence and spread of colistin-resistant bacteria in animals and humans. As the discovery of new antibiotics is rare, preserving the activity of colistin has become a priority for public health authorities. Monitoring of global prevalence, mechanisms driving colistin resistance, reservoirs, and mobile genetic elements carried by colistin-resistant bacteria are essential steps in the fight against the rise of colistin-resistant bacteria. In this mini-review, we conducted a literature review on phenotypic and genotypic colistin resistance in animals and evaluated the genetic relatedness of colistin-resistant plasmids and bacteria found in animals and humans. According to phylogenetic analysis of <em>mcr</em>-producing bacteria genomes, it seems that there is indeed a transmission of <em>mcr-8.1</em>-producing bacteria between humans and animals, animals and animals, and between humans and humans.</p>

Unexpected Genetic Diversity of Nostocales (Cyanobacteria) Isolated from the Phyllosphere of the Laurel Forests in the Canary Islands (Spain)

A total of 96 strains of Nostocales (Cyanobacteria) were established from the phyllosphere of the laurel forests in the Canary Islands (Spain) and the Azores (Portugal) using enrichment media lacking combined nitrogen. The strains were characterized by light microscopy and SSU rRNA gene comparisons. Morphologically, most strains belonged to two different morphotypes, termed “Nostoc-type” and “Tolypothrix-type”. Molecular phylogenetic analysis of 527 SSU rRNA gene sequences of cyanobacteria (95 sequences established during this study plus 392 sequences from Nostocales and 40 sequences from non-heterocyte-forming cyanobacteria retrieved from the databases) revealed that none of the SSU rRNA gene sequences from the phyllosphere of the laurel forests was identical to a database sequence. In addition, the genetic diversity of the isolated strains was high, with 42 different genotypes (44% of the sequences) recognized. Among the new genotypes were also terrestrial members of the genus Nodularia as well as members of the genus Brasilonema. It is concluded that heterocyte-forming cyanobacteria represent a component of the phyllosphere that is still largely undersampled in subtropical/tropical forests.

Forensic Entomology in Jeddah: Molecular Identification of Emerging Insect Strains

Background: The precise identification of forensic insects is one of the most important aspects in forensic entomology since it is the basis for determining post-mortem intervals (PMI) and providing other valuable forensic evidence in criminal investigations. Methods: This study demonstrates the utility of DNA barcoding in accurately identifying new strains of forensic insects collected from the Jeddah Governorate. Result: High similarity percentages ranging from 98.74% to 99.68% were observed, underscoring the precision of molecular identification. The identified species included members of the Diptera (flies) and Coleoptera (beetles) orders, commonly associated with forensic cases. Notably, Phoridae sp. (Forensic_JED_21) was identified with 98.74% similarity, highlighting their role in providing valuable post-mortem interval (PMI) estimations. Physiphora alceae was identified twice (Forensic_JED_22 and Forensic_JED_24) with similarities of 99.22% and 99.07%, respectively, demonstrating the robustness of DNA barcoding. Philonthus discoideus (Forensic_JED_23) and Physiphora demandata (Forensic_JED_25) were identified with 99.68% similarity, confirming the presence of these species in the Jeddah region. Phylogenetic analysis using MEGA11 placed these strains in well-defined clades, confirming their taxonomic accuracy and evolutionary relationships. These findings align with previous research on the genetic diversity of forensic insects, adding crucial data to forensic entomology databases. This study enhances the forensic entomology framework by providing accurate species identification, essential for legal investigationsand supports the development of region-specific forensic tools through the addition of new genetic data from Jeddah.

