Peromyscus Polionotus Research Articles

Evolution of a novel adrenal cell type that promotes parental care.

Cell types with specialized functions fundamentally regulate animal behaviour, and yet the genetic mechanisms that underlie the emergence of novel cell types and their consequences for behaviour are not well understood1. Here we show that the monogamous oldfield mouse (Peromyscus polionotus) has recently evolved a novel cell type in the adrenal gland that expresses the enzyme AKR1C18, which converts progesterone into 20α-hydroxyprogesterone. We then demonstrate that 20α-hydroxyprogesterone is more abundant in oldfield mice, where it induces monogamous-typical parental behaviours, than in the closely related promiscuous deer mice (Peromyscus maniculatus). Using quantitative trait locus mapping in a cross between these species, we ultimately find interspecific genetic variation that drives expression of the nuclear protein GADD45A and the glycoprotein tenascin N, which contribute to the emergence and function of this cell type in oldfield mice. Our results provide an example by which the recent evolution of a new cell type in a gland outside the brain contributes to the evolution of social behaviour.

Post-mating parental behavior trajectories differ across four species of deer mice.

Among species, parental behaviors vary in their magnitude, onset relative to reproduction, and sexual dimorphism. In deer mice (genus Peromyscus), while most species are promiscuous with low paternal care, monogamy and biparental care have evolved at least twice under different ecological conditions. Here, in a common laboratory setting, we monitored parental behaviors of males and females of two promiscuous (eastern deer mouse P. maniculatus and white-footed mouse P. leucopus) and two monogamous (oldfield mouse P. polionotus and California mouse P. californicus) species from before mating to after giving birth. In the promiscuous species, females showed parental behaviors largely after parturition, while males showed little parental care. In contrast, both sexes of monogamous species performed parental behaviors. However, while oldfield mice began to display parental behaviors before mating, California mice showed robust parental care behaviors only postpartum. These different parental-care trajectories in the two monogamous species align with their socioecology. Oldfield mice have overlapping home ranges with relatives, so infants they encounter, even if not their own, are likely to be closely related. By contrast, California mice disperse longer distances into exclusive territories with possibly unrelated neighbors, decreasing the inclusive fitness benefits of caring for unfamiliar pups before parenthood. Together, we find that patterns of parental behaviors in Peromyscus are consistent with predictions from inclusive fitness theory.

Interspecific variation in cooperative burrowing behavior by Peromyscus mice.

Animals often adjust their behavior according to social context, but the capacity for such behavioral flexibility can vary among species. Here, we test for interspecific variation in behavioral flexibility by comparing burrowing behavior across three species of deer mice (genus Peromyscus) with divergent social systems, ranging from promiscuous (Peromyscus leucopus and Peromyscus maniculatus) to monogamous (Peromyscus polionotus). First, we compared the burrows built by individual mice to those built by pairs of mice in all three species. Although burrow length did not differ in P. leucopus or P. maniculatus, we found that P. polionotus pairs cooperatively constructed burrows that were nearly twice as long as those built by individuals and that opposite‐sex pairs dug longer burrows than same‐sex pairs. Second, to directly observe cooperative digging behavior in P. polionotus, we designed a burrowing assay in which we could video‐record active digging in narrow, transparent enclosures. Using this novel assay, we found, unexpectedly, that neither males nor females spent more time digging with an opposite‐sex partner. Rather, we demonstrate that opposite‐sex pairs are more socially cohesive and thus more efficient digging partners than same‐sex pairs. Together, our study demonstrates how social context can modulate innate behavior and offers insight into how differences in behavioral flexibility may evolve among closely related species.

An enhancer of Agouti contributes to parallel evolution of cryptically colored beach mice

