Phenazine Ring Research Articles

The pattern of bifurcated hydrogen bonds in thiourea cocrystals with diazine derivatives: experimental and quantum theoretical studies.

Cocrystals of thiourea with pyrazine N-oxide as thiourea-pyrazine N-oxide (2/1), C4H4N2O·2CH4N2S, (I), and with phenazine as thiourea-phenazine (6/7), 7C12H8N2·6CH4N2S, (II), both crystallize in the monoclinic space group P21/c. In the crystalline state, molecules of both components are linked by N-H...N hydrogen bonds. In addition, there are R22(8) hydrogen-bond synthons between thiourea molecules in both crystal structures. Furthermore, bifurcated hydrogen bonds between the -NH groups in the thiourea molecule and the N and O atoms in the N-oxide ring [in (I)], as well as the N atom in the central phenazine ring [in (II)], play a significant role in both structures. This emerging motif was thoroughly examined using quantum chemistry methods.

Opposite regulation effects of Al3+ on different types of carbon quantum dots and potential applications in information encryption.

Regulating the photoluminescence (PL) of carbon quantum dots (CQDs) through ion modification is a well-established and effective approach. Herein, we report the opposite regulation effects of Al3+ ions on the PL properties of two distinct types of CQDs (graphene quantum dots, GQDs, and nitrogen-doped carbon quantum dots of 2,3-diaminophenazine, DAP), and elucidate the underlying mechanism of the binding of Al3+ ions to different PL sites on CQDs by employing ultraviolet-visible spectroscopy, X-ray photoelectron spectroscopy, and density functional theory calculations. Specifically, Al3+ ions are primarily situated around the oxygen-containing groups, which do not impact the π-π regions of GQDs. However, Al3+ ions are preferentially adsorbed on the top of pyridine nitrogen in the phenazine rings of DAP, thus reducing the PL regions of DAP. Based on the opposite PL effects of Al3+ on GQDs and DAP, we explore potential applications of information encryption and successfully realize multi-level information encryption and decryption, which may provide new strategies for CQDs in information security.

In silico study of HASDI (high-affinity selective DNA intercalator) as a new agent capable of highly selective recognition of the DNA sequence

Cancer as an acquired genetic disease is based on changes both in the genome itself and in transcription processes. Accordingly, it is at the DNA level that it makes sense to search for and design agents capable of effective and selective anticancer action. In this study, we used an iterative approach based on a molecular dynamics simulation to design a highly selective DNA-intercalating agent called HASDI. To confirm its selective affinity to DNA, we conducted two simulation experiments: HASDI in a complex with a DNA fragment of the EBNA1 gene (it targets 16 nucleotide pairs of this gene) and HASDI in a complex with a random DNA fragment of the KCNH2 gene. The molecular dynamics simulation was carried out in the GROMACS 2019 package. The binding energy was calculated by gmx_MMPBSA 1.5.2. The further analysis was performed using the built-in utilities of GROMACS, gmx_MMPBSA and also XMGRACE and Pymol 1.8. As a result, we determined that the EBNA1-50nt/HASDI complex was stable throughout the whole simulation trajectory. HASDI, due to the presence of a linker modified depending on a specific pair of nitrogenous bases, formed an average of 32 hydrogen bonds with a sequence of 16 nucleotide pairs. Phenazine rings were stably intercalated every 2 base pairs. The root-mean-square deviation of HASDI in such a complex fluctuated around the value of 6.5 Å and had no tendency to increase. The calculated value of the binding free energy was − 235.3 ± 7.77 kcal/mol. The KCNH2-50nt/HASDI complex, as an example of the intercalation of the designed structure into a random part of the human genome, maintained the stability of its position at a level comparable to the EBNA1-50nt/HASDI complex. The phenazine rings were constantly intercalated in their original positions, and the root-mean-square deviation fluctuated around one value, although it had a tendency to chaotic changes. At the same time, this complex was characterized by 17–19 hydrogen bonds, on average, and the binding free energy was − 193.47 ± 14.09 kcal/mol. Moreover, the DNA duplex had local single-nucleotide melting in the region of the 4th linker. According to a significant decrease in the number of hydrogen bonds, a decrease in energy gain, as well as a decrease in the stability of the DNA duplex characteristic of the KCNH2-50nt/HASDI complex compared to the target EBNA1-50nt/HASDI complex, the molecule we designed can be considered a potentially selective DNA polyintercalating agent capable of relatively accurate recognition of 16 base pairs.

3,11-Diaminodibenzo[a,j]phenazine: Synthesis, Properties, and Applications to Tröger's Base-Forming Ladder Polymerization.

