Phytoplankton Photosynthesis Research Articles

Light attenuation parameterization in a highly turbid mega estuary and its impact on the coastal planktonic ecosystem

Light is essential for phytoplankton photosynthesis and many other biogeochemical processes in the aquatic system. However, light regimes vary greatly in the estuaries and coasts due to the optical complexity of the Case-2 waters. In this study, observed vertical profiles of photosynthetically active radiation (PAR; 400-700 nm) in a highly turbid mega estuary, the Changjiang (Yangtze River) Estuary, are used to quantify the effects of sedimentary and biogeochemical components on PAR attenuation in the water column and associated ecological impacts. The in-situ data suggest suspended sediment plays the most crucial role in light diffuse attenuation coefficient (Kd) distribution, followed by salinity (i.e., an index for colored dissolved organic matter) and phytoplankton chlorophyll-a. A new parameterization of Kd, based on suspended sediment, chlorophyll-a concentration, and salinity, is fitted using multiple linear regression. The previous and new Kd parameterizations are further applied to a coupled hydrodynamics-sediment-ecosystem model to simulate spring phytoplankton blooms. Comparative model runs reveal that the new Kd parameterization resulted in a better representation of the spring bloom patterns in magnitude, horizontal distribution, and vertical thickness of the high chlorophyll-a band offshore the turbidity maximum zone during the spring bloom. In summary, accurate representations of underwater light fields in the optically complex Case-2 water are critical in understanding biophysical processes that control planktonic ecosystem dynamics in the estuaries and coastal seas.

Large-scale oyster farming accelerates the removal of dissolved inorganic carbon from seawater in Sanggou Bay

While the direct impact of oyster calcification and respiration on the seawater inorganic carbon system is well-acknowledged, their indirect effect through filter feeding activities remains unclear. Here we studied the impact of large-scale oyster farming on the removal of dissolved inorganic carbon (DIC) from seawater. Field investigations showed that the DIC level in the oyster farming area in Sanggou Bay, China were significantly lower than that in the non-farming area. In-lab incubation showed that regardless of whether incubated in high or low-transparent environments, the DIC removal rate of seawater from the oyster farming area was significantly higher than that of the non-farming area. These results indicate that cultivated oyster facilitates the removal of seawater DIC in the farming area. To reveal the indirect effect of filter feeding activities on DIC removal, we used 6-m3 ponds to simulate the oyster-farming environment. Results showed that the average DIC level of the oyster-cultivating groups was 105.83 μmol/kg lower than that of the control groups (without of oyster) after a six-day cultivation. Surprisingly, the average concentration of Chl-a in oyster-cultivating groups was significantly higher than that of the control group at the end of the experiment. Similarly, DIC level declined faster while Chl-a concentration increased faster in seawater that previously experienced 12～20 hours of oyster cultivation than that in the control seawater. It was noticed that the transparence of seawater within 6-m3 ponds increased significantly just after hours of oyster cultivation. This enhanced transparency created a favorable light environment that supported phytoplankton photosynthesis and simultaneously accelerated the DIC removal rate. Overall, oysters not only remove the inorganic carbon in the seawater through calcification but also create a suitable environment for phytoplankton photosynthesis through their filtering activity, and subsequently accelerating the removal of inorganic carbon in the seawater of the oyster farming area.

Mathematical model of oxygen minimum zones in the vertical distribution of oxygen in the ocean.

Processes determining the amount and spatial distribution of dissolved oxygen in the ocean have been a focus of intense research over the last two decades. Anomalies known as Oxygen Minimum Zones (OMZs) have been attracting growing attention, in particular because their growth is believed to be a result of the global environmental change. Comprehensive understanding of factors contributing to and/or controlling the emergence and evolution of OMZs is still lacking though. OMZs are usually thought to result from an interplay between the oxygen transport through the water column from the ocean surface and variable oxygen solubility at different water temperature. In this paper, we suggest a different, novel mechanism of the OMZ formation relating it to the oxygen production in phytoplankton photosynthesis in a stratified ocean. We consider a simple, conceptual model of the coupled phytoplankton-oxygen dynamics and show that the model predictions are in qualitative agreement with some relevant field observations.

