According to data of dendrochronological investigations of larch trees that had grown on the Patom crater (Irkutsk oblast, Bodaibinskii district) and near its base, the initial period of the formation of the crater can be dated back to the late 15th‒early 16th centuries. In 1841‒1842, the trees under investigation recorded in annual rings a catastrophic event which caused a disturbance to their root systems, damage to tree stems, and the formation of compression wood. It is obvious that the event is associated with the time of formation of the late stage ring swell on which sparse larch trees are 93‒101 years of age, and on the central mound emerging upon completion of the formation of the Patom crater the age of the oldest tree is 7 years. Thus dendrochronological investigations confirm a long-lasting and multievent formation of the Patoma crater. In some periods, the deposition cone was evolving with a different intensity, sometime showing an explosive character. X-ray fluorescent analysis revealed a double Sr enrichment of larch wood at the time of significant activity of crater formation (1852‒1859) when plutonic fluids from the igneous source were able to enter the upper horizons of the Earth’s crust at the time of magma intrusion into water-containing rocks. The fluids were enriched with CO2 and transported significant amounts of Sr, as a result of which the 87Sr/86Sr ratios in carbonate and terrigenous rocks assumed higher values in sandstone and schists on the early stage ring swell of the Patoma crater. The findings, coupled with geological data, suggest that the Patom crater emerged as a result of a phreatic explosion that occurred either at the time of magma intrusion into water-containing rocks or as a consequence of the fault and decompression of heated water-containing rocks.