The present study focused on the relationship between primary friction stir welding process parameters and varied types of weld-defect discovered in aluminum 2219-T6 friction stir butt-welds of thick plates, meanwhile, the weld-defect forming mechanisms were investigated. Besides a series of optical metallographic examinations for friction stir butt welds, multiple non-destructive testing methods including X-ray detection, ultrasonic C-scan testing, ultrasonic phased array inspection and fluorescent penetrating fluid inspection were successfully used aiming to examine the shapes and existence locations of different weld-defects. In addition, precipitated Al2Cu phase coarsening particles were found around a ‘kissing-bond’ defect within the weld stirred nugget zone by means of scanning electron microscope and energy dispersive X-ray analysis. On the basis of volume conservation law in material plastic deformation, a simple empirical criterion for estimating the existence of inner material-loss defects was proposed. Defect-free butt joints were obtained after process optimization of friction stir welding for aluminum 2219-T6 plates in 17–20mm thickness. Process experiments proved that besides of tool rotation speed and travel speed, more other appropriate process parameter variables played important roles at the formation of high-quality friction stir welds, such as tool-shoulder target depth, spindle tilt angle, and fixture clamping conditions on the work-pieces. Furthermore, the nonlinear correlation between weld tensile strengths and weld crack-like root-flaws of different lengths was briefly investigated.