Phylogenetic Link Research Articles

Deep origin of the crossed‐lamellar microstructure in early Cambrian molluscs

AbstractAragonitic crossed‐lamellar (CL) is one of the most commonly formed and extensively studied molluscan shell microstructures, yet its origin and early evolution within the Mollusca remains poorly understood. Here, a primitive CL microstructure from one of the oldest gastropods, Pelagiella madianensis, and the problematic hyolith Cupitheca sp. of the Cambrian Series 2 Xinji Formation on the North China Platform, was investigated. In P. madianensis, detailed characterization has revealed a typical four‐ordered hierarchical organization of aragonitic crystallites, and a thick layer of organic membranes surrounding its first‐order lamellae. A transitional fibrous microstructure was observed between the outer CL and inner foliated aragonite structural layers. In Cupitheca sp., only the first and second‐order lamellae were visible due to preservation limitations, and the first‐order lamellae were extremely irregular in shape and size, which is consistent with modern representatives. This study demonstrates that the capability to construct highly‐mineralized intricate shells was acquired in early Cambrian stem‐group gastropods. The CL microstructure first emerged in the early Cambrian and as a basal synapomorphic trait in total‐group molluscs. Moreover, presence of the CL microstructure in problematic lophotrochozoans (i.e. hyoliths) is confirmed. This study contributes to a more complete picture of the evolutionary origin and architectural diversity of biomineralized mollusc shells during the Cambrian explosion, and strengthens the phylogenetic links between hyoliths and molluscs.

Microbial phylogenetic relatedness links to distinct successional patterns of bacterial and fungal communities.

The mechanisms underlying microbial community dynamics and co-occurrence patterns along ecological succession are crucial for understanding ecosystem recovery but remain largely unexplored. Here, we investigated community dynamics and taxa co-occurrence patterns in bacterial and fungal communities across a well-established chronosequence of post-mining lands spanning 54 years of recovery. Bacterial community structures became increasingly phylogenetically clustered with soil age at early successional stages and varied less at later successional stages. The dynamics of bacterial community phylogenetic structures were determined by the changes in the soil vegetation cover along succession. The dynamics of fungal community phylogenetic structures did not significantly correlate with soil age, soil properties or vegetation cover, and were mainly attributed to stochastic processes. Along succession, the common decrease in the bacterial co-occurrence complexity and in the average pairwise phylogenetic distances between co-occurring bacteria implied a decrease in potential bacterial cooperation. The increased complexity of fungal co-occurrence along succession was independent of phylogenetic relatedness between co-occurring fungi. This study provides new sights into ecological mechanisms underlying bacterial and fungal community succession.

Clinical guidelines in the general pathology of ophidians in captivity

The pathology of reptiles includes a series of peculiarities that refer both to the etiology and pathogenesis, and to the diagnosis and therapeutic conduct. Among reptiles, the ophidians have an increased degree of difficulty regarding pathology and medical intervention, for at least two reasons: significant anatomical-physiological differences (even compared to other families or orders with which they have close phylogenetic links) and difficult or even risky handling (especially for venomous species and large constrictors). From a taxonomic point of view, families and subfamilies include a multitude of species with extremely different behaviors or pathologies, sometimes even within the same genus. This is why ophidians are usually divided into two categories in which the main criterion is hunting and feeding behavior: venomous (with venom with main hemolytic composition or with venom with main neurotoxic composition) and constrictors (which hunt based mainly on the strength of the body muscles and sometimes on the ability to immobilize prey with the help of the buccal apparatus).

Genomic insights into the circulation of pandemic fluoroquinolone-resistant extra-intestinal pathogenic Escherichia coli ST1193 in Vietnam.