The grey zone of taxonomy—The case of the Sikkim Myotis (Chiroptera: Vespertilionidae: Myotis sicarius), first recorded from Southeast Asia

Abstract In taxonomic works, the weight to be given to morphological, mitochondrial, or nuclear signals, and the assessment of differences as species or subspecies distinctions has also varied considerably over the past decades and is largely a subjective research decision. This apparent example of the “grey zone of taxonomy” underpins the need of critical studies of as many specimens as possible and of using both mitochondrial and nuclear genes in taxonomic-systematic studies, as phylogeny based on uniparentally inherited genes alone may not represent true evolutionary scenarios. Myotis sicarius, a species occurring thorough the Himalayan foothills was found for the first time out of South Asia, in North Vietnam. Analysis of topotypical and Vietnamese specimens revealed high mitochondrial heterogeneity – at the upper limit of the usual threshold of intraspecific difference – but only minute nuclear sequence and negligible morphological differences. Albeit the large geographic distance between the two records might suggest the existence of two putative reproductively isolated taxonomic units, based on the incongruent results we concluded that the split of geographic populations of M. sicarius into different taxa is unsupported. As a morphologically closely resembling species, we also reviewed the taxonomic status of the two morphological forms of M. annectans and synonymizing M. primula with M. annectans was also corroborated by our phylogenetic analyses.

Pathology and VP2-Based Characterization of Infectious Bursal Disease Virus Associated with an Outbreak in Layer Chickens in Ghana

Infectious bursal disease (IBD) continues to threaten poultry production globally, with highly virulent strains circulating in many parts of Africa. In this study, molecular characterization was performed on a circulating infectious bursal disease virus (IBDV) strain from an outbreak in a layer flock in Ghana. Layer chicks presented for necropsy had markedly enlarged and hemorrhagic bursae of Fabricius, with necrotic foci and catarrhal exudate on the serosal surface. Histopathology of the bursa of Fabricius revealed scattered to effacing hemorrhages on the plicae, extensive necrosis with expansion of the stroma between the follicles, and depletion of lymphocytes within the interfollicular epithelium. Reverse transcription polymerase chain reaction (RT-PCR) and subsequent sequencing of the VP2 gene showed the presence of IBDV in formalin-fixed paraffin-embedded tissues. A phylogenetic analysis compared 62 other IBDV sequences from different parts of the world and placed the Ghanaian IBDV in genogroup 3 (vvIBDV), closely related to IBDV from Nigeria. In comparison to reference vvIBDV, there were amino acid substitutions at positions 252, 254, and 300. To the best of our knowledge, this is the first report in which an IBDV from a disease outbreak in Ghana has been sequenced and compared with other IBDVs in a phylogenetic analysis.

Genome-Wide Identification and Evolutionary Analysis of Functional BBM-like Genes in Plant Species

Background/Objectives: BABY BOOM (BBM), a transcription factor from the APETALA2 (AP2) protein family, plays a critical role in somatic embryo induction and apomixis. BBM has now been widely applied to induce apomixis or enhance plant transformation and regeneration efficiency through overexpression or ectopic expression. However, the structural and functional evolutionary history of BBM genes in plants is still not well understood. Methods: The protein sequences of 10 selected plant species were used to locate the branch of BBM-Like by key domain identification and phylogenetic tree construction. The identified BBML genes were used for further conserved motif identification, gene structural analysis, miRNA binding site prediction, cis-acting element prediction, collinear analysis, protein–protein interaction network construction, three-dimensional structure modeling, molecular docking, and expression pattern analysis. Results: A total of 24 BBML proteins were identified from 10 representative plant species. Phylogenetic relationship analysis displayed that BBML proteins from eudicots and monocots were divided into two clusters, with monocots exhibiting a higher number of BBMLs. Gene duplication events indicated that whole genome/segmental duplication were the primary drivers of BBML genes’ evolution in the tested species, with purifying selection playing a key role during evolution processes. Comparative analysis of motif, domains, and gene structures revealed that most BBMLs were highly evolutionarily conserved. The expression patterns of BBML genes revealed significant tissue specificity, particularly in the root and embryo. We also constructed protein–protein interaction networks and molecular docking models to identify functional pathways and key amino acid residues of BBML proteins. The functions of BBMLs may differ between monocots and eudicots, as suggested by the functional enrichment of interacting proteins. Conclusions: Our research delved into the molecular mechanism, evolutionary relationships, functional differentiation, and expression patterns of BBML genes across plants, laying the groundwork for further investigations into the molecular properties and biological roles of BBMLs.

