Phylogenetic Age Research Articles

Population trends are more strongly linked to environmental change and species traits in birds than mammals.

Changes in land use and climate directly impact species populations. Species with divergent characteristics may respond differently to these changes. Therefore, understanding species' responses to environmental changes is fundamental for alleviating biodiversity loss. However, the relationships between land use changes, climate changes, species' intrinsic traits and population changes at different spatial scales have not been tested. In this study, we analysed the effects of land use and climate changes from different time periods and species traits on the population change rates of 2195 bird and mammal populations in 577 species recorded in the Living Planet Database at global, tropical and temperate scales. We hypothesized that both bird and mammal populations will decline owing to climate and land use changes, especially phylogenetically young and small-bodied species. We found that bird population trends were more closely related to environmental changes and phylogenetic age than those of mammals at global and temperate scales. Mammal population trends were not significantly correlated with land use or climate changes but were with longevity at global and temperate scales. Given the divergent responses of bird and mammal populations to these explanatory variables, different conservation strategies should be considered for these taxa and for different regions.

Challenges in estimating species' age from phylogenetic trees

AbstractAimSpecies age, the elapsed time since origination, can give insight into how species longevity might influence eco‐evolutionary dynamics, which has been hypothesized to influence extinction risk. Traditionally, species' ages have been estimated from fossil records. However, numerous studies have recently used the branch lengths of time‐calibrated phylogenies as estimates of the ages of extant species. This approach poses problems because phylogenetic trees only contain direct information about species identity at the tips and not along the branches. Here, we show that incomplete taxon sampling, extinction and different assumptions about speciation modes can significantly alter the relationship between true species age and phylogenetic branch lengths, leading to high error rates. We found that these biases can lead to erroneous interpretations of eco‐evolutionary patterns derived from comparing phylogenetic age and other traits, such as extinction risk.InnovationFor bifurcating speciation, the default assumption in most analyses of species age, we propose a probabilistic approach based on the properties of a birth–death process to improve the estimation of species ages. Our approach can reduce the error by one order of magnitude under cases of high extinction and a high percentage of unsampled extant species.Main conclusionOur results call for caution in interpreting the relationship between phylogenetic ages and eco‐evolutionary traits, as this can lead to biased and erroneous conclusions. We show that, under the assumption of bifurcating speciation, we can obtain unbiased approximations of species age by combining information from branch lengths with the expectations of a birth–death process.

Dispersal limitations and ecological adaptions shape phylogenetic diversity patterns of angiosperm woody plant communities along latitudinal and elevational gradients in East Asian islands

For centuries, ecologists have been captivated by the assembly of local communities from regional species pools, which gives rise to spatial diversity patterns. This study focused on hierarchical filtering process, which involves dispersal limitation and climatic constraint across regional to local scale, that underpins plant biodiversity patterns in East Asian islands, as one of the biodiversity hotspots with high endemicity. We used vegetation and species pool datasets of angiosperm woody plant communities collected from seven mountains across Japan to Taiwan to explore the relative contributions of local factors of individual plots, islands, latitude, elevation, and climatic variables related to the pattern of phylogenetic community assembly. Using linear regression and variation partitioning, we found that the island factor had the strongest filtering effect followed by latitude. Elevation and local factors (slope, aspect) accounted for a very small proportion of the variance in phylogenetic dispersion and community clade age between member species. Geographical factors involving islands, distance, and elevation had overriding filtering effects over climatic factors (minimum temperature of the coldest month, precipitation of the driest month) in shaping woody plant assembly patterns at the regional scale across East Asia islands. Tropical niche conservatism contributed to shaping woody plant communities in temperate region and high elevational regions on subtropical mountains as young and closely related species coexisted in those regions due to their adaptation to cold climates. This also explained the minor climate effects on species sorting in temperate mountains characterized by temperate-specific species pool which had already been filtered by cold climates. Inconsistent elevational phylogenetic diversity patterns in East Asia islands suggest a mountain-specific process that governs community assembly along elevational gradients, likely attributed to the location and climate of the mountain. These results suggest that historical factors (geohistorical isolation) related to islands and mountains contribute to in situ diversification that shaped plant diversity gradient from subtropical to temperate forests.