BIFURCATION ANALYSIS AND CHAOS CONTROL OF THE DISSOLVED OXYGEN-PHYTOPLANKTON DYNAMICAL MODEL

The production of oxygen through phytoplankton photosynthesis is a crucial phenomenon in the dynamics of marine ecosystems. A generic oxygen-phytoplankton interaction model is considered to comprehend its underlying mechanism. This paper investigates the discrete-time dynamics of oxygen and phytoplankton in aquatic ecosystems, incorporating factors that cause phytoplankton mortality due to external influences. We explore the conditions for the local stability of steady states concerning the oxygen content in dissolved water and phytoplankton density. The analysis reveals that the model undergoes a co-dimension one bifurcation, encompassing flip and Neimark–Sacker bifurcations, utilizing the center manifold theorem and bifurcation theory. To manage the chaos resulting from the Neimark–Sacker bifurcation, we apply the OGY feedback control method and a hybrid control methodology. Finally, we present numerical simulations to validate the theoretical discussion.

Primary production in the bays of the novaya zemlya archipelago (Kara Sea) in the contrasting glacial and non-glacial environmental conditions

Ongoing warming is leading to the accelerated shrinkage of glaciers located on Arctic islands. Consequently, the influence of glacial meltwater on phytoplankton primary production in Arctic bays becomes critically important in an era of warming. This work studies the spatiotemporal variation of primary production and chlorophyll a concentration in the bays along the eastern coast of the Novaya Zemlya archipelago. Data were collected during nine cruises performed from July to October (2013–2022). The effect of underwater photosynthetically available radiation (PAR) and nutrients on primary production was assessed separately for bays influenced by glacial meltwater (glacial bays) and those without such influence (non-glacial bays). The median value of water column-integrated primary production (IPP) for all bays was 38 mgC m−2 d−1, characterizing them as oligotrophic areas. IPP in non-glacial bays was found to be 2.3-fold and 1.4-fold higher than that in glacial bays during summer and autumn, respectively. Underwater PAR was the main abiotic factor determining IPP during the ice-free period. In the entire bays nutrient concentrations were high, exceeding the limiting values for growth and photosynthesis of phytoplankton. It was concluded that the high turbidity from glacial meltwater runoff leads to decreased underwater PAR and, consequently, to a decline in IPP. This study demonstrates that rapid warming could have a negative impact on the productivity of high Arctic bays and their adjacent areas.

Characterizing spatio-temporal variations of dimethyl sulfide in the Yellow and East China Sea based on BP neural network

Dimethyl sulfide (DMS), an organic volatile sulfide produced from Dimethylsulfoniopropionate (DMSP), exerts a significant impact on the global climate change. Utilizing published literature data spanning from 2005 to 2020, a BP neural network (BPNN) model of the surface seawater DMS in the Yellow and East China Sea (YECS) was developed to elucidate the influence of various marine factors on the DMS cycle. Results indicated that the six parameters inputted BPNN model, that include the time (month), latitude and longitude, sea-surface chlorophyll a (Chl-a), sea-surface temperature (SST), and sea-surface salinity (SSS), yielded the optimized simulation results (R2 = 0.71). The optimized estimation of surface seawater DMS in the YECS were proved to be closely aligned with the observed data across all seasons, which demonstrated the model’s robust applicability. DMS concentration in surface seawater were found to be affected by multiple factors such as Chl-a and SST. Comparative analysis of the three environmental parameters revealed that Chl-a exhibited the most significant correlation with surface seawater DMS concentration in the YECS (R2 = 0.20). This underscores the pivotal role of chlorophyll in phytoplankton photosynthesis and DMS production, emphasizing its importance as a non-negligible factor in the study of DMS and its sulfur derivatives. Furthermore, surface seawater DMS concentration in the YECS exhibited positive correlations with Chl-a and SST, while displaying a negative correlation with SSS. The DMS concentration in the YECS show substantial seasonal variations, with the maximum value (5.69 nmol/L) in summer followed in decreasing order by spring (3.96 nmol/L), autumn (3.18 nmol/L), and winter (1.60 nmol/L). In the YECS, there was a gradual decrease of DMS concentration from the nearshore to the offshore, especially with the highest DMS concentration concentrated in the Yangtze River Estuary Basin and the south-central coastal part off the Zhejiang Province. Apart from being largely composed by the release of large amounts of nutrients from anthropogenic activities and changes in ocean temperature, the spatial and temporal variability of DMS may be driven by additional physicochemical parameters.

