SUMMARY The amplitude, frequency and polarization of ground motion at the surface can be affected by the local geology. While low-velocity sediments and fill can amplify ground motions in certain frequency ranges, the low velocities found in fault zones can also produce prominent wavelets. In this paper, we provide further evidence that polarization of ground motion can be affected by the geological fabric in fault zones that have sustained significant brittle deformation. Aside from the well-known effect of fault-trapped waves in the low-velocity zone with polarization azimuths parallel to the fault strike, the effect of stiffness anisotropy was recently recognized with polarization azimuths at high-angle to the fault strike and orthogonal to the locally predominant fracture field in the fault damage zone. To clarify further such features, we investigate directional amplification effects across the San Jacinto fault zone in Southern California using seismic data recorded by permanent seismic stations and dense across-fault arrays. We observe three main polarization trends. The first trend parallel to the fault strike is ascribed to fault-trapped waves along the low-velocity zone, in agreement with several studies in the last decade in the same region. The second and third trends are orthogonal to the orientation of R and T Riedel planes, respectively. They are related to the stiffness anisotropy in densely fractured rocks in the damage zone, which are more compliant orthogonal to their fractures. At some locations the two effects are superimposed, occurring in different and distinct frequency ranges. Directional amplification at rock sites can be important for expected ground motion and seismic hazard. However, in seismic engineering the current prescriptions of seismic codes do not account for amplification effects at rock sites at frequencies of engineering interest.