Eco-evolutionary processes shaping floral nectar sugar composition

Floral nectar sugar composition is assumed to reflect the nutritional demands and foraging behaviour of pollinators, but the relative contributions of evolutionary and abiotic factors to nectar sugar composition remain largely unknown across the angiosperms. We compiled a comprehensive dataset on nectar sugar composition for 414 insect-pollinated plant species across central Europe, along with phylogeny, paleoclimate, flower morphology, and pollinator dietary demands, to disentangle their relative effects. We found that phylogeny was strongly related with nectar sucrose content, which increased with the phylogenetic age of plant families, but even more strongly with historic global surface temperature. Nectar sugar composition was also defined by floral morphology, though it was not related to our functional measure of pollinator dietary demands. However, specialist pollinators of current plant-pollinator networks predominantly visited plant species with sucrose-rich nectar. Our results suggest that both physiological mechanisms related to plant water balance and evolutionary effects related to paleoclimatic changes have shaped floral nectar sugar composition during the radiation and specialisation of plants and pollinators. As a consequence, the high velocity of current climate change may affect plant-pollinator interaction networks due to a conflicting combination of immediate physiological responses and phylogenetic conservatism.

Most genetic roots of fungal and animal aging are hundreds of millions of years old according to phylostratigraphy analyses of aging networks.

Few studies have systematically analyzed how old aging is. Gaining a more accurate knowledge about the natural history of aging could however have several payoffs. This knowledge could unveil lineages with dated genetic hardware, possibly maladapted to current environmental challenges, and also uncover "phylogenetic modules of aging," i.e., naturally evolved pathways associated with aging or longevity from a single ancestry, with translational interest for anti-aging therapies. Here, we approximated the natural history of the genetic hardware of aging for five model fungal and animal species. We propose a lower-bound estimate of the phylogenetic age of origination for their protein-encoding gene families and protein-protein interactions. Most aging-associated gene families are hundreds of million years old, older than the other gene families from these genomes. Moreover, we observed a form of punctuated evolution of the aging hardware in all species, as aging-associated families born at specific phylogenetic times accumulate preferentially in genomes. Most protein-protein interactions between aging genes are also old, and old aging-associated proteins showed a reduced potential to contribute to novel interactions associated with aging, suggesting that aging networks are at risk of losing in evolvability over long evolutionary periods. Finally, due to reshuffling events, aging networks presented a very limited phylogenetic structure that challenges the detection of "maladaptive" or "adaptative" phylogenetic modules of aging in present-day genomes.

Y chromosome haplogroups are associated with birth size in Japanese men.

The Y chromosome is classified into haplogroups (A-T) based on a combination of several DNA polymorphisms. Japanese men are mainly classified into haplogroups C, D, and O, which have been further subdivided. The distribution of Y-chromosome haplogroups varies by ethnicity. The phylogenetic age, origin, and migration also differ. I hypothesized that Y chromosome haplogroups may be associated with height and/or weight at birth. An association analysis of height and weight at birth with Y chromosome haplogroups was performed in 288 Japanese men. Men belonging to haplogroup O1b2 were significantly associated with short stature at birth (beta = －1.88, standard error (SE) = 0.55, P = 0.00076), and those belonging to D1a2a-12f2b were significantly associated with increased birth weight (beta = 174, SE = 64, P = 0.0069). Y chromosome haplogroups are associated with physical birth characteristics in modern Japanese men. J. Med. Invest. 71 : 129-133, February, 2024.

The Cretaceous–Paleogene transition in spiny-rayed fishes: surveying “Patterson’s Gap” in the acanthomorph skeletal record

In contrast to the rich collections of articulated spiny-rayed fishes from early Late Cretaceous and Eocene Lagerstätten, similar skeletal remains are sparse in Maastrichtian–Paleocene strata. Here we coin this poorly understood span “Patterson’s Gap” and review known articulated skeletons from it, summarizing available information on their phylogenetic affinities, age, and environmental context. Roughly fifty percent of taxa in both the Maastrichtian and Paleocene come from Europe and North America, with percomorphs representing around 60% of the skeletal acanthomorph taxa in each interval. This is higher than the only pre-Maastrichtian assemblage with a reasonable sample of percomorphs, but lower than most Eocene and younger sites. Fossils from Patterson’s Gap show a steady accumulation of the principal lineages of spiny-rayed fishes. Material from Paleocene or older strata provides evidence for most of the roughly 20 major acanthomorph divisions recovered by molecular studies. Many fossils from Patterson’s Gap remain undescribed and unnamed, and almost none have been included within formal phylogenetic analyses. Revision of existing material, combined with additional fieldwork, should be a priority for future efforts seeking to clarify this murky but significant interval in the evolutionary history of a major vertebrate radiation.

