To determine whether in healthy horses and those with colic, exposure of peritoneal fluid to room air affects values obtained on biochemical analysis. Prospective study. Adult horses with a primary complaint of acute abdominal pain (n=29) and 12 healthy horses. Peritoneal fluid was aseptically collected under aerobic and anaerobic conditions. After collection, pH, PCO(2) , PO(2) , HCO(3) (-) , Na(+) , ionized Ca(2+) , K(+) , lactate, and glucose were immediately measured using a commercial blood gas analyzer. Biochemical variables were compared between aerobically and anaerobically obtained samples using a paired t-test. In healthy horses, peritoneal fluid samples collected under anaerobic conditions had higher PCO(2) and ionized Ca(2+) and lower PO(2) , HCO(3) (-) , and pH compared with samples exposed to air. No differences were observed for K(+) , Na(+) , glucose, and lactate. In horses with colic, samples collected anaerobically had higher PCO(2) , ionized Ca(2+) , Na(+) , and glucose and lower PO(2) , HCO(3) (-) , and pH value compared with samples exposed to air. No differences were observed for K(+) and lactate. Exposure of peritoneal fluid to room air had a significant effect on pH, PCO(2) , PO(2) , and variables associated or dependent on changes in pH such as HCO(3) (-) and ionized Ca(2+) . Interpretation of biochemical analysis of peritoneal fluid may be influenced by sample collection method.