Pentacoordinate Carbon Research Articles

Triel Bonds with Methyl Groups as Electron Donors. A Pentacoordinate Carbon Atom.

The triel bond (TrB) formed between Be(CH3)2/Mg(CH3)2 and TrX3 (Tr = B, Al, and Ga; X = H, F, Cl, Br, and I) is investigated via the MP2/aug-cc-pVTZ(PP) quantum chemical protocol. The C atoms of the methyl groups in M(CH3)2 are characterized by a negative electrostatic potential and act as an electron donor in a triel bond with the π-hole above the Tr atom of planar TrX3. The interaction energy spans a wide range between 2 and 69 kcal/mol. Mg(CH3)2 forms a stronger TrB than does Be(CH3)2, which comports with the more negative electrostatic potential on its methyl groups. Some of the complexes involving Mg display a high degree of transfer of the methyl group from Mg to Tr, which is accompanied by an inversion of the bridging methyl and a sizable pyramidalization of the TrX3 unit. The geometries of these complexes have the properties of the long sought pentacoordinate C which has eluded identification and characterization in the past.

Ternary XBe4H5- (X = Si, Ge, Sn, Pb) Clusters: Planar Tetracoordinate Si/Ge/Sn/Pb Species with 18 Valence Electrons.

As one of the important probes of chemical bonding, planar tetracoordinate carbon (ptC) compounds have been receiving much attention. Compared with ptC clusters, the heavier planar tetracoordinate silicon, germanium, tin, lead (ptSi/Ge/Sn/Pb) systems are scarcer and more exotic. The 18-valence-electron (ve)-counting is one important guide, though not the only rule, for the design of planar tetra-, penta-coordinate carbon and silicon clusters. The 18ve ptSi/Ge system is very scarce and needs to be expanded. Based on the isoelectronic principle and bonding similarity between the Al atom and the BeH unit, inspired by the previously reported ptSi global minimum (GM) SiAl42-, a series of ternary 18 ve XBe4H5- (X = Si, Ge, Sn, Pb) clusters were predicted with the ptSi/Ge/Sn/Pb centers. Extensive density functional theory (DFT) global minimum searches and high-level CCSD(T) calculations performed herein indicated that these ptSi/Ge/Sn/Pb XBe4H5- (X = Si, Ge, Sn, Pb) clusters were all true GMs on their potential energy surfaces. These GMs of XBe4H5- (X = Si, Ge, Sn, Pb) species possessed the beautiful fan-shaped structures: XBe4 unit can be stabilized by three peripheries bridging H and two terminal H atoms. It should be noted that XBe4H5- (X = Si, Ge, Sn, Pb) were the first ternary 18 ve ptSi/Ge/Sn/Pb species. The natural bond orbital (NBO), canonical molecular orbitals (CMOs) and adaptive natural densitpartitioning (AdNDP) analyses indicated that 18ve are ideal for these ptX clusters: delocalized one π and three σ bonds for the XBe4 core, three Be-H-Be 3c-2e and two Be-H σ bonds for the periphery. Additionally, 2π plus 6σ double aromaticity was found to be crucial for the stability of the ptX XBe4H5- (X = Si, Ge, Sn, Pb) clusters. The simulated photoelectron spectra of XBe4H5- (X = Si, Ge, Sn, Pb) clusters will provide theoretical basis for further experimental characterization.

Gas-Phase Characterization of Hypervalent Carbon Compounds Bearing 7-6-7-Ring Skeleton: Penta- versus Tetra-Coordinate Isomers.

In this study, we afford explicit characterizations of the electronic and geometrical structures of recently reported hypervalent penta-coordinate carbon compounds by using gas-phase characterization techniques: photodissociation spectroscopy (PDS) and ion mobility-mass spectrometry (IM-MS). In particular for a compound with moderately electron-donating ligands, bearing p-methylthiophenyl substituents, the coexistence of tetra- and penta-coordinate isomers is confirmed, consistent with solution characterizations. It is in sharp contrast to the exclusive tetra-coordinate form (with normal valence of the central carbon atom) in the single crystal. This suggests that a non-polar environment makes the penta-coordinate structure thermodynamically most stable. This delicate difference between the tetra- and penta-coordinate structures, which depends on the environment, is a close reflection of the lower activation barrier of the SN 2 reaction found in neutral solvent or gas-phase reactions.

Planar pentacoordinate carbon in a 16-electron neutral CCu2Be3H4 cluster.