Disentangling the historical routes to community assembly in the global epicentre of biodiversity

AbstractAimThe exceptional turnover in biota with elevation and number of species coexisting at any elevation makes tropical mountains hotspots of biodiversity. However, understanding the historical processes through which species arising in geographical isolation (i.e. allopatry) assemble along the same mountain slope (i.e. sympatry) remains a major challenge. Multiple models have been proposed including (1) the sorting of already elevationally divergent species, (2) the displacement of elevation upon secondary contact, potentially followed by convergence, or (3) elevational conservatism, in which ancestral elevational ranges are retained. However, the relative contribution of these processes to generating patterns of elevational overlap and turnover is unknown.LocationTropical mountains of Central‐ and South‐America.Time PeriodThe last 12 myr.Major Taxa StudiedBirds.MethodsWe collate a dataset of 165 avian sister pairs containing estimates of phylogenetic age, geographical and regional elevational range overlap. We develop a framework based on continuous‐time Markov models to infer the relative frequency of different historical pathways in explaining present‐day overlap and turnover of sympatric species along elevational gradients.ResultsWe show that turnover of closely related bird species across elevation can predominantly be explained by displacement of elevation ranges upon contact (81%) rather than elevational divergence in allopatry (19%). In contrast, overlap along elevation gradients is primarily (88%) explained by conservatism of elevational ranges rather than displacement followed by elevational expansion (12%).Main ConclusionsBird communities across elevation gradients are assembled through a mix of processes, including the sorting, displacement and conservatism of species elevation ranges. The dominant role of conservatism in explaining co‐occurrence of species on mountain slopes rejects more complex scenarios requiring displacement followed by expansion. The ability of closely related species to coexist without elevational divergence provides a direct and faster pathway to sympatry and helps explain the exceptional species richness of tropical mountains.

СОДЕРЖАНИЕ НЕЙРОГЛОБИНА В СТРУКТУРАХ ГОЛОВНОГО МОЗГА КРЫСЫ ПРИ СУБТОТАЛЬНОЙ ИШЕМИИ

Neuroglobin (Ngb) is a member of the globin family. Like other globin proteins, it is involved in the maintenance of oxygen homeostasis. Ngb distribution in the normal brain is well known, but its response to pathological injury, such as cerebral ischemia, has not yet been adequately elucidated. One primary reason for this is that ischemic lesions in cerebral tissues have mostly been studied in transgenic organisms. In addition, the available data on Ngb content are limited to a small number of brain structures. This article examines the patterns of changes in Ngb immunoreactivity in neurons from different parts of the rat brain after subtotal cerebral ischemia of varying duration. An immunohistochemical study of Ngb content in 25 brain structures of white male Wistar rats exposed to 30-min and 3-h subtotal cerebral ischemia was performed. A decrease in Ngb content in all structures (especially 3 h after the ischemia onset and in the phylogenetically older parts), temporal mediation, and dependence on the phylogenetic age were revealed. The obtained results further decipher the correlation between the changes in Ngb content and the degree of cerebral ischemic damage, which is necessary to clarify the functions of the studied protein.

General principles for assignments of communities from eDNA: Open versus closed taxonomic databases