Carbon sequestration reduced by the interference of nanoplastics on copper bioavailability

Microplastics (MPs) have been recognized as a serious new pollutant, especially nanoplastics (NPs) pose a greater threat to marine ecosystem than larger MPs. Within these ecosystems, phytoplankton serve as the foundational primary producers, playing a critical role in carbon sequestration. Copper (Cu), a vital cofactor for both photosynthesis and respiration in phytoplankton, directly influences their capacity to regulate atmospheric carbon. Therefore, we assessed the impact of NPs on Cu bioavailability and carbon sequestration capacity. The results showed that polystyrene nanoplastics (PS-NPs) could inhibit the growth of Thalassiosira weissflogii (a commonly used model marine diatom) and Chlorella pyrenoidosa (a standard strain of green algae). The concentration of Cu uptake by algae has a significant negative correlation with COPT1 (a Cu uptake protein), but positive with P-ATPase (a Cu efflux protein). Interestingly, PS-NPs exposure could reduce Cu uptake and carbon Cu sequestration capacity of algae, i.e., when the concentration of PS-NPs increases by 1 mg/L, the concentration of fixed carbon dioxide decreases by 0.0023 ppm. This provides a new perspective to reveal the influence mechanisms of PS-NPs on the relationship between Cu biogeochemical cycling and carbon source and sink.

Examining the effects of elevated CO2 on the growth kinetics of two microalgae, Skeletonema dohrnii (Bacillariophyceae) and Heterosigma akashiwo (Raphidophyceae)

Carbon dioxide (CO2) serves as the primary substrate for the photosynthesis of phytoplankton, forming the foundation of marine food webs and mediating the biogeochemical cycling of C and N. We studied the effects of CO2 variation on the Michaelis-Menten equations and elemental composition of Skeletonema dohrnii and Heterosigma akashiwo. CO2 functional response curves were conducted from 100 to 2000 ppm. The growth of both phytoplankton was significantly affected by CO2, but in different trends. The growth rate of S. dohrnii increased as CO2 levels rose up to 400 ppm before reaching saturation. In contrast to S. dohrnii, the growth rate of H. akashiwo increased with CO2 increasing up to 1000 ppm, and then CO2 saturated. In addition, H. akashiwo showed a slower growth rate than S. dohrnii for all CO2 concentrations, aside from 1000 ppm, and the Michaelis-Menten equations revealed that the half-saturation constant of H. akashiwo was higher than S. dohrnii. An increase in CO2 concentration was seen to significantly affected the POC: Chl-a of both S. dohrnii and H. akashiwo, however, the effects on their elemental composition were minimal. Overall, our findings indicate that H. akashiwo had a more positive reaction to elevated CO2 than S. dohrnii, and with higher nutrient utilization efficiency, while S. dohrnii exhibited higher carbon fixation efficiency, which is in line with their respective carbon concentrating mechanisms. Consequently, elevated CO2, either alone or in combination with other limiting factors, may significantly alter the relative relationships between these two harmful algal blooms (HAB) species over the next century.