Planar hypercoordination in carbon is a fascinating area, which departs from the usual view of coordination geometry in carbon. Herein, we propose a planar pentacoordinate carbon species in the global minimum of the CCu2Be3H4 cluster. The cluster is a 16-electron species that is thermodynamically and kinetically very stable. Bonding analyses reveal 2π/6σ double aromaticity in the cluster. A low-energy isomerization pathway also reveals that the cluster has a sufficient lifetime for its experimental detection.

Revisiting the potential-energy surface of CnBe3n+2H2n+22+ (n = 2-4) clusters: are planar pentacoordinate carbon structures the global minima?

Using various exploration strategies, in this study, we investigated the potential energy surfaces (PES) of CBe5H5+ and CnBe3n+2H2n+22+ (n = 2-4) clusters. Previous studies proposed that the planar pentacoordinate carbons (ppCs) were the global minima of these clusters. However, our study identified new putative global minima and competitive isomers, refuting some previous assignments. We employed several methods, including evolutive-inspired stochastic approaches guided by "chemical criteria", and ab initio molecular dynamics simulations at elevated temperatures. Our results showed that the size of the scanned population significantly affected the evolutive method and that constrained or guided procedures showed an advantage in identifying better minima for larger systems. This study demonstrated that using multiple complementary strategies can result in a wider variety of minima in a given energy range. Our findings provide valuable insights into exploring the potential energy surfaces of clusters, mainly medium-sized clusters, which could be the connections between small clusters and nanomaterials.

Synthesis and Characterization of Hypervalent Pentacoordinate Carbon Compounds Bearing a 7-6-7-Ring Skeleton.

To stabilize SN 2 transition state-like penta-coordinate carbon species, triaryl-substituted cationic carbon compounds bearing a moderately flexible 7-6-7-ring skeleton with sulfur donors were synthesized and characterized. Electronic effects of para substituents (R=Cl, F, H, CH3 , SMe, OMe) of the two equatorial aryl groups bound to the cationic central carbon were investigated systematically along with a planar bidentate thioxanthene derivative. X-ray analysis on their solid-state structures showed that the parent (R=H), chloro-, fluoro- and methyl-derivatives were tetracoordinate carbon (sulfonium) structures, while the p-MeO and thioxanthenyl system were pentacoordinate carbocation structures. The Hammett substituent constants for the para substituents (σp + ) correlates well with the bonding in these compounds. The methylthio-derivative with intermediate Hammett substituent constants (p-MeS; σp + =-0.60) showed a tetracooridnate solid-state structure, though solution UV-Vis properties suggested the presence of a penta-coordinate structure. These findings amount to the first unambiguous solution evidence of the hypervalent apical 3c-4e interactions in pentacoordinate carbon compounds.

Structure and Bonding in Planar Hypercoordinate Carbon Compounds

The term hypercoordination refers to the extent of the coordination of an element by its normal value. In the hypercoordination sphere, the element can achieve planar and/or non-planar molecular shape. Hence, planar hypercoordinate carbon species violate two structural rules: (i) The highest coordination number of carbon is four and (ii) the tetrahedral orientation by the connected elements and/or groups. The unusual planar orientations are mostly stabilized by the electronic interactions of the central atom with the surrounding ligands. In this review article, we will talk about the current progress in the theoretical prediction of viable planar hypercoordinate carbon compounds. Primary knowledge of the planar hypercoordinate chemistry will lead to its forthcoming expansion. Experimental and theoretical interests in planar tetracoordinate carbon (ptC), planar pentacoordinate carbon (ppC), and planar hexacoordinate carbon (phC) are continued. The proposed electronic and mechanical strategies are helpful for the designing of the ptC compounds. Moreover, the 18-valence electron rule can guide the design of new ptC clusters computationally as well as experimentally. However, the counting of 18-valence electrons is not a requisite condition to contain a ptC in a cluster. Furthermore, this ptC idea is expanded to the probability of a greater coordination number of carbon in planar orientations. Unfortunately, until now, there are no such logical approaches to designing ppC, phC, or higher-coordinate carbon molecules/ions. There exist a few global minimum structures of phC clusters identified computationally, but none have been detected experimentally. All planar hypercoordinate carbon species in the global minima may be feasible in the gas phase.