AbstractMetabarcoding of environmental DNA (eDNA) is a powerful tool for describing biodiversity, such as finding keystone species or detecting invasive species in environmental samples. Continuous improvements in the method and the advances in sequencing platforms over the last decade have meant this approach is now widely used in biodiversity sciences and biomonitoring. For its general use, the method hinges on a correct identification of taxa. However, past studies have shown how this crucially depends on important decisions during sampling, sample processing, and subsequent handling of sequencing data. With no clear consensus as to the best practice, particularly the latter has led to varied bioinformatic approaches and recommendations for data preparation and taxonomic identification. In this study, using a large freshwater fish eDNA sequence dataset, we compared the frequently used zero‐radius Operational Taxonomic Unit (zOTU) approach of our raw reads and assigned it taxonomically (i) in combination with publicly available reference sequences (open databases) or (ii) with an OSU (Operational Sequence Units) database approach, using a curated database of reference sequences generated from specimen barcoding (closed database). We show both approaches gave comparable results for common species. However, the commonalities between the approaches decreased with read abundance and were thus less reliable and not comparable for rare species. The success of the zOTU approach depended on the suitability, rather than the size, of a reference database. Contrastingly, the OSU approach used reliable DNA sequences and thus often enabled species‐level identifications, yet this resolution decreased with the recent phylogenetic age of the species. We show the need to include target group coverage, outgroups and full taxonomic annotation in reference databases to avoid misleading annotations that can occur when using short amplicon sizes as commonly used in eDNA metabarcoding studies. Finally, we make general suggestions to improve the construction and use of reference databases for metabarcoding studies in the future.

Structure, function and genoarchitectonics of the Central nucleus of the Brain’s Amygdala

The review presents the latest literature describing the Central nucleus of the Amygdala complex of the brain (CE), which is an important link in the Central autonomic nervous network. It appears in the early stages of the evolution of the telencephalon. This determines its solid phylogenetic age and explains the heteromorphy, which is manifested by the presence of a number of subnucleus: medial, intermediate, lateral and latero-capsular. The article provides information about the features of cytoarchitectonics, neural organization of subnucleus and neuropeptides. Among the latter, special attention is paid to vasopressin and oxytocin in connection with the identified new way of innervation of the amygdala complex, which has at least two origins: 1. arising from a small population of neurons localized in the intra-amygdalar portion of the bed nucleus of the stria terminalis, and 2.originating from hypothalamic neurosecretory nuclei. Afferent and efferent connections of CE are characterized. A large number of studies define the medial subnucleus as the center of integration of incoming information to the CE and the main channel for its exit from CE. At the same time, the main point where efferent connections of CE follow is the centers of the brain stem that control cardiovascular, respiratory, metabolic and motor functions. Information is provided about the main functions, including the regulation of various forms of social behavior, eating behavior, and involvement in functional reinforcement systems. The results of genetic studies indicate that CE is a derivative of the striatal division of the lateral ganglionic eminence, in the formation of which the expression of the Dlx5 and Lmo4 genes.

Macroevolutionary trends and diversification dynamics in Atripliceae (Amaranthaceae s.l., Chenopodioideae): a first approach.

Atripliceae evolved and diversified by dispersals and radiations across continents in both hemispheres, colonizing similar semi-arid, saline-alkaline environments throughout the world. Meanwhile, its species developed different life forms, photosynthetic pathways, mono- or dioecy, and different morphological features in flowers, fruiting bracteoles and seeds. In this study, we introduce a first approach to the macroevolutionary patterns and diversification dynamics of the Atripliceae to understand how time, traits, speciation, extinction and new habitats influenced the evolution of this lineage. We performed molecular phylogenetic analyses and clade age estimation of Atripliceae to apply time-, trait- and geographic-dependent diversification analyses and ancestral state reconstructions to explore diversification patterns within the tribe. Opposite diversification dynamics within the two major clades of Atripliceae, the Archiatriplex and Atriplex clades, could explain the unbalanced species richness between them; we found low mean speciation rates in the Archiatriplex clade and one shift to higher speciation rates placed in the branch of the Atriplex core. This acceleration in diversification seems to have started before the transition between C3 and C4 metabolism and before the arrival of Atriplex in the Americas, and matches the Mid-Miocene Climatic Optimum. Besides, the American species of Atriplex exhibit slightly higher net diversification rates than the Australian and Eurasian ones. While time seems not to be associated with diversification, traits such as life form, photosynthetic pathway and plant sex may have played roles as diversification drivers. Traits more than time played a key role in Atripliceae diversification, and we could speculate that climate changes could have triggered speciation. The extreme arid or saline environments where Atripliceae species prevail may explain its particular evolutionary trends and trait correlations compared with other angiosperms and highlight the importance of conservation efforts needed to preserve them as genetic resources to deal with climatic changes.