Estimating Surface Nitrate Concentrations in the Coastal Areas of the Around Savu Sea and Southern Sumba Island Based on Remote Sensing Data

Nitrate is an essential nutrient in phytoplankton's photosynthesis process. In addition, phytoplankton uses nitrate for their growth and reproduction. Nitrate abundance on the coast will affect primary productivity and biogeochemical cycles. The availability of nitrate observation data, especially around the Savu Sea coast, is minimal. In this study, the estimation of nitrate in the coastal area of the southern part of Sumba Island and the eastern part of Savu Island by using the generalized additive model (GAM). Seventy-one nitrate observation data were used to build the GAM model, and remote sensing data were used as input data for nitrate estimation. Sea Surface Temperature (SST) and chlorophyll-a data were obtained from Aqua-MODIS. Sea Surface Salinity (SSS) and Sea Surface Windspeed (SSW) data were obtained from a Microwave Imaging Radiometer with Aperture Synthesis (MIRAS) Soil Moisture-Ocean Salinity (SMOS), and Advanced Scatterometer (ASCAT), respectively. This study uses the Generalized Additive Model (GAM) approach to predict the distribution of nitrate concentrations and determine the main driving factors associated with nitrate. Based on the result, temperature is the dominant factor in nitrate estimation, while chlorophyll-a has a relatively small influence. The best model to predict nitrate distribution uses four parameters, namely SST, SSS, SSW, and chlorophyll-a. The validation results of the expected nitrate value obtained from the model with the observed nitrate value obtained results with the same value range of 0 - 0.35; the difference is the value of the distribution. From the comparison results, the R2 value is 0.357.

Lake-wide measurements of primary productivity in Lake Erie

Abstract Few lake-wide, seasonal primary production measurements have been made in Lake Erie. None more recent than 1997 have been reported in the literature. In 2019 we used 13C uptake to measure production at 11 stations across the lake during three surveys in May, July, and September and at four of these stations during two additional surveys in April and August. Samples were collected at two depths (2 m and 6 m) and incubated on deck using eight levels of irradiance. We fit the resultant photosynthesis-irradiance curves with models that included the initial slope at low light levels, the maximum photosynthesis rate at light saturation, and when warranted, the negative slope at high irradiance. During May, there was little variation in chlorophyll-normalized volumetric productivity with sample depth, and productivity generally was higher nearshore and in the western basin than it was offshore. The distinction between nearshore and offshore stations was less pronounced in July, but nearshore productivity was higher than offshore in September. Using the photosynthesis data from all five surveys, chlorophyll concentration profiles, and estimated clear-sky solar insolation, we calculated time series of vertically integrated daily production at a western basin station, two central basin stations, and an eastern basin station. Central basin production was highest during August, estimated to be 748 mg C m-2 d-1 and 779 mg C m-2 d-1 at our two stations. Production peaked in July in the western basin (510 mg C m-2 d-1) and September in the eastern basin (421 mg C m-2 d-1). Whole-lake seasonal areal phytoplankton photosynthesis was estimated as 1.661E6 tonnes, about half of estimates made in the 1990s using 14C methods. These results inform our understanding of spatial-temporal trends in Lake Erie productivity and highlight the need for continued measurements of Lake Erie primary production.

Dinámica de la excreción fitoplanctónica de materia orgánica (Laguna de Chascomús, Prov. de Buenos Aires, Argentina)

The rate of phytoplankton excretion of organic matter was measured by acidification of water samples incubated in the laboratory following the Steemann Nielscn method (1952). After the release of inorganic 14C,14C-organic carbón was estimated through Berman's methodology (1976).
 Percentages of excretion of organic carbón ranged bctween 8 and 18% (mean value 13,5%) were the lowest observed, supporting the hypothesis that the cxcretion is lower in eutrophic waters. Thesc percentages incrcascd during winter and decresed during summer: instead rates of release of organic matter showed a bimodal distribution with two máximum valúes, one in winter and other in summer (57,6 and 72,0 mg C • m-3 • h-1, respectively). Percentages of cxcretion showed and inverse relationship with phytoplankton photosynthesis and chlorophyll-a concentrations (P < 0,01). Scasonal fluctuations of excretion were influenced by light intcnsity, with higher light rates during winter than in summer.

