Phosphonate Moiety Research Articles

Synthesis and Immunomodulatory Activity of Fluorine-Containing Bisphosphonates.

Immune checkpoint blockade using anti-PD-1/PD-L1 or anti-CTLA-4 monoclonal antibodies (mAbs) has revolutionized cancer treatment. However, many types of cancer do not respond and for those that do, only a minority of patients achieve durable remissions. Therefore, oncoimmunologists are working to develop adoptive cell therapies for non-hematopoietic tumors by harnessing immune effector cells such as αβ T cells and γδ T cells. In contrast to conventional αβ T cells that recognize peptides in the context of MHC class I or II molecules, γδ T cells expressing Vγ2Vδ2 T cell receptors (also termed Vγ9Vδ2) are stimulated by isoprenoid metabolites (phosphoantigens) such as isopentenyl diphosphate in a butyrophilin-3A1-dependent manner. Vγ2Vδ2 T cells kill almost all types of tumor cells that have been treated with bisphosphonates. In this study, we synthesized a series of fluorine-containing bisphosphonates based on current drugs and found that they stimulated Vγ2Vδ2 T cell killing of tumor cells. A fluorine-containing prodrug analogue of zoledronate where phosphonate moieties were masked with pivaloyloxymethyl groups markedly enhanced Vγ2Vδ2 T-cell-mediated cytotoxicity, and also promoted the expansion of peripheral blood Vγ2Vδ2 T cells. These results demonstrate that a prodrug of a fluorine-containing zoledronate analogue can sensitize tumor cells for killing as well as expand Vγ2Vδ2 T cells for adoptive cell therapy.

Amino acid based prodrugs of a fosmidomycin surrogate as antimalarial and antitubercular agents.

Fosmidomycin is a natural antibiotic with promising IspC (DXR, 1-deoxy-d-xylulose-5-phosphate reductoisomerase) inhibitory activity. This enzyme catalyzes the first committed step of the non-mevalonate isoprenoid biosynthesis pathway, which is essential in Plasmodium falciparum and Mycobacterium tuberculosis. Mainly as a result of its high polarity, fosmidomycin displays suboptimal pharmacokinetic properties. Furthermore, fosmidomycin is inactive against M. tuberculosis as a result of its inability to penetrate the bacterial cell wall. Temporarily masking the phosphonate moiety as a prodrug has the potential to solve both issues. We report the application of two amino acid based prodrug approaches on a fosmidomycin surrogate. Conversion of the phosphonate moiety into tyrosine-derived esters increases the in vitro activity against asexual blood stages of P. falciparum, while phosphonodiamidate prodrugs display promising antitubercular activities. Selected prodrugs were tested in vivo in a P. berghei malaria mouse model. These results indicate good in vivo antiplasmodial potential.

Functionalization of Intact Trimetaphosphate: A Triphosphorylating Reagent for C, N, and O Nucleophiles.

Trimetaphosphate (TriMP, [P3O9]3-) reacts with PyAOP ([(H8C4N)3PON4C5H3][PF6]) to yield an activated TriMP, [P3O9P(NC4H8)3]- (1), incorporating a phosphonium moiety. Anion 1 is isolated as its bis(triphenylphosphine)iminium (PPN) salt in 70% yield and phosphorylates nucleophiles with elimination of phosphoramide OP(NC4H8)3. Treatment of 1 with amines HNR1R2 generates [P3O8NR1R2]2- (2a: R1 = R2 = Et; 2b: R1 = H, R2 = tBu) in greater than 70% yield as mixed PPN and alkyl ammonium salts. Treatment of 1 with primary alcohols in the presence of a tertiary amine base results in salts of intact TriMP alkyl esters [P3O9R]2- (3a: R = Me; 3b: R = Et) in greater than 60% isolated yield. Reaction of 1 with [PPN][H2PO4] provides orthophosphoryl TriMP (4, [P4O12H2]2-) in 40% yield as the PPN salt. Treatment of 1 with Wittig reagent H2CPPh3 (4 equiv) provides phosphorus ylide [P3O8CHPPh3]2- (5) in 61% yield as a mixed salt. Ylide 5 reacts with water to provide [P3O8Me]2- (6) and with aldehydes to give olefins [P3O8CHCHR]2- (7a: R = H; 7b: R = 4-C6H4Br), products in which one TriMP oxygen is replaced by a phosphonate P-C linkage. Treatment of intact TriMP derivatives 2a, 2b, 3a, and 7a with aqueous tetrabutylammonium hydroxide results in ring opening to linear triphosphate derivatives. X-ray crystal structures are provided for salts of 1, 2a, 3a, and 4.