Identifying the genetic basis of repeatedly evolved traits provides a way to reconstruct their evolutionary history and ultimately investigate the predictability of evolution. Here, we focus on the oldfield mouse (Peromyscus polionotus), which occurs in the southeastern United States, where it exhibits considerable color variation. Dorsal coats range from dark brown in mainland mice to near white in mice inhabiting sandy beaches; this light pelage has evolved independently on Florida's Gulf and Atlantic coasts as camouflage from predators. To facilitate genomic analyses, we first generated a chromosome-level genome assembly of Peromyscus polionotus subgriseus. Next, in a uniquely variable mainland population (Peromyscus polionotus albifrons), we scored 23 pigment traits and performed targeted resequencing in 168 mice. We find that pigment variation is strongly associated with an ∼2-kb region ∼5 kb upstream of the Agouti signaling protein coding region. Using a reporter-gene assay, we demonstrate that this regulatory region contains an enhancer that drives expression in the dermis of mouse embryos during the establishment of pigment prepatterns. Moreover, extended tracts of homozygosity in this Agouti region indicate that the light allele experienced recent and strong positive selection. Notably, this same light allele appears fixed in both Gulf and Atlantic coast beach mice, despite these populations being separated by >1,000 km. Together, our results suggest that this identified Agouti enhancer allele has been maintained in mainland populations as standing genetic variation and from there, has spread to and been selected in two independent beach mouse lineages, thereby facilitating their rapid and parallel evolution.

Fire exclusion and fire return interval affect small mammal populations in longleaf pine forests

Longleaf pine (Pinus palustris) forests are among the most fire-dependent forest types in the world and once dominated much of the southeastern United States. Loss and fragmentation of longleaf pine shrank its distribution to approximately 4% of its historic range; as a result, longleaf pine forests currently receive much conservation and restoration emphasis. In all cases, this emphasis includes prescribed fire. Prescribed fires promote herbaceous understories which maintains habitat for some small mammals, but fires can also result in temporary declines of small mammal populations. Therefore, short return intervals may not allow small mammal populations to recover between fires, and long return intervals may result in declining habitat quality and reduced small mammal abundance. During the first phase of our research, we studied the long-term influence of prescribed fire on small mammals. We annually estimated small mammal abundance and species richness during 2001 – 2014 in eight longleaf pine-dominated plots in southwestern Georgia, USA. Plots were either biennially burned (reference) or had fire excluded during the study. Small mammal species richness was similar in fire-excluded and reference sites. Overall small mammal abundance was greatest in reference plots. Five species were captured with sufficient frequency to justify species-specific analyses. Of these, three (hispid cotton rats, Sigmodon hispidus; oldfield mice, Peromyscus polionotis; and house mice, Mus musculus) were more abundant in reference plots. For the second phase of our research, we reintroduced fire in half of the fire excluded plots (burned during 2015, 2016, and 2017) and began sampling small mammals in three additional plots that were burned annually since 2003. We collected data during 2017 and 2018 for this phase of the research to evaluate small mammal response to four prescribed-fire return intervals (annual growing season burns since 2003, biennial burns since 2001 (reference), fire excluded since 2001, and fire excluded since 2001 and then burned during 2015, 2016, and 2017). Small mammal species richness was not affected by burn interval. Cotton rat abundance was greater in reference plots than in other treatments, whereas cotton mice (Peromyscus gossypinus) and oldfield mice were most abundant in the annually burned treatment. Three prescribed fires occurred in fire reintroduced plots prior to sampling, but these fires were insufficient to restore small mammal abundance to that of annually or biennially burned plots. Our work provides further evidence that fire is important for maintaining habitat for some small mammals and that time between fires has a species-specific effect on small mammal abundances. Thus, manipulating fire return interval is a promising tool for managing relative abundance of small mammals and likely other wildlife.

Changes in native small mammal populations with removal of invasive ant

Abstract Efforts to remove invasive species may benefit native species, but the effects can be complex and unpredictable. Thus, studies of invasive-species removal provide important information for guiding management and providing insight about variation in post-removal impacts within the community. Using southern pine-grassland ecosystems as a model system, we hypothesized that removal of the long-established red-imported fire ant (Solenopsis invicta, hereafter RIFA) would positively influence altricial Peromyscus species, due to increased survival of young in the nest and thus increased recruitment to the population, but would not impact semi-precocial hispid cotton rats (Sigmodon hispidus), which are mobile more quickly after birth and thus at less risk of depredation by RIFA. We compared small mammal populations on sites treated with a granular insecticide (Extinguish Plus) to remove RIFA in southwestern Georgia, United States, from April 2018 to December 2019. As expected, we detected no difference in cotton rat recruitment. However, contrary to our prediction, the same was true for cotton mice (Peromyscus gossypinus) and oldfield mice (Peromyscus polionotus). We found RIFA removal increased survival both of cotton rats and cotton mice, increasing average population rate of change (λ) on treated sites during the study period. In contrast, we observed lower survival of oldfield mice, with similar λ estimates on treated and untreated sites, but low sample sizes were problematic for this species. Our results show that removal of invasive species can have positive impacts for native species, but both the magnitude of RIFA effects on small mammals and mechanisms by which impacts occur are complex.

