Overgrowing demand for sustainable energy sources and environmental remediation has driven extensive research in the field of photocatalysis. This study presents a hydrothermal synthesis of a novel MFe2O4 (M: Cu, Ni)/SnS2 magnetic core-shell heterostructure. The engineered heterostructure combines the unique properties of MFe2O4 (M: Cu, Ni) magnetic crystal as a core with SnS2 nanosheets as a shell, aiming to exploit type-2 heterojunction properties to improve effects for improved photocatalytic performance. The structural chemistry, phase formation, and crystal orientation of the prepared material are investigated using various analytical techniques, including X-ray diffraction (XRD), transmission electron microscopy (TEM), Raman, and FTIR Spectroscopy. FE-SEM analysis reveals a well-defined core-shell morphology with intimate interfaces between MFe2O4 (M: Cu, Ni) crystals and SnS2 nanosheets. Photocatalytic efficiency is assessed through the industrial dye degradation process. The influence of the heterostructure's structural features on the photocatalytic activity is explored through density function theory, emphasizing the role of the core-shell interface and the magnetic properties of MFe2O4 (M: Cu, Ni) cores. The chemistry between the magnetic core and the shell in the heterostructure is demonstrated to be crucial for optimizing charge carrier dynamics and promoting surface reactions. Photocatalytic H2 generation under artificial simulated sunlight irradiation in the presence of MFe2O4 (M: Cu, Ni)/SnS2 core-shell heterostructure is demonstrated. This study not only presents a novel MFe2O4 (M: Cu, Ni)/SnS2 heterostructure for photocatalytic H2 generation but also provides valuable insights into the intricate relationship between structural chemistry and photocatalytic efficiency. The engineered heterostructure shows promising potential for applications in sustainable energy production and environmental remediation, contributing to the ongoing efforts towards a cleaner and more sustainable future.