Body Pattern Research Articles

The Influence of Reservoir Architecture on the Connectivity of the Shahejie Formation in the Liuzhong Oilfield

The lack of research on fine reservoir structure and sand body patterns in the Jidong Oilfield currently restricts the efficient development of the oilfield. Therefore, this article mainly focuses on the study of the main types of facies of the Shahejie Formation, sand body splicing patterns, and the degree of sand-body connectivity. The interpretation and analysis of well-logging, three-dimensional (3D) seismic, and production data were used to lay the foundation for the study and evaluate the remaining oil distribution. The results indicate that the reservoir sandstones in the study area were mainly deposited in a submerged distributary channel, mouth bar, and distributary channel flank. Using logging information to identify individual sands, a deltaic sand assemblage pattern is proposed by analyzing the sedimentary architecture. In the vertical direction, the deltaic sand body collocation style can be divided into cut-and-stack and separated types. In the lateral direction, the multi-stage sand bodies exhibit three collocation patterns: the side-cutting type, the mouth bar contact type, and the submerged distributary channel flank contact type. The degree of sand-body connectivity under different splicing patterns was analyzed and verified using production dynamic data. It was found that the sand body splicing pattern with a vertical up-cut stack and the sand body splicing pattern with a lateral up-cut had the best inter-sand-body connectivity.

THE DEVELOPMENT OF LOBSTER PUERULUS (PANULIRUS ORNATUS AND P. HOMARUS) IN CAPTIVITY ENVIRONMENT

The present study was conducted to investigate the development of Panulirus ornatus and P. homarus puerulus larvae into juveniles in a captive environment. Pueruli were collected from the local fishermen and transported by air to the research facilities. Puerulus of each species were stocked into 3 floating plastic compartments (5 cm × 12 cm × 17 cm) with sufficient holes, aeration, and a filtration system until reached their first moulting. Results indicated that both puerulus species were completely moulted after 6 days of stocking with the survival rate of 100% and 93.3%. Moulting began on Day 5 for P. ornatus and Day 4 for P. homarus pueruli. The weight of P. ornatus increased significantly after the metamorphosis (P<0.05). The initial and final weights of P. ornatus were significantly greater than P. homarus (P<0.05). In addition, the total and carapace lengths of both species were significantly increased (P<0.05). Morphological observations indicated that there was a significant distinguishing feature such as the antenae form and body pattern colour of both species. In conclusion, proper handling of the pueruli according to each species is required to preserve the quality in order to achieve greater success in metamorphosis into juveniles.

Automatic Evaluation of Functional Movement Screening Based on Attention Mechanism and Score Distribution Prediction

Functional movement screening (FMS) is a crucial testing method that evaluates fundamental movement patterns in the human body and identifies functional limitations. However, due to the inherent complexity of human movements, the automated assessment of FMS poses significant challenges. Prior methodologies have struggled to effectively capture and model critical human features in video data. To address this challenge, this paper introduces an automatic assessment approach for FMS by leveraging deep learning techniques. The proposed method harnesses an I3D network to extract spatiotemporal video features across various scales and levels. Additionally, an attention mechanism (AM) module is incorporated to enable the network to focus more on human movement characteristics, enhancing its sensitivity to diverse location features. Furthermore, the multilayer perceptron (MLP) module is employed to effectively discern intricate patterns and features within the input data, facilitating its classification into multiple categories. Experimental evaluations conducted on publicly available datasets demonstrate that the proposed approach achieves state-of-the-art performance levels. Notably, in comparison to existing state-of-the-art (SOTA) methods, this approach exhibits a marked improvement in accuracy. These results corroborate the efficacy of the I3D-AM-MLP framework, indicating its significance in extracting advanced human movement feature expressions and automating the assessment of functional movement screening.