Extra-intestinal pathogenic Escherichia coli (ExPEC) ST1193, a globally emergent fluoroquinolone-resistant clone, has become an important cause of bloodstream infections (BSIs) associated with significant morbidity and mortality. Previous studies have reported the emergence of fluoroquinolone-resistant ExPEC ST1193 in Vietnam; however, limited data exist regarding the genetic structure, antimicrobial resistance (AMR) determinants and transmission dynamics of this pandemic clone. Here, we performed genomic and phylogenetic analyses of 46 ST1193 isolates obtained from BSIs and healthy individuals in Ho Chi Minh City, Vietnam, to investigate the pathogen population structure, molecular mechanisms of AMR and potential transmission patterns. We further examined the phylogenetic structure of ST1193 isolates in a global context. We found that the endemic E. coli ST1193 population was heterogeneous and highly dynamic, largely driven by multiple strain importations. Several well-supported phylogenetic clusters (C1–C6) were identified and associated with distinct bla CTX-M variants, including bla CTXM-27 (C1–C3, C5), bla CTXM-55 (C4) and bla CTXM-15 (C6). Most ST1193 isolates were multidrug-resistant and carried an extensive array of AMR genes. ST1193 isolates also exhibited the ability to acquire further resistance while circulating in Vietnam. There were phylogenetic links between ST1193 isolates from BSIs and healthy individuals, suggesting these organisms may both establish long-term colonization in the human intestinal tract and induce infections. Our study uncovers factors shaping the population structure and transmission dynamics of multidrug-resistant ST1193 in Vietnam, and highlights the urgent need for local One Health genomic surveillance to capture new emerging ExPEC clones and to better understand the origins and transmission patterns of these pathogens.

Dynamics of spreading of SARS-CoV-2 in a Belgian hemodialysis facility: The importance of the analysis of viral strains.

In‐center maintenance hemodialysis (HD) patients are at high risk of acquiring coronavirus disease 2019 (COVID‐19) by cross‐contamination inside the unit. The aim of this study was to assess retrospectively the dynamics of severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) transmission during the very first pandemic phase (March–July 2020) in a cohort of in‐center maintenance HD patients and in nurses the same HD facility, using a phylogenetic approach. All SARS‐CoV‐2 quantitative reverse‐transcription polymerase chain reaction positive patients and nurses from our HD unit‐respectively 10 out of 98, and 8 out of 58‐ and two other positive patients dialyzed in our self‐care unit were included. Whole‐genome viral sequencing and phylogenetic analysis supported the cluster investigation. Five positive patients were usually dialyzed in the same room and same shift before their COVID‐19 diagnosis was made. Viral sequencing performed on 4/5 patients' swabs showed no phylogenetic link between their viruses. The fifth patient (whose virus could not be sequenced) was dialyzed at the end of the dialysis room and was treated by a different nurse than the one in charge of the other patients. Three nurses shared the same virus detected in both self‐care patients (one of them had been transferred to our in‐center facility). The epidemiologically strongly suspected intra‐unit cluster could be ruled out by viral genome sequencing. The infection control policy did not allow inter‐patient contamination within the HD facility, in contrast to evidence of moderate dissemination within the nursing staff and in the satellite unit. Epidemiologic data without phylogenetic confirmation might mislead the interpretation of the dynamics of viral spreading within congregate settings.

Genetic diversity and phylogenetic relationship among the western and the Asian honey bees based on two mitochondrial gene segments (COI and ND5).