Supporting habitat conservation with automated change detection in Google Earth Engine.

A significant limitation in biodiversity conservation has been the effective implementation of laws and regulations that protect species' habitats from degradation. Flexible, efficient, and effective monitoring and enforcement methods are needed to help conservation policies realize their full benefit. As remote sensing data become more numerous and accessible, they can be used to identify and quantify land-cover changes and habitat loss. However, these data remain underused for systematic conservation monitoring in part because of a lack of simple tools. We adapted 2 algorithms that automatically identify differences between pairs of images. We used free, publicly available satellite data to evaluate their ability to rapidly detect land-cover changes in a variety of land-cover types. We compared algorithm predictions with ground-truthed results at 100 sites of known change in the United States. We also compared algorithm predictions to manually created polygons delineating anthropogenic change in 4 case studies involving imperiled species' habitat: oil and gas development in the range of the Greater Sage Grouse (Centrocercus urophasianus); sand mining operations in the range of the dunes sagebrush lizard (Sceloporus arenicolus); loss of Piping Plover (Charadrius melodus) coastal habitat after Hurricane Michael (2018); and residential development in St. Andrew beach mouse (Peromyscus polionotus peninsularis) habitat. Both algorithms effectively discriminated between pixels corresponding to land-cover change and unchanged pixels as indicated by area under a receiver operating characteristic curve >0.90. The algorithm that was most effective differed among the case-study habitat types, and both effectively delineated habitat loss as indicated by low omission (min. = 0.0) and commission (min. = 0.0) rates, and moderate polygon overlap (max. = 47%). Our results showed how these algorithms can be used to help close the implementation gap of monitoring and enforcement in biodiversity conservation. We provide a free online tool that can be used to run these analyses (https://conservationist.io/habitatpatrol).

Strategic Habitat Conservation for Beach Mice: Estimating Management Scenario Efficiencies

ABSTRACTThe Perdido Key beach mouse (Peromyscus polionotus trissyllepsis), Choctawhatchee beach mouse (P. p. allophrys), and St. Andrew beach mouse (P. p. peninsularis) are 3 federally endangered subspecies that inhabit coastal dunes of Alabama and Florida, USA. Conservation opportunities for these subspecies are limited and costly. Consequently, well‐targeted efforts are required to achieve their downlisting criteria. To aid the development of targeted management scenarios that are designed to achieve downlisting criteria, we developed a Bayesian network model that uses habitat characteristics to predict the probability of beach mouse presence at a 30‐m resolution across a portion of the Florida Panhandle. We then designed alternative management scenarios for a variety of habitat conditions for coastal dunes. Finally, we estimated how much area is needed to achieve the established downlisting criterion (i.e., habitat objective) and the amount of effort needed to achieve the habitat objective (i.e., management efficiency). The results suggest that after 7 years of post‐storm recolonization, habitat objectives were met for Perdido Key (within its Florida critical habitat) and Choctawhatchee beach mice. The St. Andrew beach mouse required 5.14 km2 of additional critical habitat to be protected and occupied. The St. Andrew beach mouse habitat objective might be achieved by first restoring protected critical habitat to good dune conditions and then protecting or restoring the unprotected critical habitat with the highest predicted probability of beach mouse presence. This scenario provided a 28% increase in management efficiency compared to a scenario that randomly protected or restored undeveloped unprotected critical habitat. In total, when coupled with established downlisting criteria, these quantitative and spatial decision support tools could provide insight into how much habitat is available, how much more is needed, and targeted conservation or restoration efforts that might efficiently achieve habitat objectives. © 2020 The Wildlife Society.