A Simplified Analysis Method for Seismic Response of Pile Foundation

A simplified analysis method based on three-dimensional finite element analysis is proposed for the dynamic response of pile foundations under the action of vertically propagating SV waves. This method considers the impact of upper structure inertia force and free field deformation on the internal force of the pile separately. The former is considered using the Equivalent Base Shear Method, while the latter is analyzed using a finite element response acceleration method for underground structures. This study selected three seismic waves and their average values as loads to calculate the dynamic response of pile raft foundations. Through trial calculations, the seismic effect reduction coefficient range (0.35–0.4) of the representative values of the horizontal seismic inertia force corresponding to the upper structure was obtained. The error between the peak shear stress of the pile top obtained by the quasi-static method and the time history analysis results was less than 10%. The research results indicate that the proposed simplified analysis method can accurately obtain the peak shear stress and its distribution pattern of the pile body under horizontal seismic action while significantly improving the analysis efficiency. This method has high accuracy and efficiency in conducting seismic design comparison and analysis of multiple foundation schemes.

Conspicuous stripes on prey capture attention and reduce attacks by foraging jumping spiders.

Many animals avoid predation using aposematic displays that pair toxic/dangerous defences with conspicuous achromatic warning patterns, such as high-contrast stripes. To understand how these prey defences work, we need to understand the decision-making of visual predators. Here we gave two species of jumping spiders (Phidippus regius and Habronattus trimaculatus) choice tests using live termites that had their back patterns manipulated using paper capes (solid white, solid black, striped). For P. regius, black and striped termites were quicker to capture attention. Yet despite this increased attention, striped termites were attacked at lower rates than either white or black. This suggests that the termite's contrast with the background elicits attention, but the internal striped body patterning reduces attacks. Results from tests with H. trimaculatus were qualitatively similar but did not meet the threshold for statistical significance. Additional exploratory analyses suggest that attention to and aversion to stripes is at least partially innate and provide further insight into how decision-making played out during trials. Because of their rich diversity (over 6500 species) that includes variation in natural history, toxin susceptibility and degree of colour vision, jumping spiders are well suited to test broad generalizations about how and why aposematic displays work.

P120 Refining MRI pattern in sarcoglycanopathies: upper body pattern and new approaches to assess disease progression

P120 Refining MRI pattern in sarcoglycanopathies: upper body pattern and new approaches to assess disease progression

Assessing Negative Welfare Measures for Wild Invertebrates: The Case for Octopuses.

Welfare metrics have been established for octopuses in the laboratory, but not for octopuses living in the wild. Wild octopuses are constantly exposed to potentially harmful situations, and the ability to assess the welfare status of wild octopuses could provide pertinent information about individuals' health and species' resilience to stressors. Here, we used underwater photos and videos to identify injuries and stress-related behaviors in wild Octopus insularis in a variety of contexts, including interacting with fishermen, interacting with other octopuses and fish, proximity to predators, in den, foraging, and in senescence. We adapted established metrics of octopus welfare from the laboratory to these wild octopuses. In addition to observing all of the stress measures, we also identified two previously unknown measures associated with decreased welfare: (1) a half white eye flash and (2) a half-and-half blotch body pattern. More than half of the individuals analyzed had arm loss, and almost half of the individuals had skin injuries. We also observed that irregular chromatophore expression and abnormal motor coordination were associated with interactions with fishermen. This is the first study to apply measures of welfare from the laboratory to wild octopuses. Our results may also aid in the identification of welfare measures for other wild invertebrates.

Automatic generation of parametric patterns from grading patterns using artificial intelligence

PurposeThis study aims to automate the process of converting grading patterns into parametric patterns using artificial intelligence and to objectively evaluate the fitness of the converted patterns.Design/methodology/approachThe developed system consists of a user interface that defines input data by importing multi-size grading patterns, an artificial neural network that learns the relationship between human body size and pattern geometry, and a module that converts training results into parametric patterns. In order to evaluate the fitness of the generated pattern, an objective fitting evaluation method using drape simulation was developed.FindingsThe body sizes of the wearer were input to the converted parametric pattern to generate a customized pattern. Resulting pattern showed a better fit than the grading pattern on the off-average body model.Research limitations/implicationsIn this study, a method has been developed that enables the users with minimal pattern drafting knowledge to convert grading patterns into parametric patterns using artificial intelligence and drape simulation. The human body's symmetry and the physical properties of fabric were not considered.Originality/valueThe system developed in this study requires less data compared to existing methods that attempt to design clothing patterns with machine learning. In addition, it was possible to evaluate pattern fitness on various body models through drape simulation based fit evaluation process for the first time.

The gastropod Lottia peitaihoensis as a model to study the body patterning of trochophore larvae.