Assembly, disassembly and reassembly: a "top-down" synthetic strategy towards hybrid, mixed-metal {Mo10Co6} POM clusters.

Polyoxometalates (POMs) are commonly prepared using a "bottom-up" synthetic procedure. The alternative "top-down" approach of disassembling a pre-formed POM unit to generate new synthetic intermediates is promising, but relatively comparatively underused. In this paper, a rationale for the top-down method is provided, demonstrating that this approach can generate compounds that are fundamentally inaccessible from simple bottom-up assembly. We demonstrate this principle through the synthesis of a series of 10, new, mixed-metal, hybrid compounds with the general formula [TBA]2[MoVI10CoII6O30(RpPO3)6(RcCOO)2(L)x(H2O)6] (TBA = tetrabutylammonium, Rp = phosphonate moiety, Rc = carboxylate moiety, L = pyridyl ligand, and x = 2-4), including a one-dimensional polyoxometalate-based coordination polymer. We propose that these structures are generated from {MoxO3x-1} fragments that cannot be accessed from bottom-up assembly alone. The POM clusters are stabilised by three distinct classes of organic ligand - organophosphonate, carboxylate and pyridyl ligands - which can each be substituted independantly, thus providing a controlled route to ligand functionalisation.

Alpha-carboxynucleoside phosphonates: direct-acting inhibitors of viral DNA polymerases.

Acyclic nucleoside phosphonates represent a well-defined class of clinically used nucleoside analogs. All acyclic nucleoside phosphonates need intracellular phosphorylation before they can bind viral DNA polymerases. Recently, a novel class of alpha-carboxynucleoside phosphonates have been designed to mimic the natural 2'-deoxynucleotide 5'-triphosphate substrates of DNA polymerases. They contain a carboxyl group in the phosphonate moiety linked to the nucleobase through a cyclic or acyclic bridge. Alpha-carboxynucleoside phosphonates act as viral DNA polymerase inhibitors without any prior requirement of metabolic conversion. Selective inhibitory activity against retroviral reverse transcriptase and herpesvirus DNA polymerases have been demonstrated. These compounds have a unique mechanism of inhibition of viral DNA polymerases, and provide possibilities for further modifications to optimize and fine tune their antiviral DNA polymerase spectrum.

Phosphorus-Based α-Amino Acid Mimetic for Enhanced Flame-Retardant Properties in an Epoxy Resin

This work demonstrates the introduction of a phosphonate moiety into a commonly used curing agent, 4,4′-diaminodiphenylmethane (DDM), via an α-aminophosphonate. This compound (DDMP) can be prepared and isolated in analytical purity in under 1 h and in good yield (71 %). Thermoset polymer (epoxy-derived) samples were prepared using a room-temperature standard cure (SC) and a post-cured (PC) protocol to encourage incorporation of the α-aminophosphonate into the polymer network, with improved flammability properties observed for the latter. Thermogravimetric analysis under a nitrogen atmosphere showed increased char yield at 600°C, and similar observations were made when analysis was conducted in air. Significant reductions in flammability are observed at very low phosphorus content (P% = 0.16–0.49 %), demonstrated by higher char yields (25.5 from 14.0 % in air), decreased burn time from ignition (60 to 24 s), and decreased mass loss after ignition (87.6 to 58.5 %). Limiting Oxygen Index for the neat polymer (P% = 0 %, 20.3 ± 0.8 %) increased with increasing α-aminophosphonate additive (P% = 0.16 %, 20.8 ± 0.6 %; P% = 0.32 %, 21.4 ± 0.4 %; P% = 0.49 %, 22.6 ± 0.8 %).

