Intensive aquaculture practices have exacerbated the outbreak of diseases, notably Vibriosis caused by Vibrio alginolyticus (Va). Bacteriophage (Phage) therapy is regarded as a promising alternative to antibiotics. Herein, a Va phage named vB_Va_ZX-1, isolated from the sewage, was shown as a typical morphology of a short-tailed phage by transmission electron microscopy (TEM). The biological characteristics experiment revealed that vB_Va_ZX-1 exhibited a latency period of 15 min, a burst size of 81 PFU/cell, and a broad stability across diverse environments. In addition, genomic bioinformatics analysis revealed that vB_Va_ZX-1 is a novel phage belonging to the genus Kaohsiungvirus within the Autographiviridae family. Its genome consists of a double-stranded DNA spanning 43,533-bp and exhibits a GC content of 43.42%. A total of forty-seven hypothetical open reading frames in vB_Va_ZX-1 genome were predicted, encoding proteins involved in DNA replication, metabolism, packaging, structural components, and host lysis. Notably, no antibiotic resistance genes or virulence factors were detected. Furthermore, in vivo assessment demonstrated that phage treatment protected Chinese mitten crab larvae from Vp24 infection, with a survival rate of up to 90% after 7 days, compared to the rapid mortality of untreated controls within 3 days. Additionally, vB_Va_ZX-1, as a natural bio-antimicrobial agent, significantly reduced the quantity of Vibrio alginolyticus by 90% compared to the control when used as a spray on the surface of salmon slices. In conclusion, vB_Va_ZX-1 holds potential as a novel antimicrobial agent.