Using genomic resources for linkage analysis in Peromyscus with an application for characterizing Dominant Spot

BackgroundPeromyscus are the most common mammalian species in North America and are widely used in both laboratory and field studies. The deer mouse, P. maniculatus and the old-field mouse, P. polionotus, are closely related and can generate viable and fertile hybrid offspring. The ability to generate hybrid offspring, coupled with developing genomic resources, enables researchers to conduct linkage analysis studies to identify genomic loci associated with specific traits.ResultsWe used available genomic data to identify DNA polymorphisms between P. maniculatus and P. polionotus and used the polymorphic data to identify the range of genetic complexity that underlies physiological and behavioral differences between the species, including cholesterol metabolism and genes associated with autism. In addition, we used the polymorphic data to conduct a candidate gene linkage analysis for the Dominant spot trait and determined that Dominant spot is linked to a region of chromosome 20 that contains a strong candidate gene, Sox10. During the linkage analysis, we found that the spot size varied quantitively in affected Peromyscus based on genetic background.ConclusionsThe expanding genomic resources for Peromyscus facilitate their use in linkage analysis studies, enabling the identification of loci associated with specific traits. More specifically, we have linked a coat color spotting phenotype, Dominant spot, with Sox10, a member the neural crest gene regulatory network, and that there are likely two genetic modifiers that interact with Dominant spot. These results establish Peromyscus as a model system for identifying new alleles of the neural crest gene regulatory network.

Accounting for heterogeneity in false‐positive detection rate in southeastern beach mouse habitat occupancy models

AbstractHabitat occupancy models, designed to deal with non‐detection of a target species in occupied sites, have been expanded to allow for false‐positive detections when species are mistakenly detected in unoccupied sites. When a subset of the data are unambiguous detections, such occupancy models can produce reliable results. However, if not properly accounted for, heterogeneity in the rate of false‐positive detection between sites may bias estimates of habitat occupancy. We studied habitat occupancy of the southeastern beach mouse (Peromyscus polionotus niveiventris), a species along Florida's Atlantic coast that is threatened due to the reduction of its core range by over 79% since 1950. Southeastern beach mice were detected based on their footprints in track tubes, but because of co‐occurrence of the cotton mouse (Peromyscus gossypinus) with overlapping footprint size, we had to allow for possible false‐positive detections. Differences in the relative abundance of these two species between habitats may have resulted in heterogeneity in the false‐positive rate. By combining uncertain (track tube) and certain (live capture) detection methods, we were able to use covariates to account for heterogeneity in false‐positive detection rates between habitats. Southeastern beach mouse habitat occupancy was higher in coastal dune and strand habitat than in coastal scrub or interior scrub habitats. The rate of false‐positive detections was much higher in coastal scrub habitat than in coastal dune and strand habitat or interior scrub habitat, reinforcing the need for methods that accommodate heterogeneity in the rate of false positives to reduce bias in estimates of habitat occupancy. Using simulations, we show that heterogeneity in the false‐positive detection rate leads to bias in habitat occupancy estimates unless properly accounted for. We also discuss how differences in relative abundance between the target species and a confusing species can directly impact the heterogeneity of false‐positive detections.

A high methyl donor diet affects physiology and behavior in Peromyscus polionotus

Folic acid and other dietary methyl donors are widely supplemented due to their ability to prevent neural tube defects. Dietary methyl donors are also added to other consumables such as energy drinks due to energy-promoting attributes and other perceived benefits. However, there is mounting evidence that indicates developmental exposure to high levels of dietary methyl donors may have deleterious effects. We assessed whether behavior was affected in the social North American rodent species Peromyscus polionotus exposed to a diet enriched with folic acid, Vitamin B12, choline, and betaine/trimethylglycine(TMG). P. polionotus (PO) animals are very social and exhibit little repetitive behavior, particularly compared to their sister species, P. maniculatus. We assayed the effects of dietary methyl-donor supplementation on anxiety-like repetitive and social behaviors by testing young adult animals for novel cage behavior and in social interaction tests. Animals of both sexes exposed to the diet had increased repetitive behaviors and reduced social interactions. Males exposed to the diet became more aggressive compared to their control counterparts. Since methyl-diet animals were larger than control animals, DEXA scans and hormone analyses were performed. Animals exposed to the diet had increased body fat percentages and experienced hormonal changes typically associated with excess fat storage and anxiety-like behavior changes. Therefore, these data suggest the wide use of these dietary supplements makes further investigation imperative.