Phosphorus chemistry: from small molecules, to polymers, to pharmaceutical and industrial applications

Abstract (Poly)phosphonic acids constitute an exciting family of phosphorus compounds. One of the attractive attributes of these molecules is the rich chemistry of the phosphonate moiety, and, in particular, its high affinity for metal ions and mineral surfaces. Whether the phosphonate group belongs to a “small” molecule or to a polymeric matrix, phosphonate-containing compounds have found a phalanx of real-life applications. Herein, we address a special category of phosphorus compounds called bisphosphonates (BPs, a.k.a. “-dronates”) and also phosphonate containing polymers. The success of BPs in mitigating osteoporosis notwithstanding, these “-dronate” drugs present a number of challenges. Nevertheless, the main drawback of BPs is their limited oral bioavailability. It is, therefore, imperative to design and fabricate “smart” systems that allow controlled delivery of the active BP agent. Here, easy-to-prepare drug delivery systems are presented based on silica gels. These have been synthesized, characterized, and studied as hosts in the control release of several BP drugs. They exhibit variable release rates and final % release, depending on the nature of bisphosphonate (side-chain length, hydro-philicity/-phobicity, water-solubility), cations present, pH and temperature. These gels are robust, injectable, re-loadable and re-usable. Furthermore, alternative drug delivery systems are presented that are based on metal-organic frameworks (MOFs). In these biologically acceptable inorganic metal ions have been incorporated, together with BPs as the organic portion. These materials have been synthesized, characterized, and studied for the self-sacrificial release (by pH-driven dissolution) of the BP active ingredient. Several such materials were prepared with a variety of bisphosphonate drugs. They exhibit variable release rates and final % release, depending on the actual structure of the metal-bisphosphonate material. Lastly, we will present the use of phosphonate-grafted polymers as scale inhibitors for water treatment applications.

Syntheses, characterization and chelating properties of guanidobenzimidazole and guanidophosphonatebenzimidazole

The synthesis of guanidine derivatives of benzimidazole namely, guanidinobenzimidazole, (GBM), guanidinophosphonatebenzimidazole, (GPBM), and their chelating properties are reported in this work. The guanidine and phosphonate derivatives were synthesized along with their metal complexes, Fe(II), Co(II), Ni(II) Cu(II) and Zn(II). The ligands were characterized by 1 H NMR, 13 C NMR spectroscopy while both the ligands and the metal complexes were characterized by C.H.N analysis, Percentage Metal Composition, FT-Infrared spectra Analysis , UV–Visible Electronic Spectroscopy and Magnetic susceptibility measurements. The results from the percentage composition of the metals in the complexes suggest that ratio of the metal to ligand is 1: 2 (M: L) where M = Co(II), Ni(II), Cu(II), Fe(II), Zn(II). Thus, the prepared complexes have the general formulae [ML 2 ]. Electronic Spectral analyses indicated the participation of the imidazolic nitrogen atom and the nitrogen in position 12 of the guanidinobenzimidazole ligand in the coordination of the ligand to the metal ions while, the shifts in the position of theν(P=O) absorption band of the phosphonate moiety in the guanidinophosphonatebenzimidazole, (GPBM) ligand from 1265 cm -1 in the free ligand to 1141-1200 cm -1 in the metal complexes suggested that the P=O is most likely involved together with the nitrogen atom in position 12 in the coordination of the metal ions to the guanidinophosphonatebenzimidazole, (GPBM) ligand. The electronic spectral data and the values of the magnetic susceptibility values suggest six coordinate octahedral/ distorted octahedral geometry for all the complexes. Keywords: Characterization, Chelating properties, Guanidine derivatives, Metal Complexes, Synthesis

Gas chromatography selectivity of new phosphonium‐based dicationic ionic liquid stationary phases

Three phosphonium-based dicationic ionic liquids were synthesized as bis(trifluoromethylsulfonyl) imide salts. The three dications had a nonyl spacer between two identical phosphonium-substituted groups. The three phosphonium moieties were dipropyl(phenyl), diphenyl(propyl), and diphenyl(toluyl). The physicochemical properties of the dicationic ionic liquids were appropriate to prepare 30m capillary columns that were tested in gas chromatography. A unique selectivity compared to different polysiloxane or polar cyanosiloxane commercial columns was observed for selected mixes of phthalates, polyaromatic hydrocarbons, polychlorobiphenyls, and dioxins. Only minor selectivity variations were observed with the three dicationic ionic liquids. The different number of aromatic rings on the positively charged phosphonium group did not influence the dicationic ionic liquid selectivity significantly.