Life expectancy in ants explains variation in helpfulness regardless of phylogenetic relatedness

Abstract Rescue behavior aims to free a relative from danger. Ants are particularly known for such helpfulness and, perhaps not coincidentally, also show the highest level of social organization in the animal kingdom, i.e., eusociality. However, even among social species such as ants, there is a huge variation in rescue proneness and little is understood about the underlying causes of this variation. In this study, we explore the relationship between helpfulness in the form of rescue and life expectancy, focusing on 14 ant species with diverse phylogenetic backgrounds. We posit that species with longer worker life expectancies are more prone to engaging in rescue actions. To test this, we assessed worker lifespan in each species and conducted behavioral tests simulating entrapment scenarios involving a nestmate ensnared by an artificial obstacle. Observed behaviors involved contact with the nestmate, digging around it, pulling at its body parts, and biting the entrapping obstacle. Our findings reveal that species with longer worker life expectancies exhibit higher proneness to rescue endangered nestmates, irrespective of phylogenetic relatedness. Furthermore, we found no trace of a phylogenetic signal in the life expectancies or helpfulness of workers belonging to different species. The results underscore the significance of life expectancy as a key factor influencing the likelihood of rescue behavior in ants. This phenomenon warrants further investigation, given the varied physiologies, life histories, and ecologies observed among species. Nevertheless, the impact of life expectancy on behavioral patterns in social insects suggests that this parameter is likely significant across diverse taxa.

Genetic Assessment and Positioning of Algerian Barley Landraces with Respect to Landraces from the Middle East and Europe Using RAPD and SSR Markers

Landraces are a critical genetic resource for resilience breeding, offering solutions to prepare agriculture for the challenges posed by climate change. Their efficient utilisation depends on understanding their history and genetic relationships. The current study investigates the phylogenetic relationships of barley landraces from Algeria, varieties from the Near and Middle East, traditional landraces, and modern cultivars from Europe. Using a core set of 33 varieties, including the wild ancestor Hordeum spontaneum from Armenia, genetic diversity was analysed with Random Amplified Polymorphic DNA (RAPD) and Simple Sequence Repeat (SSR) markers spanning all barley chromosomes. Based on the SSR-based phylogeny, the Algerian varieties are well clustered with those from the Near East, while distinct from the European varieties. The findings from RAPD markers partially support these results. Using exclusively traditional landraces, where a region of origin can be defined, the SSR markers are analysed separately for each chromosome individually, and the resulting clades are represented by the respective region of origin. This strategy resolves qualitative differences in geographic resolution, depending on the chromosome. While marker HvB23D (chromosome 4) separated the wild H. spontaneum from all domesticated genotypes, markers Bmag19 and Hv13GIII (chromosome 3) reveal four distinct geographic clusters (Maghreb, Near and Middle East, West Europe, Central Europe). These biogeographic patterns suggest a model, where divergence of domesticated barley due to human activity interacted with introgression of individual chromosomes from wild barley, yielding adaptive diversity. These biogeographic patterns suggest a model in which the divergence of domesticated barley, driven by human activity, interacts with the introgression of chromosomes from wild barley, resulting in the creation of adaptive genetic diversity. Our research advances our knowledge of barley landraces’ functional genomics and highlights their potential in molecular breeding, particularly for developing resilient varieties suited to diverse environmental conditions.

Identification and Characterization of Endophytic Fungus DJE2023 Isolated from Banana (Musa sp. cv. Dajiao) with Potential for Biocontrol of Banana Fusarium Wilt