A new class of diamino-substituted π-extended phenazine compound was synthesized, and its photophysical properties were investigated. The U-shaped diaminophenazine displayed photoluminescence in solution with moderate quantum yield. The diamino aromatic compound was found applicable to the poly-condensation with formaldehyde to form Tröger's base ladder polymer. The obtained microporous ladder polymer features high CO2 adsorption selectivity against N2 , most likely due to the presence of basic nitrogen atoms in the phenazine rings.

Pseudomonas fluorescens Showing Antifungal Activity against Macrophomina phaseolina, a Severe Pathogenic Fungus of Soybean, Produces Phenazine as the Main Active Metabolite.

Pseudomonas fluorescens 9 and Bacillus subtilis 54, proposed as biofungicides to control Macrophomina phaseolina, a dangerous pathogen of soybean and other crops, were grown in vitro to evaluate their ability to produce metabolites with antifungal activity. The aim of the manuscript was to identify the natural compounds responsible for their antifungal activity. Only the culture filtrates of P. fluorescens 9 showed strong antifungal activity against M. phaseolina. Its organic extract contained phenazine and mesaconic acid (1 and 2), whose antifungal activity was tested against M. phaseolina, as well as Cercospora nicotianae and Colletotrichum truncatum, other pathogens of soybean; however, only compound 1 exhibited activity. The antifungal activity of compound 1 was compared to phenazine-1-carboxylic acid (PCA, 3), 2-hydroxyphenazine (2-OH P, 4), and various semisynthetic phenazine nitro derivatives in order to perform a structure–activity relationship (SAR) study. PCA and phenazine exhibited the same percentage of growth inhibition in M. phaseolina and C. truncatum, whereas PCA (3) showed lower activity against C. nicotianae than phenazine. 2-Hydroxyphenazine (4) showed no antifungal activity against M. phaseolina. The results of the SAR study showed that electron attractor (COOH and NO2) or repulsor (OH) groups significantly affect the antifungal growth, as well as their α- or β-location on the phenazine ring. Both PCA and phenazine could be proposed as biopesticides to control the soybean pathogens M. phaseolina, C. nicotianae, and C. truncatum, and these results should prompt an investigation of their large-scale production and their suitable formulation for greenhouse and field applications.

Anticancer activity, topoisomerase I inhibition, DNA ‘light switch’ behavior and molecular docking of two ruthenium complexes containing phenazine ring

Ruthenium(II) complexes containing phenazine ring have attracted attention to design as ‘molecular light switches’. In this study, we synthesized two ruthenium complexes containing phenazine ring and studied their abilities to function as DNA intercalators, DNA ‘light switches’, DNA topo I inhibitors, DNA photocleavers and potential antitumor reagents. [Ru(bpy)2(mbipz)](PF6)2 (1) (bpy = 2,2′-bipyridine, mbipz = 2-(4′-methyl-bipyridine-4-yl)-1H-imidazo[4,5-b]phenazine) exhibited off–on type DNA ‘light swtich’ behavior. DNA binding modes of the two complexes were determined as intercalation by using UV–vis spectra, emission spectra, viscosity and molecular docking experiments. DNA photocleavage experimental results showed that the two ruthenium complexes effectively cleave plasmid DNA by producing singlet oxygen. Furthermore, they displayed good topo I inhibition activities. We further found that the two complexes displayed good antitumor activities against Eca-109 cells and A549 cells. The results demonstrated that introduction of phenazine ring will be helpful to design DNA ‘light switch’ based on ruthenium complex. Communicated by Ramaswamy H. Sarma

One-Pot Synthesis of Spiro-isobenzofuran Compounds via the Sequential Condensation/Oxidation Reaction of Ninhydrin with 4-Amino-1,2-naphthoquinones/2-Amino-1,4-naphthoquinones under Mild Conditions.

A one-pot route for the synthesis of spiro-isobenzofuran compounds was developed via the condensation reaction of ninhydrin with 4-amino-1,2-naphthoquinones or 2-amino-1,4-naphthoquinones in acetic acid followed by the oxidative cleavage of the corresponding vicinal diols at room temperature. Various derivatives of spiro[benzo[g]indole-2,1′-isobenzofuran]-3,3′,4,5(1H) tetraones and spiro[benzo[f]pyrrolo[2,3-h]quinoxaline-2,1′-isobenzofuran]-3,3′(1H)-diones were synthesized in good to high yields. Moreover, further condensation of spiro[benzo[g]indole-2,1′-isobenzofuran]-3,3′,4,5(1H)-tetraones with 1,2-diamines resulted in the new spiro-isobenzofuran compounds having phenazine rings in high yields.