Using wave runup modeling to inform coastal species management: An example application for sea turtle nest relocation

The inundation of foreshore and backshore coastal environments caused by wave runup or groundwater intrusion can be extremely detrimental for beach-dwelling organisms. For beach-nesting species, whose eggs require sufficient gas exchange with the surrounding environment for proper embryonic development, inundation for prolonged periods can result in embryonic mortality. Management strategies such as the relocation of nests high on the beach to avoid wave action have been applied for some species, though this strategy may result in unnecessary nest manipulation. To improve the identification of beach locations potentially exposed to inundation caused by wave wash-over which may require management action, wave runup models were tested in Fort Morgan, Alabama, USA for the 2016 sea turtle nesting season. The potential exposure of sea turtle nesting sites to wave wash-over was determined by comparing observed nest elevations to the predicted combined elevation of wave runup, tide, and surge (i.e., total water level). Total water level was calculated using three different definitions of beach slope: foreshore, nest, and dune-to-water (DTW), and two LiDAR-derived elevation estimates: the most recent survey from 2016 and a time-averaged digital elevation model (DEM). Models using the time-averaged DEM performed as well as, or better than, those using the 2016 LiDAR survey in the majority of comparisons. Wash-over state was correctly identified for up to 83.3% of sites when using nest slope in the wave runup calculation. However, DTW slope performed the best when predicting the wash-over frequency of a site. Mapping of the predicted 98th percentile of wave runup indicated that only 11.2% of nesting sites were exposed to wave wash-over, in contrast to the 21.3% of nests which were relocated. Wave runup models have not previously been used to inform sea turtle conservation actions; however, it holds promise for improved targeted management interventions and can assist other species (e.g., shorebirds, beach mice), which rely on dry beach habitat for nesting, feeding, and migratory rest stops. Wave runup models can also be used to investigate past storm events, forecast approaching storm impacts, and supplement sea level rise scenarios for coastal species management at multiple spatial scales.

Differentiating Footprints of Sympatric Rodents in Coastal Dune Communities: Implications for Imperiled Beach Mice

AbstractIdentifying techniques for conducting frequent, effective, and inexpensive monitoring of small mammals can be challenging. Traditional approaches such as livetrapping can be laborious, expensive, detrimental to animal health, and ineffective. Passive approaches such as tracking (e.g., from tracks on the ground or footprints collected at a tracking station) have been shown to lessen those burdens, but a problem with tracking, particularly for rodents, is the uncertainty in identifying species from footprints. To address the need for a more accurate method of identifying small mammal tracks, we measured footprints from live-captured rodents and developed a classification tree for distinguishing between subspecies and species using footprint widths treated as having known or unknown identification. We captured rodents within or near the coastal dunes of Florida and Alabama with a focus on areas occupied by threatened and endangered beach mice Peromyscus polionotus subspp., whose populations warrant regular monitoring but whose tracks are not easily distinguished from those of some sympatric species. We measured 6,996 front and hind footprints from 540 individuals across eight species. The overall accuracy of our classification tree was 82.6% and we achieved this using only the front footprint width. Footprint width cutoffs for species identification were < 5.5 mm for house mice Mus musculus, 5.5–6.7 mm for beach mice, and 6.7–8.3 mm for cotton mice Peromyscus gossypinus. We were most successful in confirming the identity of beach mice: we correctly classified approximately 94% of beach mice, while we misclassified fewer than 6% as house mice and fewer than 1% as cotton mice. When we input a beach mouse individual into the classification tree as of an unknown species, we correctly identified 78.1% of individuals as beach mice from their tracks, and most incorrect identifications were of house mouse tracks. Our study demonstrates that researchers can identify sympatric rodent species in coastal dune communities from tracks using quantitative classification based on footprint width. Accurate identification of beach mice or other imperiled species from tracks has important management implications. Not only can wildlife managers determine the presence of a species accurately, but they can monitor populations with considerably less effort than livetrapping requires. Although our study was specific to coastal dune communities, our methods could be adapted for the creation of a classification tree for identifying tracks from suites of species in other areas.

If you build it, will they come? Use of restored dunes by beach mice

Restoration of coastal habitat fragmented, degraded, or destroyed by development and climate‐related processes such as sea level rise and storm surge usually involves planting native plants to restore habitat structure, but whether and how restored areas benefit taxa other than plants is rarely reported. Installing restoration plantings is one method used to build habitat such as beach dunes where dunes have been lost, potentially creating habitat for dune‐dependent species. We compared use of natural vegetated dunes, open sand gaps, and restoration plantings (habitat treatment) by Perdido Key beach mice (Peromyscus polionotus trissyllepsis) over 3 years using tracking tubes to assess the value of restoration plantings for beach mice. Tubes were monitored in two seasons (early and mid‐summer), and under new and full moon conditions. Mice used restoration plantings less than natural vegetated dunes but more than open sand gaps, which suggests restoration plantings may facilitate movement of mice across fragmented areas. Both season and moon phase influenced the effect of habitat treatment, interactions which may be attributable to perceived risk associated with movement under a combination of different conditions of ambient light, vegetation cover, and habitat novelty. Our results show restoration plantings provide habitat for movement and foraging, and may ameliorate some consequences of sea level rise and storms for beach mice and potentially other dune‐dependent species into the future.

