Continuous high-resolution surface water pCO2 and δ13C-CO2 and 222Rn (dry season only) were measured over two tidal cycles in the wet and dry season in three tropical tidal mangrove creeks on the north-eastern coast of Queensland, Australia. Mangrove surface water pCO2 followed a clear tidal pattern (ranging from 387 to 13,031 µatm) with higher pCO2-values in the wet season than in the dry season. The δ13C-CO2 in the mangrove waters ranged from −21.7 to −8.8‰ and was rather indicative of a mixed source than a distinct mangrove signature. Surface water CO2 was likely driven by a combination of mangrove and external carbon sources, e.g. exchange with groundwater/pore water enriched in 13C, or terrestrial carbon inputs with a significant contribution of C4-vegetation (sugar cane) source. The kinetic and equilibrium fractionation during the gas exchange at the water-atmosphere interface may have further caused a 13C-enrichment of the CO2 pool in the mangrove surface waters. Average CO2 evasion rates (58.7–277.6 mmol m−2 d−1) were calculated using different empirical gas transfer velocity models. Using our high-resolution time series data and previously published data, the average CO2 flux rate in mangrove ecosystems was estimated to be 56.5 ± 8.9 mmol m−2 d−1, which corresponds to a revised global mangrove CO2 emission of 34.1 ± 5.4 Tg C per year.