Structures and dynamics of DNA complexes of the desmethyl analog of the cytotoxin MLN944: Insights into activity when a methyl isn't futile.

Structure activity relationships for tricyclic-carboxamide topoisomerase II poisons indicate that cytotoxicity is enhanced by the presence of methyl, and other, groups in the position peri to the carboxamide. Linked dimers of phenazine-1-carboxamides are potent cytotoxins and one phenazine dimer, MLN944 (alternatively XR5944), has been in clinical trial. MLN944 is a template inhibitor of transcription, whereas corresponding monomers are not. Nevertheless, its cytotoxic potency is also diminished by removal of its peri methyl groups. Here, we describe NMR and molecular dynamic studies of the interaction of desmethyl MLN944 with d(ATGCAT)2 , d(TATGCATA)2 , and d(TACGCGTA)2 to investigate the influence of the nine-methyl group on the structure of MLN944 complexes. As with MLN944, the carboxamide group hydrogen bonds to the phenazine ring nitrogen, the ligand sandwiches the central GC base pairs in the major groove, and the protonated linker amines hydrogen bond primarily to the O6 atom of the guanines. Molecular dynamics studies reveal that the linker exists in multiple conformations, none of which produce an ideal set of hydrogen bonds. In distinction, however, the carboxamide-to-phenazine ring nitrogen hydrogen bond is weaker, the overall helix winding is less and the NMR resonances are broader in the desmethyl complexes. Exchange between free and complexed DNA, quantified using two-dimensional NOESY spectra, is faster for the desmethyl MLN944 complexes than for MLN944 complexes. Overall, the data suggest that desmethyl MLN944 DNA complexes are "looser" and more unwound at the binding site, leading to faster dissociation rates, which could account for the diminished efficacy of the desmethyl analog.

Influence of Acidity and Oxidant Concentration on the Nanostructures and Electrochemical Performance of Polyaniline during Fast Microwave-Assisted Chemical Polymerization.

Polyaniline (PANI), a typical conducting polymer, has attracted great interest as an electrode material. A series of PANIs were prepared through fast microwave-assisted chemical oxidative polymerization with varying HCl and APS concentrations here. It was found that the microwave synthesized PANIs had ~4 times higher for the yields and 7~10 times higher for the electrical conductivity in comparison to PANI samples prepared using conventional method. PANI nanosheets could easily be fabricated in weakly acidic solution due to their oligomeric structure, which contained flat phenazine rings. By contrast, linear PANI chains produced in highly acidic solutions formed nanofibers. The APS concentration did not significantly affect the molecular structures of PANIs under the conditions here. However, increasing the concentration of APS produced nanofibers with shorter branches, which may be due to secondary nucleation during chain growth resulting from increases in active initiation centers. The electrical conductivity and electrochemical performance of PANIs were both improved with increasing HCl and APS concentrations. Improvements due to increases in HCl concentration may be attributed to additions in conjugation length and enrichment of doping levels, while improvements due to increases in APS concentration could be attributed to the increased crystallinity of PANI, which facilitates ion transport.

Effect of introducing amino acids into phenazine-1-carboxylic acid on phloem mobility

To develop new phenazine carboxylic acid derivatives with better phloem mobility, five novel 7-amino acid substituted phenazine-1-carboxylic acids were synthesised by introducing amino acids into PCA at the 7-position. The phloem mobility experiments in Ricinus communis seedlings showed that retaining the carboxyl group of PCA and conjugating amino acids to its phenazine ring can also endow PCA with phloem mobility. Comparing our previous research, we found the amino acids substituted at 7-position on phenazine ring of PCA could clearly enhance the phloem mobility of PCA than that of amino acids conjugated with carboxyl group. Especially, the phloem transport concentration of the compound 7-L-isoleucine substituted PCA (7d) was 21 times higher than PCA-L-isoleucine conjugate (8d). These data suggest that the introduction of amino acids at different structural sites on the phenazine ring could effectively enhance the phloem mobility of PCA and it is worth a further study.

Imine-Rich Poly( o -phenylenediamine) as High-Capacity Trifunctional Organic Electrode for Alkali-Ion Batteries

Alkali-ion batteries, including potassium-ion batteries, lithium-ion batteries, and sodium-ion batteries are important energy storage devices; however, with the cation size increased, there exists ...