Effects of Typhoon Chanthu on Marine Chlorophyll a, Temperature and Salinity

A typhoon is a severe weather process in tropical oceans. Typhoon transit is often accompanied by strong convective weather, such as gales and rainstorms, which threatens fishery, property, and human safety. In this study, the effects of typhoon Chanthu on chlorophyll a (Chl a), temperature, and ocean surface salinity are analyzed using remote sensing data. The results illustrate that before the transit of Chanthu (6–12 September), the mean concentration of Chl a and sea surface salinity (SSS) are low (0.74 mg/m3, 30.59 psu, respectively), while the mean sea surface temperature (SST) is high (29.01 °C). After the typhoon transits (13–30 September), the mean Chl a concentration and salinity increase (1.29 mg/m3, 30.87 psu respectively), while the mean SST decrease (27.43 °C). The Ekman pumping transports nutrients from the deep ocean to the surface layer, promotes the photosynthesis of surface phytoplankton, and increases the concentration of sea surface Chl a. Typhoon Chanthu causes the mixing and entrainment of the upper ocean, which causes the deep cold water of the ocean to rise into the mixed layer and cause the SST to decrease. Severe vertical mixing transports deep high-salt water to the surface, causing SSS to rise. The results of this study have important scientific significance and application value for developing coastal economy, aquaculture, and fishery.

Hydrological connectivity controls on the dynamics of particulate organic matter in a semi-enclosed mariculture bay

Semi-enclosed bay provides favorable conditions for mariculture, however, mariculture activities can disrupt hydrological connectivity of river-coastal continuum and create a bioreactor for particulate organic matter (POM). The impacts of increasing mariculture activities on POM dynamics, including sources, transportation, and transformation, associated dissolved oxygen and nutrients in semi-enclosed bays remain unclear. This study investigated carbon and nitrogen contents, as well as the stable isotopic compositions of POM (δ13CPOC and δ15NPN) in a semi-enclosed bay, Sansha Bay, which is the largest mariculture bay for large yellow croaker in China and is influenced by riverine input and nearshore coastal waters. Our findings revealed that, spatially, riverine POM dominated along main channel that connects river inlet and bay outlet under the influence of water mixing (C:N ratios ∼ 5.7–15.8, δ13CPOC ∼ −21‰--24‰, and δ15NPN ∼ 13‰-17‰). On top of water mixing, autochthonous POM dominates in off-main channel (C:N ratio 5–9, δ13CPOC -21‰--17‰, and δ15NPN 7.0‰-8.5‰). Using a three end-member isotopic mixing model, our data shows that the POM in main channel comprises ∼ 90% of riverine POM and ∼ 10% of phytoplankton production, while in off-main channel, ∼ 59% of POM was contributed by autochthonous phytoplankton production and the rest ∼ 41% was sourced from main channel. Furthermore, riverine POM degradation consumes oxygen along main channel, forming consistent with the classic Redfield stoichiometry of aerobic respiration (N:O2, ∼ 0.13 ± 0.02). In contrast, in off-main channel where water exchange is slower, the degradation of fish feed regenerates dissolved inorganic nitrogen, which subsequently stimulates phytoplankton production, leading to oxygen production following the canonical Redfield stoichiometry of phytoplankton photosynthesis (N:O2, ∼ 0.10 ± 0.01). Our results highlight the influence of hydrological connectivity, superimposed by mariculture activity, in shaping POM biogeochemistry and dissolved oxygen dynamics in semi-enclosed bays. These findings provide important insights for the remediation of risks of hypoxia and harmful algal blooms in coastal mariculture ecosystems.

Impacts of Basal Melting of the Totten Ice Shelf and Biological Productivity on Marine Biogeochemical Components in Sabrina Coast, East Antarctica