Adapting to extremes: Reconstructing evolution in response to changing climate over time and space in the diverse Australian plant genus Acacia

AbstractAimMacroevolutionary analysis is increasingly being used to study biodiversity responses to climate change, for example by using phylogenetic node ages to infer periods of diversification, or phylogenetic reconstruction of traits to infer adaptation to particular stresses. Here we apply a recently developed macroevolutionary method to investigate the responses of a diverse plant genus, Acacia, to increasing aridity and salinity in Australia from the Miocene to the present. We ask whether increase in tolerance of aridity and salinity coincided with periods of aridification, and if it allowed the radiation of Acacia into a wide range of niches.TaxonAcacia.LocationAustralia.MethodsWe applied the Niche Evolution Model (NEMo), which combines environmental (or ecological) niche modelling (ENM) with phylogenetic comparative methods (PCMs) in a single statistical framework, to a large database of Acacia presence‐only records and presence–absence survey sites in order to infer current environmental tolerances of Australia Acacia species and reconstruct the evolution of environmental tolerance to increasing aridity and salinity.ResultsWe find that patterns in evolution of Acacia, over time and across different habitat types, are consistent with the aridification history of Australia and suggests substantial ability to adapt to high aridity and salinity.Main conclusionsOur results suggest that many Acacia lineages have been able to exploit new environments created during the aridification of Australia through evolution of environmental tolerance, resulting in their current dominance of many habitats across the continent. This study demonstrates that phylogenetic studies of the evolution of responses to changing environment can move beyond the application of simple trait‐based models, allowing the underlying processes of speciation, adaptation and dispersal to be explicitly modelled in a macroecological and macroevolutionary context.

A conspectus of Tephroseris (Asteraceae: Senecioneae) in Europe outside Russia and notes on the decline of the genus

Tephroseris is generally considered a difficult genus. Based on the examination of extensive herbarium material and considering the existing literature, we recognize seven species in Europe outside Russia. These are T. palustris, T. integrifolia with subsp. integrifolia, subsp. aurantiaca, subsp. capitata, subsp. maritima, subsp. serpentini and subsp. “tundricola”, T. balbisiana, T. crispa, T. helenitis, T. longifolia and T. papposa. Phylogenetic analysis of ITS and ETS sequences showed that these species fall into three lineages. These are: (1) T. palustris, clearly related to Arctic species of the genus; (2) T. integrifolia; and (3) the remaining species. Molecular dating of the T. integrifolia lineage resulted in a crown group age of 1.76 (0.85–2.87) million years. Possible reasons for taxonomic difficulties in the genus in Europe outside Russia may include its young phylogenetic age and extensive migration and genetic admixture in the Quaternary. The decline of the genus in Europe outside Russia is documented and discussed. We consider it possible that its decline is related to rising global temperatures. Citation: Kadereit J. W., Laux P. & Dillenberger M. S. 2021: A conspectus of Tephroseris (Asteraceae: Senecioneae) in Europe outside Russia and notes on the decline of the genus. – Willdenowia 51: 271–317. Version of record first published online on 3 September 2021 ahead of inclusion in August 2021 issue.

Neuroglobin in rat brain neurons

Neuroglobin is a metalloprotein expressed predominantly in a nervous system and involved in the functioning of cells in normal and pathological conditions. Despite numerous studies, information on its regional distribution is ambiguous. The purpose of the study is to identify patterns and features of the regional distribution of neuroglobin in neurons of all structures of the rat brain with a quantitative assessment of its content at the cellular level. Material and methods. Five outbred male rats kept under standard conditions were used in the study. Frontal serial sections were made after decapitation, fixation, dehydration and paraffin-embedding. One section of the series was stained according to the Nissl method for identification of structures according to the stereotaxic atlas, and the second section was immunohistochemically stained for neuroglobin. 100 brain structures were studied cytophotometrically, neuroglobin immunoreactivity was expressed in units of optical density ×103 (conventional units). Results and discussion. Four levels of neuroglobin content were identified – low, moderate, high and very high. Structures without neuroglobin were not found. Among the studied brain structures the amount of neuroglobin contents varies from 140–160 to 459–479 relative units. The low and moderate neuroglobin amount was revealed in supreme number of structures. Among the parts of the brain there is an increase in the content of neuroglobin in the direction telencephalon – diencephalon – midbrain – pons and medulla oblongata. The widest range of values is found in the telencephalon, pons and medulla oblongata. In the cerebellum the largest values are demonstrated by the interposed nucleus and the Purkinje cells of the pyramid. Conclusion. Neuroglobin has been found in neurons in all parts of the rat brain and spinal cord. The amount of neuroglobin depends on phylogenetic age: in the brain its content increases in the anteroposterior direction, and structures of paleocortex contain more neuroglobin than the structures of the neocortex. In the cerebellum a greater amount of neuroglobin is found in structures of the paleocerebellum.