The Asian honey bee species i.e., Apis cerana (the eastern honey bee), A. dorsata (the giant honey bee), and the western or European honey bee (A. mellifera) collected from Pakistan were studied using partial sequences from two mitochondrial genes (i) the Cytochrome c oxidase I (COI) and (ii) the mitochondrially encoded NADH dehydrogenase 5 (ND5) and then compared with other honey bees sequences (already submitted from different countries around the globe) obtained after the national center for biotechnology information (NCBI). DNA sequences were analyzed employing molecular evolutionary genetics analysis and Kimura 2-parameter model, neighbor-joining method was applied to investigate phylogenetic relationships, and DNA sequence polymorphism was applied to measure the genetic diversity within the genus Apis. The phylogenetic analyses yielded consistent results. Based on COI gene fragment in two Asian and European honey bee species from Pakistan and from other countries showed considerable genetic diversity levels and deviation among the species. While in contrast the phylogenetic analyses based on ND5 gene fragment in Asian and European honey bee species from Pakistan and other countries showed comparatively higher genetic diversity indices and variations than the COI gene. So, in the genus Apis, the mitochondrial ND5 region has shown the possibility to answer the interactions among species. A further detailed work (by linking the analysis of other genomic and mitochondrial genes) is required for good quality solution to establish the concise genetic diversity and interaction among the Apis species. The objective of this study was to explore the extent of genetic differences and phylogenetic links among the three kinds of honey bee species from Pakistan and comparing them with other bee species around the globe.

Osteology of Unenlagia comahuensis (Theropoda, Paraves, Unenlagiidae) from the Late Cretaceous of Patagonia.

Unenlagia comahuensis was originally described as a phylogenetic link between nonavian dinosaurs and birds. Later it was interpreted by some authors as belonging to the deinonychosaurian clade Dromaeosauridae, and more recently as phylogenetically closer to birds than to dromaeosaurids. The only known specimen is represented by an incomplete skeleton, including vertebrae, incomplete scapular girdle, pelvis, and limbs, coming from Upper Cretaceous beds of Neuquén province, Patagonia, Argentina. The aim of the present paper is to include a detailed anatomical description of Unenlagia (currently only known by preliminary descriptions). Detailed analysis of Unenlagia anatomy resulted in the recognition of one possible additional Unenlagiidae synapomorphy (i.e., the presence of cup-like iliac articulation on ischium). We recognize derived anatomical traits that Unenlagia and kin share with birds, lending support to the interpretation that unenlagiids are stem-Avialae. Particularly, some appendicular features (e.g., scapula with subtriangular and relatively reduced acromion, poor outward projection of the glenoid and glenoidal lips on the scapula, lateral orientation of scapular glenoid, craniolaterally oriented deltopectoral crest of humerus) may be related to the acquisition of anatomical novelties that in birds are associated with flight. The present contribution on Unenlagia provides new data regarding the early evolution of avian features.

De novo assembly and comparative analysis of the complete mitochondrial genome sequence of the pistachio psyllid, Agonoscena pistaciae (Hemiptera: Aphalaridae)

The pistachio psyllid, Agonoscena pistaciae, is one of the most deleterious pests of pistachio trees. Deciphering genetic diversity and population structure is a prerequisite for developing efficacious suppression protocols and successful management strategies for any insect pest including A. pistaciae. Mitochondrial genome sequencing furnishes valuable information about insect evolution and diversity within and among populations. Here, we assembled the first complete mitochondrial genome of the pistachio psyllid high-throughput next generation sequencing. The circular mitochondrial genome of A. pistaciae was 15,346 bp in length encoding 37 genes, including 13 protein-coding genes (PCGs), 2 rRNA genes and 22 tRNA genes, with a long non-coding region (putative control regions). The A. pistaciae mitogenome was in same typical set and arrangement as that of the ancestral insect. The mitochondrial genome of A. pistaciae was compared to all 6 publically available mitogenomes of other Psylloidea species. The conservation of the gene arrangements and identical gene ordering among all psyllid species could suggest a structurally common ancestral mitogenome shared across Psylloidea. Phylogenetic analysis based on the 13 PCGs conformed the existing morphological based taxonomy and showed the clustering of the two Aphalaridae. Whole mitochondrial genome of A. pistaciae could be utilized in subsequent population genetic studies of the species and also add to a deeper understanding of the phylogenetic research links within the subfamily Psylloidea.

The emergence of azithromycin-resistant Salmonella Typhi in Nepal.

