Patterns Of Selection Research Articles

Data Envelopment Analysis-based Scenario Selection for Sequencing Pattern in a Simulated Robotic Cell

In this study, the performance of suggested scenarios for part input sequences in a 3-machine robotic cell producing different parts is determined through the application of data envelopment analysis (DEA) and the Banker–Charnes–Cooper model. A single gripper robot supports the manufacturing process by loading and unloading products and moving them inside the system. This study addresses random machine failures and repairs to minimize cycle time based on two robot move cycles in a three-machine robotic cell and overall production costs. Here, simulation assists in the modeling of uncertainty and a simulation-based optimization approach is applied to find the best scenarios for sequencing patterns in the cell through several numerical examples using DEA. The results displayed that, efficient scenarios satisfying minimum time and cost, are those, in which the percentages of operations assigned to the machines are close to each other. This enables decision-makers in manufacturing systems to make precise selections of the optimal part sequencing pattern with the lowest production cost and cycle time for robotic cells.

Pattern dynamics in a predator–prey model with Smith growth function and prey refuge in predator poisoned environment

In this article, we investigate temporal as well as spatiotemporal dynamics of a predator–prey system where prey grows according to Smith growth function and prey refuges in predator poisoned environment. Self as well as cross diffusion are taken into consideration to describe spatial moment of the species which make the system more realistic. This study aims to investigate the role of prey refuge, toxin-carrying carcass and the impact of cross-diffusion on the spatial distribution of species densities and associated patterns. The existence of equilibria and their stability conditions for non-spatial system are derived. We discuss the occurrence of Hopf bifurcation and detect the stability of limit cycle by computing first Lyapunov number. Temporal dynamics of the system is studied by varying the significant parameters. Study reveals that both prey refuge and fatality rate of predator due to toxin-carrying carcass, initially makes the system stable for low refuge and fatality rate but predator population goes to extinction as those effects increase. Turing instability conditions are listed and different instability regions so formed are discussed. In Turing region, pattern selection with the help of amplitude equation via weakly nonlinear analysis are performed which also numerically supported. Intensity of refuge and fatality rate due to toxin carrying carcass result paradox with real ecological world due to the presence of cross diffusion. Various kind of patterns such as mixture of stripe and spot, spot, irregular chaotic patterns emerge due to Hopf and Turing instability. Particularly, spatiotemporal chaos is a controversial topic because of its significant consequences for population dynamics. The results of this work are expected to contribute to a better understanding the level of prey refuge, use of toxin-carrying carcass considering movement in population and effect of cross-diffusion.

Linking divergence in phenotypic selection on floral traits to divergence in local pollinator assemblages in a pollination-generalized plant.

Divergent patterns of phenotypic selection on floral traits can arise in response to interactions with functionally distinct pollinators. However, there are a limited number of studies that relate patterns of phenotypic selection on floral traits to variation in local pollinator assemblages in pollination-generalized plant species. We studied phenotypic selection on floral traits of Viscaria vulgaris, a plant that interacts with a broad range of diurnal and nocturnal pollinators, and related divergence in phenotypic selection on floral traits to the expected level of divergence in local pollinator assemblages. We detected phenotypic selection on floral traits involved in the attraction of pollinators and the mechanics of pollen removal and deposition, and demonstrated that floral traits are subject to spatiotemporal variation in the strength and direction of phenotypic selection. We revealed that diurnal and nocturnal pollinators, when considered in isolation, mediated divergent patterns of phenotypic selection on floral traits. Consistent with the Grant-Stebbins model, we observed that divergence in phenotypic selection on floral traits increased with the expected level of divergence in local pollinator assemblages. Thus, generalized plant-pollinator interactions can mediate phenotypic selection on floral traits and distinct local pollinator assemblages can generate a geographic mosaic of divergent patterns of phenotypic selection. We underscore that these outcomes are not exclusive to specialized plant-pollinator interactions and can emerge at a local geographic scale.

