We aim at contributing to the reliability of the phase scintillation index on Global Navigation Satellite System (GNSS) signals at high-latitude. To the scope, we leverage on a recently introduced detrending scheme based on the signal decomposition provided by the fast iterative filtering (FIF) technique. This detrending scheme has been demonstrated to enable a fine-tuning of the cutoff frequency for phase detrending used in the phase scintillation index definition. In a single case study based on Galileo data taken by a GNSS ionospheric scintillation monitor receiver (ISMR) in Concordia Station (Antarctica), we investigate how to step ahead of the cutoff frequency optimization. We show how the FIF-based detrending allows deriving adaptive cutoff frequencies, whose value changes minute-by-minute. They are found to range between 0.4 and 1.2 Hz. This allows better accounting for diffractive effects in phase scintillation index calculation and provides a GNSS-based estimation of the relative velocity between satellite and ionospheric irregularities.