Pentacoordinate Carbon Atoms in a Ferrocene Dication Derivative—[Fe(Si2-η5-C5H2)2]2+

Pentacoordinate carbon atoms are theoretically predicted here in a ferrocene dication derivative in the eclipsed-(1; C2v), gauche-(2; C2) and staggered-[Fe(Si2-η5-C5H2)2]2+(3; C2h) forms for the first time. Energetically, the relative energy gaps for 2 and 3 range from −3.06 to 16.74 and −2.78 to 40.34 kJ mol−1, respectively, when compared to the singlet electronic state of 1 at different levels. The planar tetracoordinate carbon (ptC) atom in the ligand Si2C5H2 becomes a pentacoordinate carbon upon complexation. The ligand with a ptC atom was predicted to be both a thermodynamically and kinetically stable molecule by some of us in our earlier theoretical works. Natural bond orbital and adaptive natural density partitioning analyses confirm the pentacoordinate nature of carbon in these three complexes (1–3). Although they are hypothetical at the moment, they support the idea of “hypercoordinate metallocenes” within organometallic chemistry. Moreover, ab initio molecular dynamics simulations carried out at 298 K temperature for 2000 fs suggest that these molecules are kinetically stable.

Fusing 10-vertex closo-carborane anions with N-heterocyclic carbenes.

Discovered by Knöth in 1964, the 10-vertex closo-carborane anion [HCB9H91-] is a classical bicapped square antiprism that contains an unusual pentacoordinate carbon center. Compared to its larger icosahedral cousin [HCB11H111-], few investigations have been made into its use as a weakly coordinating anion or as a ligand substituent. Here we show that it is possible to prepare both a dianionic N-heterocyclic carbene (NHC) Li+ adduct as well as a trianionic C-2, C-5 dilithio species featuring two 10-vertex carborane anion substituents. All compounds were characterized via multinuclear NMR spectroscopy, single crystal X-ray diffraction, and HRMS when possible.

Planar pentacoordinate carbon in [XC7H2]2+(X = Be and Mg) and its derivatives

The planar pentacoordinate carbon (ppC) atom is theoretically established here in [XC7H2]2+ and [XSi2C5H2]2+, where X = Be and Mg, using density functional theory. Inclusion compounds with alkali and alkaline earth metal ions are identified with the monomer units of tricyclic C7H2 and Si2C5H2 isomers with a planar tetracoordinate carbon (ptC) atom. While all alkali and some alkaline earth metals (Ca2+, Sr2+, and Ba2+) stabilize the ptC isomer in both cases, Be2+ and Mg2+ ions form a bond directly with the ptC atom, thus making it a ppC atom. The theoretical binding energies computed at the PBE0-D3/def2-TZVP level of theory are ∼-9.68, -10.42, -5.85, and -5.47 eV for [BeC7H2]2+, [BeSi2C5H2]2+, [MgC7H2]2+, and [MgSi2C5H2]2+, respectively.

Planar Hypercoordinate Carbons in Alkali Metal Decorated CE3 2- and CE2 2- Dianions.

After exploring the potential energy surfaces of Mm CE2 p (E=S-Te, M=Li-Cs, m=2, 3 and p=m-2) and Mn CE3 q (E=S-Te, M=Li-Cs, n=1, 2, q=n-2) combinations, we introduce 38 new global minima containing a planar hypercoordinate carbon atom (24 with a planar tetracoordinate carbon and 14 with a planar pentacoordinate carbon). These exotic clusters result from the decoration of V-shaped CE2 2- and Y-shaped CE3 2- dianions, respectively, with alkali counterions. All these 38 systems fulfill the geometrical and electronic criteria to be considered as true planar hypercoordinate carbon systems. Chemical bonding analyses indicate that carbon is covalently bonded to chalcogens and ionically connected to alkali metals.

CAl4Mg0/−: Global Minima with a Planar Tetracoordinate Carbon Atom

Isomers of CAl4Mg and CAl4Mg− have been theoretically characterized for the first time. The most stable isomer for both the neutral and anion contain a planar tetracoordinate carbon (ptC) atom. Unlike the isovalent CAl4Be case, which contains a planar pentacoordinate carbon atom as the global minimum geometry, replacing beryllium with magnesium makes the ptC isomer the global minimum due to increased ionic radii of magnesium. However, it is relatively easier to conduct experimental studies for CAl4Mg0/− as beryllium is toxic. While the neutral molecule containing the ptC atom follows the 18 valence electron rule, the anion breaks the rule with 19 valence electrons. The electron affinity of CAl4Mg is in the range of 1.96–2.05 eV. Both the global minima exhibit π/σ double aromaticity. Ab initio molecular dynamics simulations were carried out for both the global minima at 298 K for 10 ps to confirm their kinetic stability.