This study characterized an endophytic fungus, DJE2023, isolated from healthy banana sucker of the cultivar (cv.) Dajiao. Its potential as a biocontrol agent against banana Fusarium wilt was assessed, aiming to provide a novel candidate strain for the biological control of the devastating disease. The fungus was isolated using standard plant tissue separation techniques and fungal culture methods, followed by identification through morphological comparisons, multi-gene phylogenetic analyses, and molecular detection targeting Fusarium oxysporum f. sp. cubense (Foc) race 1 and race 4. Furthermore, assessments of its characteristics and antagonistic effects were conducted through pathogenicity tests, biological trait investigations, and dual-culture experiments. The results confirmed isolate DJE2023 to be a member of the Fusarium oxysporum species complex but distinct from Foc race 1 or race 4, exhibiting no pathogenicity to banana plantlets of cv. Fenza No.1 or tomato seedlings cv. money maker. Only minute and brown necrotic spots were observed at the rhizomes of banana plantlets of ‘Dajiao’ and ‘Baxijiao’ upon inoculation, contrasting markedly with the extensive necrosis induced by Foc tropical race 4 strain XJZ2 at those of banana cv Baxijiao. Notably, co-inoculation with DJE2023 and XJZ2 revealed a significantly reduced disease severity compared to inoculation with XJZ2 alone. An in vitro plate confrontation assay showed no significant antagonistic effects against Foc, indicating a suppressive effect rather than direct antagonism of DJE2023. Research on the biological characteristics of DJE2023 indicated lactose as the optimal carbon source for its growth, while maltose favored sporulation. The optimal growth temperature for this strain is 28 °C, and its spores can germinate effectively within the range of 25–45 °C and pH 4–10, demonstrating a strong alkali tolerance. Collectively, our findings suggest that DJE2023 exhibits weak or non-pathogenic properties and lacks direct antagonism against Foc, yet imparts a degree of resistance against banana Fusarium wilt. The detailed information provides valuable insight into the potential role of DJE2023 in integrated banana disease control, presenting a promising candidate for biocontrol against banana Fusarium wilt.

Molecular genetic characterization of porcine reproductive and respiratory syndrome virus outbreak in Assam, India and neighbouring regions.

Porcine reproductive and respiratory syndrome (PRRS) is a significant swine disease with no effective vaccine due to high viral mutation rates. This study investigates a natural PRRS outbreak through molecular, pathological, and serological analyses. Nineteen affected pigs were clinically examined, and 10 underwent post-mortem examination. PRRS virus (PRRSV) presence was confirmed in all tissue samples by RT-PCR targeting open reading frame (ORF) 5 and ORF7 genes. Clinical signs, especially in boars and sows, included fever, appetite loss, movement reluctance, erythematous skin patches, vomiting, and abortions in sows. Post-mortem findings highlighted lung consolidation, severe lymph node enlargement, interstitial pneumonia with mononuclear cells, macrophage accumulation and necrotic cells in alveolar spaces. Multifocal myocarditis, lymphoid follicular degeneration, and follicular necrosis were observed in the tonsil, spleen, and lymph nodes. PRRSV-specific antibodies were detected in 32.75% of serum samples, confirming the outbreak. Phylogenetic analysis of the PRRSV-ORF5 and ORF7 genes revealed a close genetic relationship between the outbreak samples from Assam and recent outbreaks in Idukki, Kerala, India (2018), and neighbouring country China, indicating the circulation of Genotype 2 virus in Assam. However, the sequences showed some differences from the isolates of Mizoram, India. In conclusion, this study provides molecular and pathological evidence of a PRRSV outbreak, confirms the presence of PRRSV-specific antibodies and viral RNA, and shed light on the virus's genetic characteristics in India.

Taxonomic novelty in Pleomonodictydaceae and new reports for Ampelomyces quisqualis (Phaeosphaeriaceae), Melomastia maolanensis and M. oleae (Pleurotremataceae)