The body patterning of trochophore larvae is important for understanding spiralian evolution and the origin of the bilateral body plan. However, considerable variations are observed among spiralian lineages, which have adopted varied strategies to develop trochophore larvae or even omit a trochophore stage. Some spiralians, such as patellogastropod mollusks, are suggested to exhibit ancestral traits by producing equal-cleaving fertilized eggs and possessing "typical" trochophore larvae. In recent years, we developed a potential model system using the patellogastropod Lottia peitaihoensis (= Lottia goshimai). Here, we introduce how the species were selected and establish sources and techniques, including gene knockdown, ectopic gene expression, and genome editing. Investigations on this species reveal essential aspects of trochophore body patterning, including organizer signaling, molecular and cellular processes connecting the various developmental functions of the organizer, the specification and behaviors of the endomesoderm and ectomesoderm, and the characteristic dorsoventral decoupling of Hox expression. These findings enrich the knowledge of trochophore body patterning and have important implications regarding the evolution of spiralians as well as bilateral body plans.

The Transcription Factor HOXA5: Novel Insights into Metabolic Diseases and Adipose Tissue Dysfunction.

The transcription factor HOXA5, from the HOX gene family, has long been studied due to its critical role in physiological activities in normal cells, such as organ development and body patterning, and pathological activities in cancer cells. Nonetheless, recent evidence supports the hypothesis of a role for HOXA5 in metabolic diseases, particularly in obesity and type 2 diabetes (T2D). In line with the current opinion that adipocyte and adipose tissue (AT) dysfunction belong to the group of primary defects in obesity, linking this condition to an increased risk of insulin resistance (IR) and T2D, the HOXA5 gene has been shown to regulate adipocyte function and AT remodeling both in humans and mice. Epigenetics adds complexity to HOXA5 gene regulation in metabolic diseases. Indeed, epigenetic mechanisms, specifically DNA methylation, influence the dynamic HOXA5 expression profile. In human AT, the DNA methylation profile at the HOXA5 gene is associated with hypertrophic obesity and an increased risk of developing T2D. Thus, an inappropriate HOXA5 gene expression may be a mechanism causing or maintaining an impaired AT function in obesity and potentially linking obesity to its associated disorders. In this review, we integrate the current evidence about the involvement of HOXA5 in regulating AT function, as well as its association with the pathogenesis of obesity and T2D. We also summarize the current knowledge on the role of DNA methylation in controlling HOXA5 expression. Moreover, considering the susceptibility of epigenetic changes to reversal through targeted interventions, we discuss the potential therapeutic value of targeting HOXA5 DNA methylation changes in the treatment of metabolic diseases.

Evolutionary genomics of camouflage innovation in the orchid mantis

The orchid mantises achieve camouflage with morphological modifications in body color and pattern, providing an interesting model for understanding phenotypic innovation. However, a reference genome is lacking for the order Mantodea. To unveil the mechanisms of plant-mimicking body coloration and patterns, we performed de novo assembly of two chromosome-level genomes of the orchid mantis and its close relative, the dead leaf mantis. Comparative genomic analysis revealed that the Scarlet gene plays an important role in the synthesis of xanthommatin, an important pigment for mantis camouflage coloration. Combining developmental transcriptomic analysis and genetic engineering experiments, we found that the cuticle was an essential component of the ‘petal-like’ enlargement, and specific expression in the ventral femur was controlled by Wnt signaling. The prolonged expression of Ultrabithorax (Ubx) accompanied by femoral expansion suggested that Ubx determines leg remodeling in the early developmental stage. We also found evidence of evolution of the Trypsin gene family for insectivory adaptation and ecdysone-dependent sexual dimorphism in body size. Overall, our study presents new genome catalogs and reveals the genetic and evolutionary mechanisms underlying the unique camouflage of the praying mantis, providing evolutionary developmental insights into phenotypic innovation and adaptation.