Coastal Groundcherry, Physalis angustifolia

Coastal groundcherry occurs on beach dunes, coastal grasslands, coastal scrub, and disturbed areas. This plantis found throughout coastal counties on the west coast of Florida—except for the Big Bend region and the extreme southeasternmost counties—and more broadly west to Louisiana. Threatened and endangered beach mice and many other animals rely on this plant as a food source. Plants can be longed-lived and form relatively thick tuberous roots. Coastal groundcherry can hybridize with other Physalis species, particularly with P. viscosa, and has long frustrated plant taxonomists because of the inherent variation within the genus (Sullivan 1985).https://edis.ifas.ufl.edu/sg180
 This publication is derived from information in SGEB-75/SG156, Dune Restoration and Enhancement for the Florida Panhandle, by Debbie Miller, Mack Thetford, Christina Verlinde, Gabriel Campbell, and Ashlynn Smith. https://edis.ifas.ufl.edu/sg156.

Colonization and divergence: phylogeography and population genetics of the Atlantic coast beach mice

Barrier island taxa provide an opportunity to investigate recent evolutionary processes, such as colonization and isolation of recently diverged taxa, and provide important insights into understanding contemporary diversity and the assessment of conservation units. Using rapidly evolving genetic markers (mitochondrial DNA and microsatellites), we studied the Atlantic coast beach mouse subspecies (Peromyscus polionotus decoloratus, P. p. niveiventris, and P. p. phasma). Our data indicate that each of the extant coastal subspecies (P. p. niveiventris and P. p. phasma) is comprised of unique haplotypes indicative of their isolation, while the extinct subspecies, P. p. decoloratus, contain a single haplotype, which was shared with P. p. phasma. Moreover, all the coastal haplotypes originate from a single mainland haplotype found in central Florida, USA. The microsatellite data indicated high levels of genetic structure among our sampled populations. Additionally, these data group the populations into three distinct genetic clusters, with each of the extant coastal subspecies belonging to their own cluster and the mainland individuals forming a separate cluster. The extant Atlantic coast beach mice are on separate evolutionary trajectories, thus representative of separate taxonomic units. Therefore, the data support that two extant subspecies on the Florida Atlantic coast fit the Distinct Population Segment designation and should be managed and conserved as two separate independent units.

An updated genetic map of Peromyscus with chromosomal assignment of linkage groups.

Species across the rodent genus Peromyscus have become prominent models for studying diverse mechanistic and evolutionary processes, including chromosome evolution, infectious disease transmission and human health, ecological adaptation, coat color variation, and parental care. Supporting such diverse research programs has been the development of genetic and genomic resources for species within this genus, including genome data, interspecific chromosome homologies, and a recently developed genetic map. Based on interspecific hybrids between the deer mouse (Peromyscus maniculatus bairdii) and the old-field, or beach, mouse (Peromyscus polionotus) and backcross progeny to Peromyscus maniculatus, a linkage map was developed based on 190 genes and 141 microsatellite loci. However, resolution of several linkage groups with respect to chromosome assignment was lacking and four chromosomes (8, 16, 20, and 21) were not clearly delineated with linkage data alone. The recent development of a high-density map for Peromyscus proved ineffective in resolving chromosome linkage for these four chromosomes. Herein we present an updated linkage map for Peromyscus maniculatus, including linkage group-chromosome assignments, using fluorescence in situ hybridization mapping of BACs and whole chromosome paints. We resolve the previously conflicting chromosome assignment of linkage groups to Chromosomes 8, 16, 20, and 21, and confirm the assignment of linkage groups to Chromosomes 18 and 22. This updated linkage map with validated chromosome assignment provides a solid foundation for chromosome nomenclature for this species.