AbstractTo clarify the impacts of basal melting of the Antarctic ice sheet and biological productivity on biogeochemical processes in Antarctic coastal waters, concentrations of dissolved inorganic carbon (DIC), total alkalinity (TA), inorganic nutrients, chlorophyll a, and stable oxygen isotopic ratios (δ18O) were measured from the offshore slope to the ice front of the Totten Ice Shelf (TIS) during the spring/summer of 2018, 2019, and 2020. Modified Circumpolar Deep Water (mCDW) intruded onto the continental shelf off the TIS and flowed along bathymetric troughs into the TIS cavity, where it formed a buoyant mixture with glacial meltwater from the ice shelf base. Physical oceanographic processes mostly determined the distributions of DIC, TA, and nutrient concentrations. However, photosynthesis and dilution by meltwater from sea ice and the ice shelf base decreased DIC, TA, and nutrient concentrations in surface water near the ice front. These causes also reduced the partial pressure of CO2 (pCO2) in surface water by more than 100 μatm with respect to mCDW in austral summer of 2018 and 2020, and the surface water became a strong CO2 sink for the atmosphere. Phytoplankton photosynthesis changed DIC and TA in a molar ratio of 106:16. Thus, pCO2 decreased mostly as a result of photosynthesis while dilution by glacial and sea ice meltwater had a small effect. The nutrient consumption ratio suggested that photosynthesis was stimulated by iron in the water column, supplied to the surface layer via buoyancy‐driven upwelling and basal ice shelf meltwater in addition to sea ice meltwater.

Unexpected low CO2 emission from highly disturbed urban inland waters

Constituents and functionality of urban inland waters are significantly perturbed by municipal sewage inputs and tailwater discharge from wastewater treatment plants. However, large knowledge gaps persist in understanding greenhouse gas dynamics in urban inland waters due to a lack of in situ measurements. Herein, via a 3-year field campaign (2018–2020), we report river and lake CO2 emission and related aquatic factors regulating the emission in the municipality of Beijing. Mean pCO2 (546 ± 481 μatm) in the two urban lakes was lower than global non-tropical freshwater lakes and CO2 flux in 47% of the lake observations was negative. Though average pCO2 in urban rivers (3124 ± 3846 μatm) was among the higher range of global rivers (1300–4300 μatm), average CO2 flux was much lower than the global river average (99.7 ± 147.5 versus 358.4 mmol m−2 d−1). The high pCO2 cannot release to the atmosphere due to the low gas exchange rate in urban rivers (average k600 of 1.3 ± 1.3 m d−1), resulting in low CO2 flux in urban rivers. Additionally, eutrophication promotes photosynthetic uptake and aquatic organic substrate production, leading to no clear relationships observed between pCO2 and phytoplankton photosynthesis or dissolved organic carbon. In consistence with the findings, CO2 emission accounted for only 32% of the total greenhouse gas (GHG) emission equivalence (CO2, CH4 and N2O) in Beijing waters, in contrast to a major role of anthropogenic CO2 to anthropogenic GHG in the atmosphere in terms of radiative forcing (66%). These results pointed to unique GHG emission profiles and the need for a special account of urban inland waters in terms of aquatic GHG emissions.

The V-type ATPase enhances photosynthesis in marine phytoplankton and further links phagocytosis to symbiogenesis

Diatoms, dinoflagellates, and coccolithophores are dominant groups of marine eukaryotic phytoplankton that are collectively responsible for the majority of primary production in the ocean.1 These phytoplankton contain additional intracellular membranes around their chloroplasts, which are derived from ancestral engulfment of red microalgae by unicellular heterotrophic eukaryotes that led to secondary and tertiary endosymbiosis.2 However, the selectable evolutionary advantage of these membranes and the physiological significance for extant phytoplankton remain poorly understood. Since intracellular digestive vacuoles are ubiquitously acidified by V-type H+-ATPase (VHA),3 proton pumps were proposed to acidify the microenvironment around secondary chloroplasts to promote the dehydration of dissolved inorganic carbon (DIC) into CO2, thus enhancing photosynthesis.4,5 We report that VHA is localized around the chloroplasts of centric diatoms and that VHA significantly contributes to their photosynthesis across a wide range of oceanic irradiances. Similar results in a pennate diatom, dinoflagellate, and coccolithophore, but not green or red microalgae, imply the co-option of phagocytic VHA activity into a carbon-concentrating mechanism (CCM) is common to secondary endosymbiotic phytoplankton. Furthermore, analogous mechanisms in extant photosymbiotic marine invertebrates6,7,8 provide functional evidence for an adaptive advantage throughout the transition from endosymbiosis to symbiogenesis. Based on the contribution of diatoms to ocean biogeochemical cycles, VHA-mediated enhancement of photosynthesis contributes at least 3.5 Gtons of fixed carbon per year (or 7% of primary production in the ocean), providing an example of a symbiosis-derived evolutionary innovation with global environmental implications.