3+2] Cycloaddition of N-Aminopyridines and Perfluoroalkynylphosphonates: Facile Synthesis of Perfluoroalkylated Pyrazolo[1,5-a]pyridines Containing a Phosphonate Moiety

1,3-Zwitterions generated from N-aminopyridines in the presence of base are trapped by perfluoroalkynylphosphonates to yield a variety of perfluoroalkylated pyrazolo[1,5-a]pyridine derivatives bearing a phosphonate group. The salient features of these [3+2] cycloadditions include operational simplicity, good tolerance of functional groups, and good to excellent yields at room temperature.

Biochemical and Structural Analysis of FomD That Catalyzes the Hydrolysis of Cytidylyl ( S)-2-Hydroxypropylphosphonate in Fosfomycin Biosynthesis.

In fosfomycin biosynthesis, the hydrolysis of cytidylyl ( S)-2-hydroxypropylphosphonate [( S)-HPP-CMP] to afford ( S)-HPP is the only uncharacterized step. Because FomD is an uncharacterized protein with a DUF402 domain that is encoded in the fosfomycin biosynthetic gene cluster, FomD was hypothesized to be responsible for this reaction. In this study, FomD was found to hydrolyze ( S)-HPP-CMP to give ( S)-HPP and CMP efficiently in the presence of Mn2+ or Co2+. FomD also hydrolyzed cytidylyl 2-hydroxyethylphosphonate (HEP-CMP), which is a biosynthetic intermediate before C-methylation. The kcat/ KM value of FomD with ( S)-HPP-CMP was 10-fold greater than that with HEP-CMP, suggesting that FomD hydrolyzes ( S)-HPP-CMP rather than HEP-CMP in bacteria. The crystal structure of FomD showed that this protein adopts a barrel-like fold, which consists of a large twisted antiparallel β-sheet. This is a key structural feature of the DUF402 domain-containing proteins. Two metal cations are located between the FomD barrel and the two α-helices at the C-terminus and serve to presumably activate the phosphonate group of substrates for hydrolysis. Docking simulations with ( S)-HPP-CMP suggested that the methyl group at the C2 position of the HPP moiety is recognized by a hydrophobic interaction with Trp68. Further mutational analysis suggested that a conserved Tyr107 among the DUF402 domain family of proteins activates a water molecule to promote nucleophilic attack on the phosphorus atom of the phosphonate moiety. These findings provide mechanistic insights into the FomD reaction and lead to a complete understanding of the fosfomycin biosynthetic pathway in Streptomyces.

An Improved Synthesis of the Antibiotic Dehydrophos

Within this work an efficient procedure for the synthesis of the vinyl phosphonate tripeptide dehydrophos is described. This procedure constitutes a significant improvement over previously described strategies, since critical transformations in the synthesis of dehydrophos were carried out in only two synthetic steps, with higher yields and under smooth conditions. Thus, the dehydrophosphoalanine residue was generated by means of the Horner–Wadsworth–Emmons reaction of formaldehyde with a peptide bearing an aminomethylbis(phosphonate) moiety, whereas deprotection of the N‐terminal position of the thus‐obtained dehydrophosphonopeptide and partial hydrolysis of the dimethyl phosphonate residue took place simultaneously. In addition, we confirmed that the chiral integrity of the leucine residue was preserved throughout these transformations.