BackgroundTyphoid fever remains a significant cause of morbidity and mortality in Asia and Africa. The emergence of azithromycin resistance in South Asia is concerning, as azithromycin is one of the last effective oral drugs for treating typhoid.ObjectivesTo describe the molecular mechanism and phylogenetics of azithromycin-resistant (AzithR) Salmonella Typhi isolates from Patan Hospital, Kathmandu, Nepal.MethodsWhole-genome sequences of three AzithR S. Typhi isolates (MIC >256 mg/L) were analysed and compared with a global collection to investigate the azithromycin resistance mechanism and phylogenetic structure. Clinical information is reported for one of the three patients infected with AzithR S. Typhi.ResultsThe three AzithR isolates belonged to the H58 lineage and were genetically identical; they were distantly related to contemporaneous S. Typhi from Nepal and AzithR S. Typhi recently described in Bangladesh. Azithromycin resistance was mediated by a non-synonymous mutation in the acrB gene (R717L). The three AzithR isolates showed reduced susceptibility to ciprofloxacin (double mutation in the gyrA: S83F and D87G), and were susceptible to ampicillin, chloramphenicol and co-trimoxazole. Clinical information from one patient suggested non-response to azithromycin treatment.ConclusionsThis is the first molecular description of AzithR S. Typhi in Nepal. These organisms showed no phylogenetic link to AzithR S. Typhi in Bangladesh. Our data suggest that increasing use of azithromycin may pose a strong selective pressure driving the emergence of AzithR S. Typhi in South Asia. Further investigations are needed to evaluate treatment responses to azithromycin, predict evolutionary trajectories, and track the transmission of these organisms.

Molecular Characterization of Dengue Type 2 Outbreak in Pacific Islands Countries and Territories, 2017-2020.

Dengue virus (DENV) serotype-2 was detected in the South Pacific region in 2014 for the first time in 15 years. In 2016–2020, DENV-2 re-emerged in French Polynesia, Vanuatu, Wallis and Futuna, and New Caledonia, co-circulating with and later replacing DENV-1. In this context, epidemiological and molecular evolution data are paramount to decipher the diffusion route of this DENV-2 in the South Pacific region. In the current work, the E gene from 23 DENV-2 serum samples collected in Vanuatu, Fiji, Wallis and Futuna, and New Caledonia was sequenced. Both maximum likelihood and Bayesian phylogenetic analyses were performed. While all DENV-2 strains sequenced belong to the Cosmopolitan genotype, phylogenetic analysis suggests at least three different DENV-2 introductions in the South Pacific between 2017 and 2020. Strains retrieved in these Pacific Islands Countries and Territories (PICTs) in 2017–2020 are phylogenetically related, with strong phylogenetic links between strains retrieved from French PICTs. These phylogenetic data substantiate epidemiological data of the DENV-2 diffusion pattern between these countries.

Bat conservation and zoonotic disease risk: a research agenda to prevent misguided persecution in the aftermath of COVID‐19

COVID‐19 has spread around the globe, with massive impacts on global human health, national economies and conservation activities. In the timely editorial about conservation in the maelstrom of COVID‐19, Evans et al. (2020) urged the conservation community to collaborate with other relevant sectors of society in the search for solutions to the challenges posed by the current pandemic, as well as future zoonotic outbreaks. Considering the association of COVID‐19 with bats (Zhou et al., 2020), bat conservationists will undoubtedly be key actors in this dialogue, and thus an action plan on how best to adjust bat conservation to this new reality, alongside a transdisciplinary research agenda, are clear priorities.