This study introduces a novel genus Robiniigena, with its type R. hyalinospora. The specimen was collected on dead aerial branches of Robinia pseudoacacia in Italy. Based on the examination of morphology and the results of phylogenetic analyses involving nuclear 18S rDNA (SSU), nuclear 28S rDNA (LSU), nuclear rDNA ITS1-5.8S-ITS2 (ITS), translation elongation factor 1-alpha (tef1-α) and RNA polymerase II second largest subunit (rpb2) sequences, Robiniigena is referred to the family Pleomonodictydaceae (Pleosporales). It is characterized by immersed to erumpent, ostiolate ascomata, filiform, septate and cellular pseudoparaphyses, bitunicate, clavate to cylindric-clavate asci and fusiform, hyaline ascospores surrounded by a mucilaginous sheath. This research also establishes the taxonomic placement of the previously unclassified Inflatispora (Pleosporales genus incertae sedis) within the Pleomonodictydaceae. The sexual morph of Ampelomyces quisqualis (Phaeosphaeriaceae) is described for the first time and it is characterized by immersed, perithecial ascomata, a peridium comprising two layers, branched, septate and filiform pseudoparaphyses, short-pedicellate, bitunicate asci with an ocular chamber and sub-hyaline, fusiform, septate ascospores. This species, previously known only in its asexual morph, has been found as a saprobe on Sonchus sp. in Italy. Our identification of the sexual morph was based on LSU rDNA and ITS rDNA sequence data. Melomastia maolanensis (Pleurotremataceae) is reported for the first time in Thailand, collected from Chromolaena odorata, while M. oleae is documented as a new record from Duranta erecta in Thailand.

Botryobasidium bambusinum (Botryobasidiaceae, Cantharellales): a new species from Yunnan, Southwest China, based on morphology and phylogeny

ABSTRACT Botryobasidium bambusinum sp. nov. was collected in Yunnan Province, China, is described here as a new species based on its morphology and phylogeny. In this study, the taxon Botryobasidium bambusinum is characterised by its resupinate, coriaceous conidiomata with a smooth, hypochnoid, rubiginous to slightly reddish-brown hymenial surface, a slightly thick-walled basal hyphae with simple septa, subcylindrical, septate subglobose to globose, slightly thick-walled conidia measuring as 7.2–9.5 × 7–9 µm. Phylogenetic analyses of the new species were based on the internal transcribed spacer (ITS) and large subunit (nrLSU) of ribosomal DNA (rDNA) sequences. The phylogenetic tree indicated that the new species belonged to the genus Botryobasidium, and was closely related to B. gossypirubiginosum, B. rubiginosum and B. simile. Botryobasidium gossypirubiginosum differs from B. bambusinum by having a floccose to cotton conidiomata. Botryobasidium rubiginosum differentiates from B. bambusinum by having a cottony conidiomata, and ovoid to ellipsoid, larger conidia (14.5–16 × 10.5–12.5 µm vs 7.2–9.5 × 7–9 µm). Botryobasidium simile can be distinguished from B. bambusinum by having an ochraceous to fulvous conidiomata, and larger conidia (21.5–27 × 16–18 µm vs 7.2–9.5 × 7–9 µm). A detailed description, illustrations and phylogenetic analysis of the new species are provided.

Re-evaluation of Pterodactylus antiquus and Diopecephalus kochi: two troublesome taxonomic concepts

The taxonomic histories of Pterodactylus antiquus and other pterodactyloids from the Upper Jurassic plattenkalks of southern Germany are long and complex, reflecting centuries of intricate and often contentious research. Among the most debated issues in pterosaur taxonomy is the relationship between Pterodactylus antiquus and Diopecephalus (Pterodactylus) kochi. Three distinct interpretations of their relationship have been proposed: (1) P. antiquus and D. kochi are conspecific and part of an ontogenetic sequence; (2) P. antiquus and D. kochi are sister taxa; (3) P. antiquus and D. kochi are distinct taxa and are not each other's closest relatives. Through an analysis of key anatomical features, including skull morphology, dentition and autopodial anatomy, we demonstrate that P. antiquus and D. kochi are distinct taxa that do not share close affinities. Phylogenetic analysis recovered D. kochi as the most basal member of Pterodactyloidea, retaining autopodial features comparable with those of non-pterodactyloids. Set within a temporal framework, this analysis challenges traditional assumptions regarding the pattern and timing of pterodactyloid evolution in the Jurassic, hinting at a longer and more complex history than previously realized.

Complete genome sequence of a novel iflavirus from wheat sawfly (Dolerus tritici).