Реконструкция величин фотосинтеза в Онежском озере по концентрации хлорофилла а

Phytoplankton photosynthesis in Lake Onego was measured in 1989-2006. An attempt was made to calculate photosynthesis by daily assimilation numbers and chlorophyll a concentration measured in 2007-2021 to supple-ment data on the primary production. Daily assimilation numbers were calculated by simultaneously measured photosynthesis and chlorophyll in 1989-2006 for different areas and seasons of a limnically complex water body. A comparative statistical analysis of the size-structural characteristics of phytoplankton in 1989-2006 and 2007-2021 was performed to assess the possibility of using the obtained assimilation numbers to restore photosynthesis values. Comparison of the average cell volume for the phytocenosis and the ratio of diatoms and smaller non-diatoms showed their similarity in both periods in the main water area of the lake. Only in the central sector of Kondopoga Bay, which has been influenced by biogenic loads from the trout farms since the 2000s, the average cell volume decreased significantly and the proportion of diatom plankton also decreased. Photosynthesis was not calculated for this sector. The calculated assimilation numbers were similar for almost the entire water area of the lake. The maximum daily values were observed in summer with medians from 11.8 to 18.4 µg C/µg Chl in different parts of the water body. In Kondopoga Bay, which during both study periods was experiencing a biogenic load of wastewater from the pulp and paper mill, their median values in summer reached 40.3 and 29.6 µg C/µg Chl day–1 in the top and open parts, respectively. It was possible to restore 197 values of photosynthesis by chlorophyll a measured in 2007-2021and by the calculated assimilation numbers in the surface water layer of different areas in Lake Onego in different seasons.

Structural Study of the Cobetia marina Bacteriophage 1 (Carin-1) by Cryo-EM.

Most of studied bacteriophages (phages) are terrestrial viruses. However, marine phages are shown to be highly involved in all levels of oceanic regulation. They are, however, still largely overlooked by the scientific community. By inducing cell lysis on half of the bacterial population daily, their role and influence on the bacterial biomass and evolution, as well as their impact in the global biogeochemical cycles, is undeniable. Cobetia marina virus 1 (Carin-1) is a member of the Podoviridae family infecting the γ-protoabacteria C. marina. Here, we present the almost complete, nearly-atomic resolution structure of Carin-1 comprising capsid, portal, and tail machineries at 3.5 Å, 3.8 Å and 3.9 Å, respectively, determined by cryo-electron microscopy (cryo-EM). Our experimental results, combined with AlphaFold2 (AF), allowed us to obtain the nearly-atomic structure of Carin-1 by fitting and refining the AF atomic models in the high resolution cryo-EM map, skipping the bottleneck of de-novo manual building and speeding up the structure determination process. Our structural results highlighted the T7-like nature of Carin1, as well as several novel structural features like the presence of short spikes on the capsid, reminiscent those described for Rhodobacter capsulatus gene transfer agent (RcGTA). This is, to our knowledge, the first time such assembly is described for a bacteriophage, shedding light into the common evolution and shared mechanisms between gene transfer agents and phages. This first full structure determined for a marine podophage allowed to propose an infection mechanism different than the one proposed for the archetypal podophage T7. IMPORTANCE Oceans play a central role in the carbon cycle on Earth and on the climate regulation (half of the planet's CO2 is absorbed by phytoplankton photosynthesis in the oceans and just as much O2 is liberated). The understanding of the biochemical equilibriums of marine biology represents a major goal for our future. By lysing half of the bacterial population every day, marine bacteriophages are key actors of these equilibriums. Despite their importance, these marine phages have, so far, only been studied a little and, in particular, structural insights are currently lacking, even though they are fundamental for the understanding of the molecular mechanisms of their mode of infection. The structures described in our manuscript allow us to propose an infection mechanism that differs from the one proposed for the terrestrial T7 virus, and might also allow us to, in the future, better understand the way bacteriophages shape the global ecosystem.