Shared paternal ancestry of Han, Tai-Kadai-speaking, and Austronesian-speaking populations as revealed by the high resolution phylogeny of O1a-M119 and distribution of its sub-lineages within China.

The aim of this research was to explore the origin, diversification, and demographic history of O1a-M119 over the past 10,000 years, as well as its role during the formation of East Asian and Southeast Asian populations, particularly the Han, Tai-Kadai-speaking, and Austronesian-speaking populations. Y-chromosome sequences (n = 141) of the O1a-M119 lineage, including 17 newly generated in this study, were used to reconstruct a revised phylogenetic tree with age estimates, and identify sub-lineages. The geographic distribution of 12 O1a-M119 sub-lineages was summarized, based on 7325 O1a-M119 individuals identified among 60,009 Chinese males. A revised phylogenetic tree, age estimation, and distribution maps indicated continuous expansion of haplogroup O1a-M119 over the past 10,000 years, and differences in demographic history across geographic regions. We propose several sub-lineages of O1a-M119 as founding paternal lineages of Han, Tai-Kadai-speaking, and Austronesian-speaking populations. The sharing of several young O1a-M119 sub-lineages with expansion times less than 6000 years between these three population groups supports a partial common ancestry for them in the Neolithic Age; however, the paternal genetic divergence pattern is much more complex than previous hypotheses based on ethnology, archeology, and linguistics. Our analyses contribute to a better understanding of the demographic history of O1a-M119 sub-lineages over the past 10,000 years during the emergence of Han, Austronesians, Tai-Kadai-speaking populations. The data described in this study will assist in understanding of the history of Han, Tai-Kadai-speaking, and Austronesian-speaking populations from ethnology, archeology, and linguistic perspectives in the future.

ИММУНОГИСТОХИМИЧЕСКОЕ ИССЛЕДОВАНИЕ КАЛЬБИНДИНАВ РАЗВИВАЮЩЕМСЯ МОЗЖЕЧКЕ КРЫСЫ

Background. Calbindin is a calcium-binding protein that supports calcium homeostasis for the normal functioning of neurons. Purpose. To study the distribution of immunoreactivity of calbindin-D28K in the structures of the developing cerebellum of the rat.Material and methods. The study was performed on 16 outbred white rats of different age groups: 2-, 7-, 15-days (early postnatal period), 45-days (puberty period). The cerebellum samples were taken and fixed in zinc-ethanol-formaldehyde for immunohistochemistry. Calbindin-D28K immunoreactivity was determined on paraffin sections using primary polyclonal rabbit antibodies.Results. In the cerebellar cortex, calbindin immunoreactivity was detected on the 2nd day after development of Purkinje cells (PC) in their perikaryons, and by the 15th day in their dendrites and it did not change by the 45th day. In all terms of the study in PC, it was detected not only in the cytoplasm, but also in their nucleus. In the granular layer, calbindin immunoreactivity decreased in rats in postnatal ontogenesis, however, in adult rats, some neurons were moderately immunopositive. Among them, from the 15th day after birth, the calbindin-immunoreactive afferent nerve fibers running in the white matter were detected. There were no significant differences in the distribution of calbindin between the lobes of the cerebellum of different phylogenetic age. Conclusions. Considering that the expression of сalbindin-D28k is detected throughout the entire period of development of Purkinje cells, as well as its physiological role in maintaining the function and homeostasis of calcium in them, it can be concluded that сalbindin-D28k is a valuable marker for the morphofunctional characteristics of PC in the developing and adult cerebellum of rats in normal and pathological conditions.

Network and Evolutionary Analysis of Human Epigenetic Regulators to Unravel Disease Associations.