Effects of the biocide triclosan on multiple life stages of ferns Onoclea sensibilis and Osmunda claytoniana

The chemical triclosan is an antibacterial agent that was used in many consumer products, such as soaps, lotions, toothpaste, cosmetics and other personal care products. Triclosan passes through the processes of wastewater treatment plants and ultimately contaminates rivers and other waterways. The soil is also contaminated using wastewater sludge or biosolids as fertilizer on agricultural and reclamation land projects. Triclosan has been shown to inhibit seed germination, growth rate, and development in wide variety of plants including many crop plants. Aquatic algae are particularly sensitive to low levels of triclosan. The purpose of this experiment is to investigate the effects of triclosan on the life cycle of the sensitive fern (Osmunda claytoniana), and the royal fern (Onoclea sensibilis). The use of ferns in this study is important because they share a phylogenetic link between algae and higher plants. Ferns also have a distinct heteromorphic life cycle that lends itself to examining the effects of environmental chemicals on different aspects of plant development. Spores were germinated, grown to gametophyte stage and then allowed to produce sporophytes in the presence of concentrations of triclosan measured in contaminated agricultural lands. Triclosan was found to inhibit spore germination, gametophyte growth and alter sporophyte development.

Molecular Epidemiology Analysis of SARS-CoV-2 Strains Circulating in Romania during the First Months of the Pandemic.

BACKGROUND: The spread of SARS-CoV-2 generated an unprecedented global public health crisis. Soon after Asia, Europe was seriously affected. Many countries, including Romania, adopted lockdown measures to limit the outbreak. AIM: We performed a molecular epidemiology analysis of SARS-CoV-2 viral strains circulating in Romania during the first two months of the epidemic in order to detect mutation profiles and phylogenetic relatedness. METHODS: Respiratory samples were directly used for shotgun sequencing. RESULTS: All Romanian sequences belonged to lineage B, with a different subtype distribution between northern and southern regions (subtype B.1.5 and B.1.1). Phylogenetic analysis suggested that the Romanian epidemic started with multiple introduction events from other European countries followed by local transmission. Phylogenetic links between northern Romania and Spain, Austria, Scotland and Russia were observed, as well as between southern Romania and Switzerland, Italy, France and Turkey. One viral strain presented a previously unreported mutation in the Nsp2 gene, namely K489E. Epidemiologically-defined clusters displayed specific mutations, suggesting molecular signatures for strains coming from areas that were isolated during the lockdown. CONCLUSIONS: Romanian epidemic was initiated by multiple introductions from European countries followed by local transmissions. Different subtype distribution between northern and southern Romania was observed after two months of the pandemic.

Genetic characterization of selected populations of European perch, Perca fluviatilis (Actinopterygii: Perciformes: Percidae), in the waters of north-western Poland with recommendations for fishing and stocking policies

Background. European perch, Perca fluviatilis Linnaeus, 1758, is a predatory freshwater fish present also in the coastal waters of the Baltic Sea. The available catch data indicate that the population profile of this species is disrupted, and the condition of the population is not stable. The aim of this study was to determine the diversity and genetic structure of and assess phylogenetic links and gene flow between selected perch populations originating from various types of reservoirs in northern Poland. Materials and methods. A total of 392 perch were collected from selected bodies of water in north-western Poland and the fin samples were preserved in 96% ethanol or stored for short periods at –20°C. Genomic DNA was isolated, while for further mitochondrial DNA analysis, a 1081-bp fragment of the control region was amplified. Amplification products were sequenced and subjected to restriction analysis (PCR-RFLP) in order to determine the genetic diversity of the control region of mtDNA. The obtained sequences were analyzed using bioinformatics tools, and phylogenetic trees were generated to determine the degree of diversity between individuals in selected perch stocks. Results. Seven haplotypes were identified. Ten polymorphic sites were defined, and the degree of genetic diversity between selected haplotypes was determined. Based on the distribution of perch haplotypes, stocks from Pomeranian Bay (haplotypes F, D), the Szczecin Lagoon (haplotypes D, F, H), and the more homogeneous stocks from Pomeranian Bay (haplotypes F, D) and the Kamieński Lagoon (D, F) can be distinguished. Analysis of phylogenetic relations allowed identifying stocks with the most conserved genome, similar to the standard perch genome, and stocks that have become more genetically distant, probably due to the diversity of the inhabited ecosystems or natural hybridization observed in this species. Conclusion. European perch inhabiting waters of north-western Poland is a species with high plasticity, without isolated stocks or populations that can be clearly distinguished on a genetic basis. It does, however, have a tendency for mitochondrial genomic modifications, which is likely due to the broad spectrum of ecosystems inhabited by the species. Due to the homogeneity of the perch populations from the Szczecin Lagoon, the Kamieński Lagoon, and Lake Myśliborskie, they should be used for the restoration of populations in water bodies in which their genetic structure is severely disrupted. For the same reason, the policy of perch catches should be modified. The authors suggest increasing the protected size to 20 cm and limiting the catches of the species as by-catch by modifying fishing tools, including the introduction of a seasonal prohibition of tools that might eliminate individuals of 15–16 cm in length from natural waters in their spawning period.