Comparative study of glyphosate removal on goethite and magnetite: Adsorption and photo-degradation

Glyphosate (PMG) has been demonstrated to be strongly adsorbed on iron oxides, but few studies have been made on the subsequent degradation process. As the mechanism and process of PMG degradation plays a crucial role on its existence in the environment, this study aims to investigate the comparative adsorption and photo-degradation of PMG on goethite and magnetite. The results show that the Langmuir adsorption capacity of goethite (7.9 mg/g) was higher than that of magnetite (6.7 mg/g) at pH = 7. Further clarifying of Zeta potential and attenuated total reflectance Fourier-transform infrared spectroscopy measurements revealed that PMG was absorbed through the coordination of phosphonate moiety. In contrast, PMG degradation due to the photo-catalysis effectiveness of magnetite (kapp = 1.2 h−1) was significantly higher than that of goethite (kapp = 0.4 h−1) at pH = 7. This phenomenon was primarily due to the greater release of the dissolved iron in magnetite which led to the promotion of reactive oxygen species generation in the magnetite/UV system. DFT results show that the formation of FeOP bonds in the presence of iron oxide would change the electron density distribution around the phosphorus center of PMG, and potentially made the CP bond more assailable to ROS. Furthermore, electron spin resonance results identified the existence of OH and O2−, and further tests by adding radical captures proved the domination of OH in degrading PMG. In addition, intermediate identification of PMG revealed that amino acid, carboxyl acid and other inorganic ions were the main products in the process of photo-degradation. Therefore, it is concluded that the comparative exploration of goethite and magnetite on PMG degradation provides an integrated insight into the similar fate of PMG heterogeneous photo-degradation in the environment.

Intracellular Deprotection Reactions Mediated by Palladium Complexes Equipped with Designed Phosphine Ligands.

Discrete palladium(II) complexes featuring purposely designed phosphine ligands can promote depropargylation and deallylation reactions in cell lysates. These complexes perform better than other palladium sources, which apparently are rapidly deactivated in such hostile complex media. This good balance between reactivity and stability allows the use of these discrete phosphine palladium complexes in living mammalian cells, whereby they can mediate similar transformations. The presence of a phosphine ligand in the coordination sphere of palladium also provides for the introduction of targeting groups, such as hydrophobic phosphonium moieties, which facilitate the accumulation of the complexes in mitochondria.

(Invited) Amphiphilic Block Copolymers and Their Hybrids for Efficient Aqueous-Processed Solar Cells

Due to their low cost and high efficiency, polymer/nanocrystal hybrid solar cells have attracted much attention in recent years. Additionally, aqueous-processed solar cells are attractive because they exhibit the potential to produce clean energy via the use of nontoxic solvents. The use of water instead of toxic organic solvents during the fabrication process of these devices is capable of significantly reducing the environmental impact as well as the production cost. In aqueous-processed solar cells, hybrid solar cells employing water-soluble conjugated polymers and inorganic nanocrystals as photovoltaic materials have gained much attention. These hybrid materials take advantage of both water-soluble conjugated polymers and nanocrystals, which exhibit adjustable absorption properties through structural modification, efficient charge carrier generation, and high charge carrier mobility. Water-soluble conjugated polymers are typically homopolymers with ionic (i.e., sulfonate and phosphonate moieties) or nonionic, hydrophilic (i.e., hydroxyl and glycol moieties) side chains. Unfortunately, the use of hydrophilic side chains in these conventional water-soluble conjugated polymers adversely affected the stacking of the polymer backbone, which can lead to the deterioration of their optoelectronic properties and thus a lower power conversion efficiency in solar cells. Furthermore, these side chains may cause charge trapping when applied in the active layer, which results in the further reduction in performance In this presentation, the use of a water-soluble hybrid material consisting of amphiphilic block copolymers and cadmium telluride nanocrystals as the active layer in hybrid solar cells will be discussed. The amphiphilic block copolymers composed of poly(3-hexylthiophene) (P3HT) and poly(acrylic acid) (PAA) self-assembled into ordered nanostructured micelles which then transformed to nanowires by co-micellization with P3HT additives. Furthermore, after annealing, the hybrid materials formed an interpenetrating network. The properties of the hybrid materials and the film morphology, and how they correlate to the device performance will be discussed.

Synthesis of self-doped polyaniline bearing phosphonic acid moiety via Pd-catalyzed phosphonation of poly(2-bromoaniline)

Self-doped conducting polyaniline bearing phosphonic acid moiety was synthesized via the Pd-catalyzed phosphonation of poly(2-bromoaniline) as a key reaction.

