The increase in pollution, using photocatalytic materials to degrade organic pollutants remains in force. ZnO is the most used semiconductors for photocatalytic applications. The oriented growth of nanostructures on substrates or seed layers (SL) improves the physical and chemical properties compared to the bulk-grown material. In this work, the photocatalytic efficiency of ZnO nanorods and nanoflowers was evaluated, obtained by hydrothermal growth (HG) over SL deposited by the spin-coating technique (SCT). The characterizations results showed two types of growth: 1D nanostructures with a dimension in the range of 400–1000nm and diameters of 70–100nm, and 1D microstructures with approximate 5–11μm length and diameters of 1–2μm. However, in the 7 SL system, micro prisms were generated, which led to the formation of 3D nanostructures (micro flowers) of ZnO with a maximum of 6μm in diameter. The system with 1D and 3D ZnO nanostructures, grown in 7 SL, was the most efficient methylene blue degradation. Achieving 100% transformation in 120min, with a rate constant of 2.98×10−2min−1. The results show that the SCT deposit combined with the sol–gel method and HG produces 1D and 3D structures with high potential in photocatalytic degradation.