Traditional single prediction models struggle to address the complexity and nonlinear changes in water quality forecasting. To address this challenge, this study proposed a coupled prediction model (RF-TVSV-SCL). The model includes Random Forest (RF) feature selection, dual signal decomposition (Time-Varying Filtered Empirical Mode Decomposition, TVF-EMD, and Sparrow Search Algorithm-Optimized Variational Mode Decomposition, SSA-VMD), and a deep learning predictive model (Sparrow Search Algorithm-Convolutional Neural Network-Long Short-Term Memory, SSA-CNN-LSTM). Firstly, the RF method was used for feature selection to extract important features relevant to water quality prediction. Then, TVF-EMD was employed for preliminary decomposition of the water quality data, followed by a secondary decomposition of complex Intrinsic Mode Function (IMF) components using SSA-VMD. Finally, the SSA-CNN-LSTM model was utilized to predict the processed data. This model was evaluated for predicting total phosphorus (TP), total nitrogen (TN), ammonia nitrogen (NH3-N), dissolved oxygen (DO), permanganate index (CODMn), conductivity (EC), and turbidity (TB), across 1, 3, 5, and 7-d forecast periods. The model performed exceptionally well in short-term predictions, particularly within the 1–3 d range. For 1-, 3-, 5-, and 7-d forecasts, R2 ranged from 0.93–0.96, 0.79–0.87, 0.63–0.72, and 0.56–0.64, respectively, significantly outperforming other comparison models. The RF-TVSV-SCL model demonstrates excellent predictive capability and generalization ability, providing robust technical support for water quality forecasting and pollution prevention.