The solid-state structures of organic salts formed by calix[4]arene dihydroxyphosphonic acid with nucleic bases cations: adeninium, cytosinium, guaninium and uracilium

Calix[4]arene dihydroxyphosphonic acid has been demonstrated to possess an interesting range of biological properties, including atypical anti-cancer activity. The robustness of calix[4]arene dihydroxyphosphonic acid and its ubiquitous dimeric motif offers perspectives for pre-defined solid state complexation with small molecules. In the current article we describe co-crystals (organic salts) of calix[4]arene dihydroxyphosphonic acid with four nucleic base cations: adeninium, cytosinium, guaninium and uracilium. A number of characteristic interactions between the components in the four co-crystals are pointed out also using the Hirshfeld surface analysis. All the four co-crystals are based on layers of calix[4]arene dimers, alternating with layers of nucleic acid molecules. Two of the reported crystal structures (cytosinium and guaninium) are 1D channel-type structures, while the two others (adeninium and uracilium) represent 2D channel-type structures. In three out of four reported structures, interactions between the cations of nucleic bases are present generating 1D chains of cations. A constant motif is that the nucleic base is present in a type of cavity formed by one aromatic ring and a phosphonic acid moiety.

Facile Synthesis, Geometry, and 2'-Substituent-Dependent in Vivo Activity of 5'-(E)- and 5'-(Z)-Vinylphosphonate-Modified siRNA Conjugates.

(E)-Vinylphosphonate ((E)-VP), a metabolically stable phosphate mimic at the 5'-end of the antisense strand, enhances the in vivo potency of siRNA. Here we describe a straightforward synthetic approach to incorporate a nucleotide carrying a vinylphosphonate (VP) moiety at the 5'-end of oligonucleotides under standard solid-phase synthesis and deprotection conditions by utilizing pivaloyloxymethyl (POM) protected VP-nucleoside phosphoramidites. The POM protection enhances scope and scalability of 5'-VP-modified oligonucleotides and, in a broader sense, the synthesis of oligonucleotides modified with phosphonate moieties. Trivalent N-acetylgalactosamine-conjugated small interfering RNA (GalNAc-siRNA) comprising (E)-geometrical isomer of VP showed improved RISC loading with robust RNAi-mediated gene silencing in mice compared to the corresponding (Z)-isomer despite similar tissue accumulation. We also obtained structural insights into why bulkier 2'-ribosugar substitutions such as 2'-O-[2-(methylamino)-2-oxoethyl] are well tolerated only when combined with 5'-(E)-VP.

Ortho-Phenyl dialkylphosphonium sulfonate compounds: two rotamers in equilibrium.

Two known and two new ortho-phenyl phosphonium-sulfonate compounds have been synthesized and analyzed in solution and in the solid state. When the phosphonium moiety bears alkyl substituents, two rotamers are in equilibrium in solution. These two rotamers have been entirely characterized and are shown to differ by the spatial arrangement of the phosphonium proton relative to the sulfonate moiety. The phosphonium proton chemical shift and the 1JPH coupling constant are characteristic values for each rotamer. The kinetic and thermodynamic constants have been determined by means of NMR and DFT studies.

Metal-Organic Frameworks Invert Molecular Reactivity: Lewis Acidic Phosphonium Zwitterions Catalyze the Aldol-Tishchenko Reaction.

The influence of metal–organic frameworks (MOFs) as additives is herein described for the reaction of n-alkyl aldehydes in the presence of methylvinylketone and triphenylphosphine. In the absence of a MOF, the expected Morita–Baylis–Hillman product, a β-hydroxy enone, is observed. In the presence of MOFs with UMCM-1 and MOF-5 topologies, the reaction is selective to Aldol-Tishchenko products, the 1 and 3 n-alkylesters of 2-alkyl-1,3-diols, which is unprecedented in organocatalysis. The (3-oxo-2-butenyl)triphenylphosphonium zwitterion, a commonly known nucleophile, is identified as the catalytic active species. This zwitterion favors nucleophilic character in solution, whereas once confined within the framework, it becomes an electrophile yielding Aldol-Tishchenko selectivity. Computational investigations reveal a structural change in the phosphonium moiety induced by the steric confinement of the framework that makes it accessible and an electrophile.