Understanding the C-F Bond Activation Mediated by Frustrated Lewis Pairs: Crucial Role of Non-covalent Interactions.

The activation of a single C-F bond in di- and trifluoromethyl groups by frustrated Lewis pairs (FLPs) has been computationally explored by means of Density Functional Theory calculations. It is found that in this activation reaction the FLP partners exhibit a peculiar cooperative action, which is markedly different from related FLP-mediated processes, and where non-covalent interactions established between the Lewis base and the substrate play a decisive role. In addition, the process proceeds through the intermediacy of a hypervalent species featuring a pentacoordinate carbon atom, which is rare in the chemistry of FLPs. The physical factors controlling this process as well as the bonding situation of these hypervalent intermediates have been quantitatively analyzed in detail by using state-of-the-art computational methods to not only rationalize the mechanism of the transformation but also to guide experimentalists towards the realization of these so far elusive hypervalent systems.

Trapping an unusual pentacoordinate carbon atom in a neutral trialuminum complex.

A neutral trialuminum complex incorporates a pentacoordinate carbon through a methylidene bridge linking the three metal atoms. The rigid electron-deficient Al3 core stabilizes the hypercoordinate carbon atom resulting in the shortest equatorial Al-C distance reported for such an Al3-(μ3-CH2) unit.

Highly Stable Two-Dimensional Iron Monocarbide with Planar Hypercoordinate Moiety and Superior Li-Ion Storage Performance.

Stable planar hypercoordinate motifs have been recently demonstrated in two-dimensional (2D) confinement systems, while perfectly planar hypercoordinate motifs in 2D carbon-transition metal systems are rarely reported. Here, by using comprehensive ab initio computations, we discover two new iron monocarbide (FeC) binary sheets stabilized at 2D confined space, labeled as tetragonal-FeC (t-FeC) and orthorhombic-FeC (o-FeC), which are energetically more favorable compared with the previously reported square and honeycomb lattices. The proposed t-FeC is the global minimum configuration in the 2D space, and each carbon atom is four-coordinated with four ambient iron atoms, considered as the quasi-planar tetragonal lattice. Strikingly, the o-FeC monolayer is an orthorhombic phase with a perfectly planar pentacoordinate carbon moiety and a planar seven-coordinate iron moiety. These monolayers are the first example of a simultaneously pentacoordinate carbon and planar seven-coordinate Fe-containing material. State-of-the-art theoretical calculations confirm that all these monolayers have significantly dynamic, mechanical, and thermal stabilities. Among these two monolayers, the t-FeC monolayer shows a higher theoretical capacity (395 mAh g-1) and can stably adsorb Li up to t-FeCLi4 (1579 mAh g-1). The low migration energy barrier is predicted as small as 0.26 eV for Li, which results in the fast diffusion of Li atoms on this monolayer, making it a promising candidate for lithium-ion battery material.

Planar Hypercoordinate Motifs in Two-Dimensional Materials.

ConspectusAs one of the most important and versatile elements, carbon renders itself as one of the most fundamental and cutting-edge topics in chemistry, physics, and materials science. Many carbon-based chemical rules were established accordingly. While the tetrahedral predilection of tetracoordinate carbon has been a cornerstone of organic chemistry since 1874, almost a century later tetracoordinate carbon was found to be able to adopt planar structures known as planar tetracoordinate carbon (ptC), which are stabilized electronically by good π-acceptor (delocalization of a lone electron pair of ptC) or σ-donor (promoting electron transfer to electron-deficient bonding) substituents or mechanically by appropriate steric enforcement. The experimental and theoretical achievements for the rule-breaking ptC species totally refreshed our understanding of chemical bonding and triggered exploration of peculiar molecules featuring planar pentacoordinate carbon (ppC) and planar hexacoordinate carbon (phC) as well as other outlandish species such as planar hypercoordinate silicon.While the planar hypercoordinate carbon chemistry has been gradually established for molecules in the past five decades, there is growing interest in pursuing their extension systems, especially in two-dimensional (2D) space as a result of the recent extensive studies of graphene and its analogues. Though the natural 2D layered crystals do not contain any planar hypercoordinate carbon or silicon, several 2D nanosheets featuring planar or quasi-planar hypercoordinate ones have been theoretically suggested. Encouragingly, these unique planar configurations possess decent stabilities, and some of them are even the global minimum structure, exhibiting great potential for experimental realization. As the nature of a material is mainly determined by its structural characteristics (e.g., dimensionality, crystallography, and bonding), the combination of planar hypercoordinate chemistry and 2D nanoscience not only endows these rule-breaking systems with the merits of 2D materials but also may offer various promising properties and applications. For example, an unusual negative Poisson's ratio can be found in ppC-containing Be5C2 and planar pentacoordinate silicon (ppSi)-containing CaSi monolayers, of which the former has an anisotropic Dirac cone and the latter is a semiconductor with a desirable band gap for the semiconductor industry. Specially, shortly after the theoretical prediction, a planar hexacoordinate silicon (phSi)-containing Cu2Si monolayer was experimentally synthesized and characterized with the 2D Dirac nodal line fermion, which offers a platform to achieve high-speed, low-dissipation nanodevices.In this Account, we review the recent progress, mostly by density functional theory (DFT) computations, in designing 2D materials with planar hypercoordinate motifs. We describe the key achievements in this field, paying special attention to the "bottom-up" and "isoelectronic substitution" design strategies. In addition, the fundamental stabilization mechanisms of planar hypercoordinate motifs in an infinite layer are discussed. We hope that this Account will inspire more experimental and theoretical efforts to explore nanomaterials with such unconventional chemical bonding.