Oxidative Polymerization of 3,6-Phenylenediamino-2,5-dichlorobenzoquinone

The oxidative polymerization of 3,6-phenylenediamino-2,5-dichlorobenzoquinone is studied for the first time, and the monomer is shown to exhibit a high reactivity in this process. The rate of its polymerization is much higher than that of aniline and 3,6-dianiline-2,5-dichlorobenzoquinone, and the induction period of oxidation is absent. The kinetic features of the oxidative polymerization of 3,6-phenylenediamino-2,5-dichlorobenzoquinone are investigated by measuring variation in the redox potential of the reaction mixture in the course of time. It is found that the kinetic curves of 3,6-phenylenediamino-2,5-dichlorobenzoquinone polymerization do not follow the S-shaped pattern typical of aniline polymerization. The mechanism of polymerization proceeding through a number of successive tautomeric rearrangements is advanced. The structure of the polymers is studied by FTIR and X-ray photoelectron spectroscopy. During the reaction of oxidative polymerization, cyclization processes occur to form phenazine and phenoxazine rings which give rise to a ladder polyconjugated polymer. The effect of reaction conditions, such as the concentration of reagents, their ratio, and the pH of the reaction medium, on the process is investigated.

Exploration on the microwave‐assisted synthesis and formation mechanism of polyaniline nanostructures synthesized in different hydrochloric acid concentrations

ABSTRACTUnder microwave‐assisted synthesis, polyaniline (PANI) products with multiple nanostructures were synthesized by the oxidative polymerization of aniline and ammonium peroxodisulfate in the different concentrations of hydrochloric acid solutions. The structural analysis of PANI using FTIR, UV, and XPS indicated that phenazine‐like oligomers were produced in acid‐free and low acidic systems. Moreover, long linear PANI chains were obtained in the presence of highly acidic solutions. The morphology of PANI observed by SEM and TEM showed that nanoscale structures, including stacked sheets, nanotubes, branched nanofibers, and uniform nanofibers, occurred respectively in acid‐free solution, low acidity, medium and high acidity systems, effectively regulating by acidity. The formation mechanism of PANI nanostructures was explored here. The sheets were formed by the oligomers containing flat phenazine rings that can be stacked together with strong π–π interactions. Furthermore, nanotubes were fabricated by the self‐curling of thin sheets consisted of phenazine‐like oligomers with numerous linear units in the chains. The nanofibers are supposed to form by the linear PANI chains and the secondary growth during aniline polymerization caused the branch formation on the nanofibers. All results indicate that acidity, rather than microwave assistance, is the critical factor that determines the polymerization mechanism and the final nanostructure. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017, 55, 3357–3369

ChemInform Abstract: Base‐Promoted Cyclization of 3‐Alkynylquinoxaline‐2‐carbonitriles with CH‐Acids: A New Method for the Phenazine Ring Synthesis.

AbstractThe formation of the red‐colored 2,3‐disubstituted phenazin‐1‐amine derivatives is possible under mild conditions and the substituents at position 2 allow a further modification of the heterocyclic system.

Base-promoted cyclization of 3-alkynylquinoxaline-2-carbonitriles with CH-acids: a new method for the phenazine ring synthesis

3-Alkynylquinoxaline-2-carbonitriles were directly transformed into 2,3-disubstituted phenazin-1-amines by treating with a CH-acid (diethylmalonate, ethyl cyanoacetate, malononitrile, 2-tosylacetonitrile, 2-(1-methyl-1H-benzo[d]imidazol-2-yl)acetonitrile, nitromethane) and t-BuOK in THF or DMSO. A new cascade process includes nucleophilic addition of a CH-acid carbanion to the CC bond of 3-alkynylquinoxaline-2-carbonitrile, 6-exo-dig cyclization of the intermediate allyl carbanion with the formation of 2,2-disubstituted 1-imino-1,2-dihydrophenazine and its aromatization via elimination of the C(2)-substituent. Several secondary reactions were also disclosed and discussed.

Supramolecular polyaniline hydrogel as a support for urease

Supramolecular hydrogels of conducting polymers are successfully used in bioelectrochemistry because of their mechanical and swelling properties of gels added to the specific electron transport properties of conducting polymers. We have studied polyaniline-poly(styrene sulfonate) (PANI–PSS) hydrogel as a substrate for the urease. The hydrogels were synthesized at pH=0 and pH=5. PANI–PSS hydrogel is a supramolecular self-assembly material consisting of positively-charged PANI chains and negatively-charged PSS chains. The hydrogel was studied by cyclic voltammetry, infrared and Raman spectroscopy and Scanning Electron Microscopy (SEM). Raman spectra revealed presence of phenazine rings in the hydrogel structure. Phenazine rings form covalent cross-linkers contributing to the hydrogel mechanical stability. The covalent cross-linkers influence the cyclic voltammetry responses of the hydrogel in acidic media. We tested the activity of urease immobilized in the PANI–PSS hydrogel by the physical adsorption or by the covalent bonding with the carbodiimide reaction. The enzyme immobilized in hydrogels prepared at higher pH value reveals significantly higher sensitivity. The method of the enzyme immobilization has smaller impact on the sensitivity. All hydrogel sensors reveal largely higher sensitivity to urea comparing to urease immobilized in the typical electrochemically deposited PANI films. The sensitivity of urease covalently bond to the hydrogel obtained at pH=5 was as high as 1693μA/(moldm3). The sensor response was linear in the urea concentration range from 10−4 to 7×10−2mol/dm3.