Increasing Detection by Reducing Disturbance and Excluding Nontarget Small Mammal Species: An Occupancy Study Approach

Abstract Track tubes are a noninvasive, efficient method to monitor populations of small mammals that can be implemented on a large landscape scale and are a cost-effective approach for certain sampling situations. As with all field sampling tools, modifications are made depending on research objectives, habitat being sampled, and target species. We conducted two experiments with the objective to increase efficiency and decrease labor while retaining high detection probabilities as part of an Annual Multi-Agency Regional Southeastern Beach Mouse Peromyscus polionotus niveiventris Habitat Occupancy Survey. We conducted studies along a contiguous 72-km coastline of the Cape Canaveral Barrier Island Complex in east-central Florida, USA, that includes the Kennedy Space Center, Cape Canaveral Air Force Station, and Canaveral National Seashore. We conducted the experiments to address several issues that had regularly compromised our survey data. One experiment assessed the ideal length of deployment times for track tubes in various habitat types with multiple species where southeastern beach mice were previously detected. Another experiment, determined how to restrict certain meso-mammal species (raccoons Procyon lotor, and eastern spotted skunks Spilogale putorius) from knocking over the tubes or reaching into the tubes, thus reducing disturbance that results in missing data; or from entering the tubes (cotton rats Sigmodon hispidus), thereby obscuring any potential or actual footprints of the southeastern beach mouse or other targeted species. We observed an increase in the detection rate of southeastern beach mice in track tubes with increased nights of deployment (likelihood ratio test χ2 = 18.71, df = 3, P < 0.001) with the greatest increase between 3 nights and 6 nights and apparent leveling off between nights 9 and 12 and a large decrease in the detection rate of southeastern beach mice in track tubes with 0.5-in. (1.3-cm) excluders compared with the other-size excluders (likelihood ratio test χ2 = 167.89, df = 5, P < 0.001). We also found that 1-in. (2.5-cm) excluders prevented access by meso-mammals or entry by cotton rats and did not adversely affect the detection of either beach mice or cotton mice Peromyscus gossypinus, but did reduce disturbance and resulted in fewer missing data. These statistically significant process improvements have application for others involved with small mammal monitoring and species management.

Influence of sex and transients on survival and detection probabilities of the southeastern beach mouse

We used Cormack–Jolly–Seber capture–recapture analyses to investigate differences in monthly survival of the southeastern beach mouse (Peromyscus polionotus niveiventris) between sexes, between juveniles and adults, and effects due to the presence of transients that can bias survival estimates. We accounted for transients (e.g., nonresidents) by distinguishing survival for the initial month after an individuals' 1st capture from monthly survival after the 1st recapture. Survival estimates for 1st captures and recaptures of females were 0.70 and 0.78, respectively. Survival estimates for 1st captures and recaptures of males were 0.74 and 0.80, respectively. Our results showed that a comparably small proportion of transients (females = 0.10; males = 0.08) can bias survival estimates.

Germination and Predation of Quercus geminata and Quercus myrtifolia Acorns on Santa Rosa Island, Florida

Tobing, S.L.; Thetford, M., and Miller, D.L., 2018. Germination and predation of Quercus geminata and Quercus myrtifolia acorns on Santa Rosa Island, Florida.Scrub oak species are an important component of barrier island and xeric mainland scrub ecosystems. Limited recruitment of scrub oaks has been noted on barrier islands. This study evaluated several factors believed to alter germination of the scrub oak species Quercus geminata (sand live oak) and Quercus myrtifolia (myrtle oak) along interior dune fields and swales of Santa Rosa Island in the western panhandle of Florida. Influences of dune-field microrelief (interdunal swale or low-lying dune), vegetation cover (vegetated and unvegetated), and seed placement (buried and surface) on germination of acorns were analyzed. Predation of acorns with and without protection from nonburrowing herbivores (open-bottom cage and no cage) was also evaluated. Acorn predation was high. Less than 1% of Q. myrtifolia acorns were recovered outside cages. Only 33% of Q. geminata acorns were recovered outside of cages, with acorn loss reduced only by burial. Burrowing beach mice were able to access acorns within cages. Recovery inside cages was also greater when acorns were buried. Germination of Q. geminata acorns was 15% and was greatest when acorns were buried but was not influenced by microsite or vegetation cover. Germination of Q. myrtifolia was 74% and greater when buried but similar regardless of microsite and vegetation cover. Scrub restoration strategies to increase germination of these two scrub oak species would benefit from an approach that implements direct seeding (burial) in mesic microsites, while sites with strong predator pressure would further benefit from addition of physical protection from seed predators.