Can you feel the rhythm? Comparing vibrotactile and auditory stimuli in the rhythm video game Jump‘n'Rhythm

ABSTRACT Rhythm is essential in early music education. To acquire rhythm abilities, the synchronisation between body and rhythm patterns is fundamental. Extensive research has shown the link between the auditory-motor system and rhythm acquisition; however, other sensorimotor systems also improve rhythm skills. Rhythm acquisition can be trained using new technologies, such as video games; however, most of these use mainly auditory stimuli to improve it. Therefore, in this work, we explore tactile stimuli to improve rhythm skills using a video game and how visual elements affect rhythm perception using different stimuli. We evaluate and compare the synchronisation of 27 participants following either vibrotactile or auditory stimuli emitted through a rhythm video game in two difficulty levels and we evaluated the user experience. Consistent with the literature, our results indicate that participants synchronised slightly better using auditory than vibrotactile stimuli and players’ performance was better when they had visual guides. A fatigue effect persisted and increased over playtime in both conditions. In the current study, usability measures indicate no significant differences. These findings suggest that vibrotactile stimuli are also suitable to train rhythm skills in a video game environment and the game-elements play an important role in players' performance.

Cup is essential for oskar mRNA translational repression during early Drosophila oogenesis

ABSTRACT Study of the timing and location for mRNA translation across model systems has begun to shed light on molecular events fundamental to such processes as intercellular communication, morphogenesis, and body pattern formation. In D. melanogaster, the posterior mRNA determinant, oskar, is transcribed maternally but translated only when properly localized at the oocyte’s posterior cortex. Two effector proteins, Bruno1 and Cup, mediate steps of oskar mRNA regulation. The current model in the field identifies Bruno1 as necessary for Cup’s recruitment to oskar mRNA and indispensable for oskar’s translational repression. We now report that this Bruno1-Cup interaction leads to precise oskar mRNA regulation during early oogenesis and, importantly, the two proteins mutually influence each other’s mRNA expression and protein distribution in the egg chamber. We show that these factors stably associate with oskar mRNA in vivo. Cup associates with oskar mRNA without Bruno1, while surprisingly Bruno1’s stable association with oskar mRNA depends on Cup. We demonstrate that the essential factor for oskar mRNA repression in early oogenesis is Cup, not Bruno1. Furthermore, we find that Cup is a key P-body component that maintains functional P-body morphology during oogenesis and is necessary for oskar mRNA’s association with P-bodies. Therefore, Cup drives the translational repression and stability of oskar mRNA. These experimental results point to a regulatory feedback loop between Bruno 1 and Cup in early oogenesis that appears crucial for oskar mRNA to reach the posterior pole and its expression in the egg chamber for accurate embryo development.

Understanding locomotion in trilobites by means of three-dimensional models

Trilobites were one of the first animals on Earth to leave their imprints on the seafloor. Such imprints represent behavioral traces related to feeding or protection, in both cases implying different types of locomotion. Modeling how trilobites moved is essential to understand their evolutionary history and ecological impact on marine substrates. Herein, locomotion in trilobites is approached by means of three-dimensional models, which yielded two main gait types. These two gaits reflect basic behaviors: burrowing and walking. This model reveals that trilobites could change their gait and consequently increase rapidly their speed varying the amplitude of the metachronal wave, a change independent from their biological structure. Fast increases in speed enhanced the protection of trilobites against predators and sudden environmental crises. The trilobite body pattern constrained their gaits, controlled by the distance between the pair of legs and between legs in a same segment.

Coupling Relationships between Sedimentary Microfacies, Sand Bodies, and Tectonic Fracture Characteristics in Braided River Deltas: A Case Study of the Bashijiqike Formation in the Keshen 2 Area

Fractures are crucial as main natural gas transport channels in tight sandstone reservoirs. In order to reveal the correlation between the combination of fractures in Block Keshen 2 and sandstone, we have collected drilling core data, logging curve data, imaging logging data, and rock thin-section data from the Bashjiqike Formation in the Keshen 2 area, and by classifying and statistically analyzing the different influencing factors of fractures, we have established a correlation between the development of fractures and sandstone thickness, lithology, and sedimentary microfacies. The results reveal the following: (1) frequent vertical superposition and lateral migration occur in the sedimentary sand bodies of the Bashijiqike Formation. Three types of patterns of sand bodies have been identified according to the changes in microfacies. Type I refers to the patterns of sand bodies developed in main subaqueous distributary channels, type II refers to the patterns of sand bodies developed in secondary subaqueous distributary channels or mouth bars, and type III refers to the patterns of sand bodies developed in isolated subaqueous distributary channels; (2) three types of fracture patterns have been described in the various sand bodies of the Bashijiqike Formation in the Keshen area, including high–medium-angle branch-like fracture patterns, medium-angle reticular fracture patterns, and isolated fractures; (3) the coupling relationship among sedimentary microfacies, sand body patterns, and fracture patterns has been established. The high–medium-angle branch-like fracture patterns mainly develop in the main underwater distributary channel and the type I sand body patterns. The medium-angle reticular fracture patterns mainly develop in the secondary underwater distributary channel and mouth bars, as well as the type II sand body patterns. Isolated fractures can occur in all sedimentary microfacies but are sporadically distributed within the three types of sand body patterns. The research results present the regularity of fracture development in fractured reservoirs, which can be applied to oil and gas fields with the same background, providing certain geological evidence for exploration and development.

