Developing well-defined structures and desired properties for porous organic polymer (POP) supported catalysts by controlling their composition, size, and morphology is of great significance. Herein, we report a preparation of polyaniline (PANI) supported Pd nanoparticles (NPs) with controllable of the structure and morphology. The protocol involves the introduction of MnO2 with different crystal structures (α, β, γ, δ, ε) serving as both reaction templates and oxidants. MnO2 selectively oxidizes the aniline to polyaniline with diverse regular distribution of benzene and quinone, thus leading to the Pd/PANI catalyst growth mode which prominently impacts the charge transfer between Pd and PANI, as well as the dispersion of metal NPs. In particular, Pd/ε-PANI greatly improves the turnover frequency (TOF), up to 88.3 h-1,in the reductive coupling of the furfural derivatives to potential bio-based plasticizers. Systematic characterizations reveal the unique oxidation state of the support in the Pd/ε-PANI catalyst and coordination mode of Pd that drives the formation of highly dispersed Pd nanoclusters. Density functional theory (DFT) calculations show the more electron rich Pd/PANI catalyst has the lower energy barrier in the oxidative addition step, which favors the C-C coupling reaction.