Furfural, as a typical byproduct produced during the hydrolysis of lignocellulose biomass, is harmful to the photo fermentation hydrogen production. In this work, the effects of furfural on the photo fermentation hydrogen production by Rhodobacter capsulatus using glucose as substrate were investigated. The characteristics of cell growth, hydrogen production, and fermentation end-products with the addition of different concentrations of furfural (0–20 mM) were studied. The results showed that furfural negatively affected the maximum hydrogen production rate and total hydrogen yield. The maximum hydrogen yield of 2.59 ± 0.13 mol-H2/mol-glucose was obtained without furfural. However, 5 mM furfural showed a 40% increase in cell concentration. Furfural in high concentrations can favor the overproduction and accumulation of inhibitive end-products. Further analysis of energy conversion efficiency showed that most of the energy in the substrate was underused and unconverted when the furfural concentration was high. The maximum glucose consumption (93%) was achieved without furfural, while it dramatically declined to 7% with 20 mM furfural addition. The index of half-maximal inhibitory concentration was calculated as 13.40 mM. Moreover, the possible metabolic pathway of furfural and glucose was discussed.