Planar or tetrahedral? A ternary 17-electron CBe5H4+ cluster with planar pentacoordinate carbon.

A 17-electron CBe5H4+ cluster features planar pentacoordinate carbon, owing to the 2π/6σ double aromaticity. The neutral CBe5H4 cluster has a tetrahedral configuration despite its 18-electron counting. The latter species is governed by σ conjugation.

Avoided spin coupling: an unexpected σ-σ diradical in global planar pentacoordinate carbon.

We present a global planar pentacoordinate carbon (ppC) featuring a hitherto unreported σ-σ diradical characteristic. Using the multi-reference approach combined with the CCSD(T)/aug-cc-pVTZ method, the ppC C3Li3- was found to be an intriguing triplet ground state, in which the unpaired density is mostly located at three Li ligands. Chemical bonding analysis reveals that the 2pzπ electrons of C3Li3- are fully located at the C3 ring formed by C-C multiple bonds, in contrast to the perfect 2pzπ-delocalization found in the well-known ppCs.

Influence of stepwise oxidation on the structure, stability, and properties of planar pentacoordinate carbon species CAl5.

Computational design has played an important role in planar hyper-coordinate carbon (phC) chemistry. However, none of numerous computationally predicted phC species were subsequently successfully synthesized in the condensed phase, perhaps due to the frustrating issue of oxidation. In the present work, we studied the influence of stepwise oxidation on the structure, stability, and properties of phC species using the milestone planar pentacoordinate carbon (ppC) species CAl5+ as an example. Our results indicated that the ppC structure of CAl5+ would be directly destroyed with one, two, or six O atom(s) per molecule present and indirectly with three or four O atoms, but maintained with five O atoms due to the ppC isomer of CAl5O5+ being a kinetically stable global energy minimum displaying σ and π double aromaticity. Moreover, the magnitudes of the first to fifth vertical oxygen affinities (VOAs) for CAl5+ were determined to be very high (-85.5 to -116.3 kcal mol-1), probably due to the existence of peripheral diffuse Al-Al bond(s). However, the sixth VOA was reduced significantly to -50.2 kcal mol-1, consistent with the absence of any diffuse Al-Al bond in the corresponding CAl5O5+ species. So CAl5O5+ may be insensitive to oxidation. Therefore, the ppC species D5h CAl5O5+ might be resistant to being degraded under a delicate control of oxidation level (producing five O atoms per CAl5+ molecule).

Embedding a Planar Hypercoordinate Carbon Atom into a [4n+2] π-System.

Through delicate tuning of the electronic structure, we report herein a rational design of seventeen new putative global minimum energy structures containing a planar tetra- or pentacoordinate carbon atom embedded in an aromatic hydrocarbon. These structures are the result of replacing three consecutive hydrogen atoms of an aromatic hydrocarbon by less electronegative groups, forming a multicenter σ-bond with the planar hypercoordinate carbon atom and participating in the π-electron delocalization. This strategy that maximizes both mechanical and electronic effects through aromatic architectures can be extended to several molecular combinations to achieve new and diverse compounds containing planar hypercoordinate carbon centers.