Genetic confirmation of Octopus insularis (Leite and Haimovici, 2008) in South Florida, United States using physical features and de novo genome assembly.

The distribution of octopuses within the Octopus vulgaris species complex remains inadequately understood. Species determination can be complex and involves characterizing a specimen's physical features and comparing its genetic makeup to other populations. In this study, we present the first genetic confirmation of Octopus insularis (Leite and Haimovici, 2008) inhabiting the coastal waters of the Florida Keys, United States. We employed visual observations to identify species-specific body patterns of three wild-caught octopuses and used de novo genome assembly to confirm their species. All three specimens exhibited a red/white reticulated pattern on their ventral arm surface. Two specimens displayed body pattern components of deimatic display (white eye encircled by a light ring, with darkening around the eye). All visual observations were consistent with distinguishing features of O. insularis. We then compared mitochondrial subunits COI, COIII, and 16S in these specimens across all available annotated octopod sequences, including Sepia apama (Hotaling et al., 2021) as a control outgroup taxon. For species exhibiting intraspecific genomic variation, we included multiple sequences from geographically distinct populations. Laboratory specimens consistently clustered into a single taxonomic node with O. insularis. These findings confirm O. insularis presence in South Florida and suggest a more extensive northern distribution than previously assumed. Whole genome Illumina sequencing of multiple specimens enabled taxonomic identification with well-established DNA barcodes while also generating the first de novo full assembly of O. insularis. Furthermore, constructing and comparing phylogenetic trees for multiple conserved genes is essential for confirming the presence and delineation of cryptic species in the Caribbean.

HOXA3 accelerates wound healing in diabetic and aged non-diabetic mammals

Chronic wounds are characterized by a persistent, hyper-inflammatory environment that prevents progression to regenerative wound closure. Such chronic wounds are especially common in diabetic patients, often requiring distal limb amputation, but occur in non-diabetic, elderly patients as well. Induced expression of HoxA3, a member of the Homeobox family of body patterning and master regulatory transcription factors, has been shown to accelerate wound closure in diabetic mice when applied topically as a plasmid encased in a hydrogel. We now provide independent replication of those foundational in vivo diabetic wound closure studies, observing 16% faster healing (3.3 mm wounds vs 3.9 mm wounds at Day 9 post original injury of 6 mm diameter) under treatment with observable microscopic benefits. We then expand upon these findings with minimal dose threshold estimation of 1 μg HoxA3 plasmid delivered topically at a weekly interval. Furthermore, we observed similarities in natural wound healing rates between aged non-diabetic mice and young diabetic mice, which provided motivation to test topical HoxA3 plasmid in aged non-diabetic mice. We observed that HoxA3 treatment achieved complete wound closure (0 mm diameter) at 2 weeks whereas untreated wounds were only 50% closed (3 mm wound diameter). We did not observe any gross adverse effects macroscopically or via histology in these short studies. Whether as a plasmid or future alternative modality, topical HoxA3 is an attractive translational candidate for chronic wounds.

FoxA2 is a reliable marker for the diagnosis of yolk sac tumour postpubertal-type.