Measuring Language Distance of Isolated European Languages

Phylogenetics is a sub-field of historical linguistics whose aim is to classify a group of languages by considering their distances within a rooted tree that stands for their historical evolution. A few European languages do not belong to the Indo-European family or are otherwise isolated in the European rooted tree. Although it is not possible to establish phylogenetic links using basic strategies, it is possible to calculate the distances between these isolated languages and the rest using simple corpus-based techniques and natural language processing methods. The objective of this article is to select some isolated languages and measure the distance between them and from the other European languages, so as to shed light on the linguistic distances and proximities of these controversial languages without considering phylogenetic issues. The experiments were carried out with 40 European languages including six languages that are isolated in their corresponding families: Albanian, Armenian, Basque, Georgian, Greek, and Hungarian.

The trouble with trilobites: classification, phylogeny and the cryptogenesis problem

AbstractTrilobites are an iconic group of extinct arthropods that lived in Palaeozoic oceans forc. 270 Ma, before their demise at the end of the Permian Period. Despite their considerable diversity (> 22 000 species) and abundance, particularly in Cambrian and Ordovician rocks, as well as intensive study for well over 200 years, trilobite systematics remains in a state of flux. In this contribution, the complex history of trilobite classification over the last century is briefly reviewed, including the seminal scheme published by Henry Swinnerton in 1915. The cryptogenesis problem, which relates to the supposedly obscure phylogenetic links between major post-Cambrian trilobite clades and their Cambrian sister taxa, is also discussed. Previous studies have suggested that the cryptogenesis problem is largely a taxonomic artefact, but the Cambrian origins of some post-Cambrian groups, such as the orders Proetida and Odontopleurida, are still unclear. Future directions for research on trilobite systematics are outlined, from taxonomic studies involving comprehensive documentation and extensive illustration of morphology at the species level, through to broad-scale phylogenetic analyses that initiate or test hypotheses about relationships across the major groups. Other ongoing issues to be addressed include identifying the sister group of Trilobita, and determining whether certain taxa, such as the suborder Agnostina and Cambrian family Burlingiidae, represent trilobites.

Caspian Spined Loach Sabanejewia caspia: Well-Known but Practically Unexplored Species of the Cobitidae Family: Peculiarities of Morphology, Karyotype, Distribution, and Postulated Phylogenetic Links

An illustrated description of the features of the external morphology, coloration (taking into account variability), the structure of the cranium, and the karyotype of the Caspian spined loach Sabanejewia caspia are presented. As a result of a comparative analysis based on the study of collections for closely related species and literature data, a new species diagnosis of S. caspia was compiled, which allows one to avoid erroneous species identification. Confirmed data on species distribution are presented. The current state of the problem of assessing the phylogenetic relationships of S. caspia and other Sabanejewia species is discussed. Doubts about the correctness of attribution of the AU059338 and AU059339 Genbank haplotypes (widely used in phylogenetics of Cobitidae) to the species S. caucasica are substantiated.