Little is known about the insect viruses in wheat sawfly, Dolerus tritici, which is an important agricultural insect feeding on wheat leaves. Here, we used RNA sequencing to identify a novel single positive-strand RNA virus from the larvae of wheat sawfly collected in northern China and then determined its complete genome sequence by rapid amplification of cDNA ends. The complete genome is 9,594 nt in length, including a polyA tail at its 3' terminus, and it is predicted to encode a 326.3-kDa polyprotein. Phylogenetic analysis based on deduced amino acid sequences of the polyprotein revealed that this RNA virus clustered in a clade with deformed wing virus of the genus Iflavirus, family Iflaviridae. The full genome of this RNA virus shows 42.0-50.0% sequence identity with other iflaviruses. Comparisons of amino acid sequences showed that the coat protein of this RNA virus is most similar to that of slow bee paralysis virus, with 33.6% identity, suggesting that this virus is a new member in the genus Iflavirus. Thus, we have tentatively designated it as "Dolerus tritici iflavirus 1" (DtIV1). To our knowledge, this is the first report of an insect virus in wheat sawfly.

Coat-protein Gene Based Identification and Characterization of Yellow Mosaic Virus Infecting Blackgram in Northern Karnataka, India

Aims: Coat-protein (CP) based identification and characterization of yellow mosaic virus infecting blackgram. Place and Duration of Study: The study was carried out during Kharif 2023 at College of Agriculture, Vijayapur. Methodology: The whole genomic DNA was isolated from the leaf tissues of both healthy blackgram plants and plants infected with the yellow mosaic virus by using a modified CTAB method. Specific primers for YMV were tried to amplify coat protein region of blackgram YMV. Results: Sequence analysis revealed that the CP gene of the begomovirus under study shared 99.8 per cent similarity with MYMV Shivamogga isolate (OM106035.1) at the nucleotide level. When comparing the deduced amino acid sequences of individual proteins from YMV infecting blackgram at Vijayapur with those of other begomoviruses, the highest identity was found with the MYMV Shivamogga isolate (OM106035.1), showing 84.59 per cent similarity. A phylogenetic tree constructed based on the full-length coat protein gene sequence of MYMV, along with 37 other Geminivirus sequences, formed two major clusters in which MYMV-Vijayapur isolate appeared in Cluster I. Conclusion: The results of the current study, based on similarities in coat protein sequence at both the nucleotide and amino acid levels, as well as phylogenetic analysis, confirmed the prevalence of MYMV strain rather than MYMIV, HgYMV and DoYMV in blackgram in northern parts of Karnataka.

Simultaneous Down-Regulation of Dominant Cinnamoyl CoA Reductase and Cinnamyl Alcohol Dehydrogenase Dramatically Altered Lignin Content in Mulberry

Mulberry (Morus alba L.) is a significant economic tree species in China. The lignin component serves as a critical limiting factor that impacts both the forage quality and the conversion efficiency of mulberry biomass into biofuel. Cinnamoyl CoA reductase (CCR; EC 1.21.1.44) and cinnamyl alcohol dehydrogenase (CAD; EC 1.1.1.95) are the key enzymes that catalyze the final two reductive steps in the biosynthesis of monolignols. In this study, we conducted a comprehensive functional analysis to validate the predominant CCR genes involved in monolignol biosynthesis. In this study, we initially validated the predominant CCR genes implicated in monolignol biosynthesis through an extensive functional analysis. Phylogenetic analysis, tissue-specific expression profiling and enzymatic assays indicated that MaCCR1 is the authentic CCR involved in lignin biosynthesis. Furthermore, the expression level of MaCCR1 exhibited a significant positive correlation with lignin content, and the down-regulation of MaCCR1 via virus-induced gene silencing resulted in altered lignin content in mulberry. The down-regulation of MaCCR1 and MaCAD3/4, both individually and concurrently, exhibited markedly different effects on lignin content and mulberry growth. Specifically, the simultaneous down-regulation of MaCCR1 and MaCAD3/4 significantly altered lignin content in mulberry, resulting in dwarfism of the plants. Conversely, the down-regulation of MaCAD3/4 alone not only decreased lignin content but also led to an increase in biomass. These findings offer compelling evidence elucidating the roles of MaCCRs in mulberry and identify specific target genes, thereby providing a crucial foundation for the genetic modification of lignin biosynthesis.