Synthesis and corrosion protection properties of poly(o-phenylenediamine) nanofibers

The present study shows a novel method for the synthesis of uniformly-shaped poly(othophenylediamine) (PoPD) nanofibers by chemical oxidative polymerization method for application towards smart corrosion resistance coatings. Transmission Electron Microscopy (TEM) and Scanning Electron Microscopy (SEM) studies confirm morphology of PoPD with three dimensional (3D) networked dendritic superstructures having average diameter of 50–70nm and several hundred meters of length. UV–vis and FTIR spectral results shows the formation of PoPD nanofibers containing phenazine ring ladder-structure with benzenoid and quinoid imine units. Thermogravimetric analyses (TGA) of PoPD nanofibers possess good thermal stability. The anti-corrosion behavior of PoPD nanofibers on 316L SS was investigated in 3.5% NaCl solution using potentiodynamic polarization and electrochemical impedance spectroscopic (EIS) measurements. The PoPD coated 316L SS exhibits higher corrosion potential when compared to uncoated specimen. EIS studies, clearly ascertain that PoPD nanofiber coatings exhibits excellent potential barrier to protect the 316L SS against corrosion in 3.5% NaCl.

The stabilization of charged states at phenazine-like units in polyaniline under p-doping: an in situ ATR-FTIR spectroelectrochemical study

The structure and stabilization of charged states during p-doping of polyaniline (PANI) were studied by in situ ATR-FTIR spectroelectrochemistry. The role of phenazine-like units in several copolymers of aniline and a phenazine derivative (3,7-diamino-5-phenylphenazinium chloride, phenosafranine) was investigated by spectroelectrochemistry. PANI and three copolymers with different aniline to phenosafranine ratio were electrochemically prepared. FTIR spectra of as-prepared polymers as well as in situ FTIR spectra during the oxidation of the polymers give evidence of the presence of phenazine-like units in the structure of electrochemically prepared PANI, as shown by vibrations of the phenazine rings. New bands corresponding to the in-plane and out-of-plane C-H vibration of 1,2,4-trisubstituted benzene nuclei in the phenazine skeleton are found at 1033, 957, 880, 766 and 681 cm(-1). The potential dependence of IR bands observed during oxidation of the polymers was compared to that of the ESR intensity and the absorption data and points to the diamagnetic species like π-dimers formed at higher oxidation level of PANI. This charged state is shown to be fixed at the link of the phenazine-like units with the linear segments of PANI.

One-pot three-component synthesis of quinoxaline and phenazine ring systems using Fischer carbene complexes.

One-pot three-component coupling of o-alkynylheteroaryl carbonyl derivatives with Fischer carbene complexes and dienophiles leading to the synthesis of quinoxaline and phenazine ring systems has been investigated. This involves the generation of furo[3,4-b]pyrazine and furo[3,4-b]quinoxaline as transient intermediates, which were trapped with Diels–Alder dienophiles. This is the first report on furo[3,4-b]pyrazine intermediates.

Synthesis and Characterization of Polyacriflavine

New functional polymeric, semiconducting materials were synthesized by chemical oxidative polymerization of acriflavine hydrochloride in aqueous solution at room temperature, using ammonium peroxydisulfate as an oxidant. Polymerization products were characterized by gelpermeation chromatography (GPC), FTIR spectroscopy, scanning electron microscopy (SEM) and conductivity measurements. The influence of the oxidant/monomer molar ratio on the molecular structure, molecular weight distribution and the electrical conductivity of polyacriflavines was studied. Molecular weights approach a maximum value of ~20000. The polyacriflavine prepared by using oxidant/monomer molar ratio 1.25 shows the conductivity of 2.8 × 10–7 S cm–1. New substitution pattern shown by FTIR spectroscopic analysis combined with MNDO-PM3 semiempirical quantum chemical calculations revealed N─C2 coupling reactions as dominant. The formation of phenazine rings in ladder structured polymerization products was observed by FTIR spectroscopy. The existence of a certain polyacriflavine crystalline structure was suggested from the SEM micrographs.