We carried out a system-level analysis of epigenetic regulators (ERs) and detailed the protein–protein interaction (PPI) network characteristics of disease-associated ERs. We found that most diseases associated with ERs can be clustered into two large groups, cancer diseases and developmental diseases. ER genes formed a highly interconnected PPI subnetwork, indicating a high tendency to interact and agglomerate with one another. We used the disease module detection (DIAMOnD) algorithm to expand the PPI subnetworks into a comprehensive cancer disease ER network (CDEN) and developmental disease ER network (DDEN). Using the transcriptome from early mouse developmental stages, we identified the gene co-expression modules significantly enriched for the CDEN and DDEN gene sets, which indicated the stage-dependent roles of ER-related disease genes during early embryonic development. The evolutionary rate and phylogenetic age distribution analysis indicated that the evolution of CDEN and DDEN genes was mostly constrained, and these genes exhibited older evolutionary age. Our analysis of human polymorphism data revealed that genes belonging to DDEN and Seed-DDEN were more likely to show signs of recent positive selection in human history. This finding suggests a potential association between positive selection of ERs and risk of developmental diseases through the mechanism of antagonistic pleiotropy.

Fractal dimension of phylogenetically different parts of the human cerebellum (magnetic resonance imaging study)

In recent years, fractal analysis has been increasingly used as a morphometric method, which allows to assess the complexity of the organization of quasi-fractal biological structures, including the cerebellum. The aim of the study was to determine the value of fractal dimension of phylogenetically different parts of the cerebellum by studying magnetic resonance imaging of the brain using the method of pixel dilation and to identify gender and age characteristics of individual variability of fractal dimension of the cerebellum and its external linear contour. The study was performed on the magnetic resonance images of the brain of 120 relatively healthy patients in age 18-86 years (65 women, 55 men). T2 weighted tomographic images were investigated. Fractal analysis was performed using the method of pixel dilation in the author’s modification. Fractal dimension (FD) values were determined for cerebellar tomographic images segmented with brightness values of 100 (FD100), 90 (FD90) and in the range of 100-90 (FD100-90 or fractal dimension of the outer cerebellar contour) in its upper and lower lobes, which include phylogenetically different zones. The obtained data were processed using generally accepted statistical methods. The average value of FD100 of the upper lobe of the cerebellum was 1.816±0.005, the lower lobe – 1.855±0.005. The average value of FD90 of the upper lobe of the cerebellum was 1.734±009, the lower lobe – 1.768±0.009. The average value of FD100-90 of the upper lobe of the cerebellum was 1.370±0.009, the lower lobe – 1.431±0.008. All three values of the fractal dimension of the lower lobe, which lobules have a lower phylogenetic age, are statistically significantly higher than the corresponding values of the fractal dimension of the upper lobe, have a more pronounced correlation with age than in the upper lobe. The developed research algorithm can be used to assess the condition of the cerebellum as an additional morphometric method during magnetic resonance imaging study of the brain.

Skull remains of the dinosaur Saturnalia tupiniquim (Late Triassic, Brazil): With comments on the early evolution of sauropodomorph feeding behaviour.

Saturnalia tupiniquim is a sauropodomorph dinosaur from the Late Triassic (Carnian–c. 233 Ma) Santa Maria Formation of Brazil. Due to its phylogenetic position and age, it is important for studies focusing on the early evolution of both dinosaurs and sauropodomorphs. The osteology of Saturnalia has been described in a series of papers, but its cranial anatomy remains mostly unknown. Here, we describe the skull bones of one of its paratypes (only in the type-series to possess such remains) based on CT Scan data. The newly described elements allowed estimating the cranial length of Saturnalia and provide additional support for the presence of a reduced skull (i.e. two thirds of the femoral length) in this taxon, as typical of later sauropodomorphs. Skull reduction in Saturnalia could be related to an increased efficiency for predatory feeding behaviour, allowing fast movements of the head in order to secure small and elusive prey, a hypothesis also supported by data from its tooth and brain morphology. A principal co-ordinates analysis of the sauropodomorph jaw feeding apparatus shows marked shifts in morphospace occupation in different stages of the first 30 million years of their evolutionary history. One of these shifts is observed between non-plateosaurian and plateosaurian sauropodomorphs, suggesting that, despite also having an omnivorous diet, the feeding behaviour of some early Carnian sauropodomorphs, such as Saturnalia, was markedly different from that of later Triassic taxa. A second shift, between Late Triassic and Early Jurassic taxa, is congruent with a floral turnover hypothesis across the Triassic-Jurassic boundary.