Characterisation of Itersonilia spp. from Parsnip and Other Hosts

Parsnips (Pastinaca sativa) are a speciality UK crop with an economic value of at least 31M GBP annually. Currently, the major constraints to production are losses associated with root canker disease due to a range of fungal pathogens, among which Itersonilia pastinacae is of most concern to growers. With limited research conducted on this species, this work aimed to provide a much-needed characterisation of isolates from across the UK, continental Europe, and New Zealand. Previously, up to four separate Itersonilia species have been proposed based on the formation of chlamydospores and host specificity: I. pastinacae, I. perplexans, I. pyriformans, and I. pannonica. However, Itersonilia spp. isolates principally from parsnip, but also from a range of other hosts, which were found to infect both parsnip roots and leaves in pathogenicity tests. In growth rate assays, isolates were found to grow at temperatures of 0–25 °C and produce both chlamydospores and ballistospores across the same range of temperatures, although chlamydospore production was found to decrease as temperature increased. Following whole genome sequencing, specific primers were designed for the molecular characterisation of the isolates using six housekeeping genes and three highly variable functional genes. Phylogenetic analysis separated isolates into two and six clades, respectively, but the grouping was not associated with hosts or locations. Based on the results of this research, there was no evidence to support more than a single species of Itersonilia among the isolates studied.

Additions to Dictyosporiaceae: Neoxylochrysis typhicola comb. et gen. nov., Two New Species and Four New Host Records from Medicinal Plants in Southwestern China

Medicinal plants serve as vital resources for preventing and treating diseases, with their flowers, fruits, leaves, roots, or entire plants being utilized in the pharmaceutical industry or as direct therapeutic agents. During our investigation of microfungi associated with medicinal plants in Guizhou and Sichuan Provinces, China, several asexual and sexual fungal morphs were collected. Multi-locus phylogenetic analysis based on combined ITS, LSU, SSU and TEF1-α datasets revealed that these taxa are related to the family Dictyosporiaceae. Morphological characteristics, along with multi-locus phylogenetic analysis, supported the establishment of Dictyocheirospora alangii sp. nov. and Pseudocoleophoma rosae sp. nov., as well as the introduction of a novel genus Neoxylochrysis, which accommodates Neoxylochrysis typhicola comb. nov. (≡Pseudocoleophoma typhicola). In addition, four new host records are introduced for Aquadictyospora lignicola from Periploca forrestii, Dendryphiella eucalyptorum from Leonurus japonicus, Ophiopogon japonicus and Sambucus javanica, D. vinosa from Phytolacca americana, and Dictyocheirospora rotunda from Euonymus japonicus and Prinsepia utilis. Detailed descriptions, micrographs of the new taxa and a phylogenetic tree are provided.

Genetic Diversity and Epidemiology of Enteroviruses and Rhinoviruses in Children Hospitalized with Acute Respiratory Infections in Novosibirsk, Russia (2023–2024)

Rhinoviruses and respiratory enteroviruses remain among the leading causes of acute respiratory infections, particularly in children. Little is known about the genetic diversity of enteroviruses and rhinoviruses in pediatric patients with acute respiratory infections in Russia. We assessed the prevalence of human rhinoviruses/enteroviruses (HRV/EV) in 1992 children aged 0 to 17 years hospitalized with acute respiratory infections during the 2023–2024 epidemic season using PCR. The detection rate of HRV/EV was 11% (220/1992). We performed typing of 58 HRV and 28 EV viruses by partial sequencing of the VP1 gene. Rhinovirus A was the most common among HRV, followed by rhinovirus C; rhinovirus B was detected in only three cases. Enteroviruses were represented by all four species, with the EV-D68 genotype being the most frequently detected. Phylogenetic analysis of the VP1 fragment of EV-D68 showed that all our sequences belonged to the B3 subclade. We identified the first case of EV-C105 infection in Russia in a two-year-old girl hospitalized with pneumonia. Phylogenetically, the Novosibirsk strain EV-C105 was closely related to a strain discovered in France in 2018. This research helped to fill a critical gap in understanding the epidemiological landscape of HRV/EV in pediatric populations within Russia.