Investigating the effect of endocranial volume on cranial shape in platyrrhines and the relevance of this relationship to interpretations of the fossil record.

Fossils have been linked to Alouatta based on shared cranial morphology and small brain size. However, the relationship between endocranial volume and cranial shape is unclear; it is possible that any platyrrhine with a small brain may exhibit "Alouatta-like" features due to being "de-encephalized." We test two hypotheses: (a) there are aspects of cranial shape related to encephalization common to all platyrrhines; (b) it is these cranial traits that unite the small-brained "Alouatta-like" fossils. Three-dimensional cranial shape and endocranial volume (ECV) were measured on 350+ extant platyrrhine crania, Cartelles, Paralouatta, and Antillothrix. Encephalization quotient (EQ) was calculated using regressions of ECV on cranial centroid size. Multivariate regressions were performed using the shape coordinates and EQ and shape changes associated with EQ were visualized. Cranial shape was predicted for a hypothetical primate with an EQ matching the fossils and this shape was compared to the Alouatta mean. There is a significant proportion of cranial shape variation explained by EQ in some taxa. The aspects of shape that are correlated with EQ are shared by several taxa and some have parallel regression vectors, but there is no overall pattern of shape change common to all platyrrhines. However, all taxa look more similar to Alouatta when their EQ is decreased, particularly Pithecia. Given that a decrease in encephalization can cause a more Alouatta-like cranial shape in many extant platyrrhines, it should not be automatically assumed that Alouatta-like cranial traits in a small-brained fossil are evidence of a phylogenetic link to the alouattin clade.

Coupling of a viral K+-channel with a glutamate-binding-domain highlights the modular design of ionotropic glutamate-receptors

Ionotropic glutamate receptors (iGluRs) mediate excitatory neuronal signaling in the mammalian CNS. These receptors are critically involved in diverse physiological processes; including learning and memory formation, as well as neuronal damage associated with neurological diseases. Based on partial sequence and structural similarities, these complex cation-permeable iGluRs are thought to descend from simple bacterial proteins emerging from a fusion of a substrate binding protein (SBP) and an inverted potassium (K+)-channel. Here, we fuse the pore module of the viral K+-channel KcvATCV-1 to the isolated glutamate-binding domain of the mammalian iGluR subunit GluA1 which is structural homolog to SBPs. The resulting chimera (GluATCV*) is functional and displays the ligand recognition characteristics of GluA1 and the K+-selectivity of KcvATCV-1. These results are consistent with a conserved activation mechanism between a glutamate-binding domain and the pore-module of a K+-channel and support the expected phylogenetic link between the two protein families.

New permanent teeth from Gran Dolina-TD6 (Sierra de Atapuerca). The bearing of Homo antecessor on the evolutionary scenario of Early and Middle Pleistocene Europe

Here we analyze the unpublished hominin dental remains recovered from the late Early Pleistocene Gran Dolina-TD6.2 level of the Sierra de Atapuerca (northern Spain), as well as provide a reassessment of the whole TD6.2 hominin dental sample. Comparative descriptions of the outer enamel surface (OES) and the enamel-dentine junction (EDJ) are provided. Overall, the data presented here support the taxonomic validity of Homo antecessor, since this species presents a unique mosaic of traits. Homo antecessor displays several primitive features for the genus Homo as well as some traits exclusively shared with Early and Middle Pleistocene Eurasian hominins. Some of these Eurasian traits were retained by the Middle Pleistocene hominins of Europe, and subsequently became the typical condition of the Neanderthal lineage. Although other skeletal parts present resemblances with Homo sapiens, TD6.2 teeth do not show any synapomorphy with modern humans. In addition, TD6.2 teeth can be well differentiated from those of Asian Homo erectus. The dental evidence is compatible with previous hypothesis about H. antecessor belonging to the basal population from which H. sapiens, Homo neanderthalensis, and Denisovans emerged. Future findings and additional research may help to elucidate the precise phylogenetic link among them.