Yolk sac tumour postpubertal-type (YSTpt) shows a wide range of histological patterns and is challenging to diagnose. Recently, forkhead box transcription factor A2 (FoxA2) emerged as a driver of YSTpt formation and a promising marker for diagnosing YSTpt. However, FoxA2 has not been tested in the different patterns of YSTpt. This study aimed to assess the staining pattern of FoxA2 in te different patterns of YSTpt and other germ cell tumours of the testis (GCTT), comparing it with glypican-3 (GPC3) and α-fetoprotein (AFP). FOXA2, GPC3 and AFP immunohistochemistry was performed on 24 YSTpt (24 microcystic/reticular, 10 myxoid, two macrocystic, five glandular/alveolar, two endodermal sinus/perivascular, four solid, two polyembryoma/embryoid body and two polyvesicular vitelline) and 81 other GCTT. The percentage of positive cells (0, 1+, 2+, 3+) and the intensity (0, 1, 2, 3) were evaluated regardless of and within each YSTpt pattern. FoxA2 was positive in all YSTpt (24 of 24) and all but one (23 of 24) exhibited 2+/3+ stain, with higher intensity [median value (mv): 2.6] than AFP (1.8) and GPC3 (2.5). Both FoxA2 and GPC3 were positive in all microcystic/reticular (24 of 24), myxoid (10 of 10), macrocystic (two of two), endodermal sinus/perivascular (four of four) and polyembryoma/embryoid body (two of two) patterns. Nevertheless, only FoxA2 was positive in all glandular/alveolar (five of five), solid (four of four) and polyvesicular vitelline (two of two) patterns. The intensity of FoxA2 was higher than AFP and GPC3 in almost all YST patterns. In the other GCTT, FoxA2 was positive only in teratoma postpubertal-type (Tpt) [13 of 20 (65%)], with staining almost exclusively confined to the mature gastrointestinal/respiratory tract epithelium. FoxA2 is a highly sensitive and specific biomarker that supports the diagnosis of YSTpt. FoxA2 is superior to GPC3 and AFP, especially in rare and difficult-to-diagnose histological patterns of YSTpt, but mature glands of Tpt could represent a potential diagnostic pitfall.

People's psychological and physiological responses to the combined smell-thermal environments

Both smell and thermal sensation are important sensory modalities for the human body. To reveal the adaptation pattern of the human body in complex environments and improve the quality of the human living environment, it is important to study the compound mechanisms of olfactory and thermal sensations on people's psychological perception and physiological indicators. In this study, three olfactory environment variables (peppermint, Homalomena occulta, and dried ginger) and three thermal environment variables (16 °C, 20 °C, and 24 °C) were selected, and the psychological and physiological data were obtained from 24 healthy subjects. The results showed that both the olfactory and thermal environments had effects on thermal sensation, thermal comfort, and total comfort (p < 0.05). The olfactory environment (η2 = 0.126) had a more significant effect on the total comfort when compared with the thermal environment (η2 = 0.029), while the thermal environment did not have a significant effect on the odour comfort. In addition, the thermal environment was found to have a significant effect on the skin temperature, heart rate, and blood pressure indicators, while the olfactory environment had no significant effects. This study suggests that the olfactory environment has more influence on the subjective perception of the human body than the thermal environment, but it does not directly affect the physiological indicators, while the thermal environment has some influence on the psychological perception and physiological indicators. Therefore, by creating an olfactory environment, it could be possible to improve environmental comfort.

Effects of Environmental Enrichment on the Behavior of Octopus vulgaris in a Recirculating Aquaculture System.

Octopus vulgaris is a commercially valuable species. It is overexploited in the natural environment and is considered to be an innovative species for aquaculture. However, large-scale farming is generally designed only based on economic requirements, disregarding any form of enrichment that induces the natural behavior of aquatic species. Although many studies have shown the influence of environmental enrichment on terrestrial vertebrates, fish, and cephalopod mollusks, information on the effect of environmental enrichment on the body patterns of O. vulgaris is limited. Therefore, in this study, we assessed how different environmental conditions (Basic vs. Enriched) affect sub-adults of O. vulgaris kept in recirculation systems, through qualitative-quantitative studies of the main body patterns and their potential application in the commercial production of this species. The results indicated that octopuses kept in the enriched environment showed several body patterns and gained a significantly higher weight than those kept in the basic environment. The body patterns displayed by the individuals kept in the basic environment were similar to those exhibited under situations of hostility and inter/intra-specific conflict. Hence, the environment of octopuses needs to be enriched, especially for the large-scale production of this species.