Three stages in the variation of the depth of hypoxia in the California Current System 2003–2020 by satellite estimation

The depth of hypoxia (DOH) is the shallowest depth at which the waters become hypoxic (oxygen concentration < 60 μmol kg−1), is a crucial indicator of the formation and expansion of oxygen minimum zones (OMZs). In this study, a nonlinear polynomial regression inversion model was developed to estimate the DOH in the California Current System (CCS), based on the dissolved oxygen profile detected by the Biogeochemical-Argo (BGC-Argo) float and remote sensing data. Satellite-derived net community production was used in the algorithm development, to denote the combined effect of phytoplankton photosynthesis and O2 consumption. Our model performs well, with a coefficient of determination of 0.82 and a root mean square error of 37.69 m (n = 80) from November 2012 to August 2016. Then, it was used to reconstruct the variation in satellite-derived DOH in the CCS from 2003 to 2020, and three stages of the DOH variation trend were identified. From 2003 to 2013, the DOH showed a significant shallowing trend due to the intense subsurface O2 consumption caused by strong phytoplankton production in the CCS coastal region. The trend was interrupted by two successive strong climate oscillation events from 2014 to 2016, which led to a significant deepening of the DOH and a slowing, or even reversal, of the variations in other environmental parameters. After 2017, the effects of climate oscillation events gradually disappeared, and the shallowing pattern in the DOH recovered slightly. However, by 2020, the DOH had not returned to the pre-2014 shallowing characteristic, which would lead to continuing complex ecosystem responses in the context of global warming. Based on the satellite inversion model of DOH in the CCS, we provide a new insight on the high-resolution spatiotemporal OMZ variations during an 18-year period in the CCS, which will aid in the evaluation and prediction of local ecosystems variation.

Diurnal variation characteristics of thermal structure in a deep reservoir and the effects of selective withdrawal

Thermal structure significantly impacts the reservoir ecology and environment. The diurnal temperature variation (DTV) influences the photosynthesis and respiration of phytoplankton in day and night, and meanwhile changes the vertical density convection and current. Selective withdrawal is practical to control the withdrawal elevation and outflow temperature, and can also influence the thermal structure of reservoir area. Previous research mainly focusses on the long-term change pattern of thermal structure in reservoir, while the diurnal thermal dynamics is less studied, and the effects of selective withdrawal on the DTV is still unknow. Hence, this paper aims to illustrate the diurnal variation characteristics of thermal structure in reservoir, and moreover to reveal the corresponding effects of selective withdrawal. Taking the Sanbanxi Reservoir as study case, a hydrodynamic–temperature numerical model with hourly simulating resolution was built and validated using measured temperature profile during August 2015 to August 2016, based on the CE-QUAL-W2. The effects of selective withdrawal schemes, including different withdrawal elevation and withdrawal types, were illuminated. The discrete Fourier transform (DFT), energy spectrum and statistical analysis were used. This paper showed the following: (1) In the reservoir area, there were three main regions with significant DTV, i.e., the surface layer, the 10-m water layer and the 60-m water layer (withdrawal layer). For the baseline (existing intake), the average DTVs were 0.657, 0.497 and 0.174 °C, respectively, at the surface layer, the 10-m-depth layer and the 60-m-depth layer. (2) From the upstream to the downstream channels of reservoir, the DTV kept unchanged at the surface layer, and increased at the 10-m-depth layer and 60-m-depth layer. (3) A higher withdrawal elevation and the internal weir schemes (stoplog gate/temperature-control curtain) could increase the epilimnetic DTV and energy density, and were suggested to mitigate the hypoxia and nutrient enrichment, compared with a lower withdrawal elevation and the multi-level intake scheme. The results could provide technical support for the ecological management of reservoir and engineering design of the selective withdrawal.