Seeking a multi‐dimensional approach to understand agricultural commodity expansion in Asian tropics

AbstractAgricultural commodity expansion into natural and semi‐natural ecosystems in Asia is a multi‐dimensional sustainability challenge posing a threat to natural and human capital. At the symposium pertaining to agricultural commodity landscapes organized at the 59th meeting of the Association for Tropical Biology and Conservation, we aimed to identify key aspects that require further attention to address the negative impacts of commodity‐driven agricultural expansion in the Asian tropics. Using a combination of insights obtained both from participants' research and those that developed organically in the symposium, we identified five key themes: (1) Robust land use suitability assessments to determine the viability of agricultural expansion or other competing demands on productive land in given landscapes; (2) the need for plot‐level studies of soil biodiversity and ecological functions for commodity crops; (3) Irrigation for commodity crops with blue and green water and evaluating co‐dependent drivers and outcomes; (4) an improved understanding of local producer motivations and supply chains and (5) the analysis of co‐benefits, trade‐offs and synergies in agro‐commodity systems. These themes include the various steps involved in agricultural commodity expansion, right from land selection and crop patterns to aspects pertaining to the post‐harvest value chain. These themes are inter‐connected and span across multiple local and regional spatial scales in tropical Asia but hold relevance to agricultural landscapes elsewhere too. Immediate and sustained attention on these themes would secure multiple goals of sustainable land use, biodiversity conservation, climate change mitigation and human well‐being.

Sensitive Coatings Based on Molecular-Imprinted Polymers for Triazine Pesticides' Detection.

Triazine pesticide (atrazine and its derivatives) detection sensors have been developed to thoroughly check for the presence of these chemicals and ultimately prevent their exposure to humans. Sensitive coatings were designed by utilizing molecular imprinting technology, which aims to create artificial receptors for the detection of chlorotriazine pesticides with gravimetric transducers. Initially, imprinted polymers were developed, using acrylate and methacrylate monomers containing hydrophilic and hydrophobic side chains, specifically for atrazine, which shares a basic heterocyclic triazine structure with its structural analogs. By adjusting the ratio of the acid to the cross-linker and introducing acrylate ester as a copolymer, optimal non-covalent interactions were achieved with the hydrophobic core of triazine molecules and their amino groups. A maximum sensor response of 546 Hz (frequency shift/layer height equal to 87.36) was observed for a sensitive coating composed of 46% methacrylic acid and 54% ethylene glycol dimethacrylate, with a demonstrated layer height of 250 nm (6.25 kHz). The molecularly imprinted copolymer demonstrated fully reversible sensor responses, not only for atrazine but also for its metabolites, like des-ethyl atrazine, and structural analogs, such as propazine and terbuthylazine. The efficiency of modified molecularly imprinted polymers for targeted analytes was tested by combining them with a universally applicable quartz crystal microbalance transducer. The stable selectivity pattern of the developed sensor provides an excellent basis for a pattern recognition procedure.

Geometrical incompatibility regulated pattern selection and morphological evolution in growing spherical soft tissues

Surface morphological patterns are widely observed in natural systems, which are closely correlated to vital biological functions and inspire surface morphology designs in soft matter systems. Geometrical incompatibility widely exists in biological tissues across different length scales and plays an important role in growth-induced pattern selection and morphological evolution of soft tissues. However, the underlying physical mechanism of growth-induced pattern formation and post-buckling evolution in geometrically incompatible spherical soft tissues remain elusive. Here, the effect of geometrical incompatibility on the growth-induced pattern selection and post-buckling evolution are investigated through swelling experiment, theoretical analysis and numerical simulation. The results show that not only the instability pattern but also the instability threshold can be regulated by manipulating geometric incompatibility. Notably, when the geometrical incompatibility parameter exceeds a critical value, spontaneous instability is observed before growth. With continuous growth, the core–shell soft sphere buckles into a periodic buckyball pattern and evolves toward a bean-shaped pattern, and then undergoes a wrinkle-to-fold transition into a labyrinth topography. Our results demonstrate, both experimentally and theoretically, that geometrical incompatibility can guide the growth-induced pattern formation and morphological evolution effectively. This study not only enhances our understanding of the growth-induced pattern selection and morphological evolution in spherical soft tissues, but also provides an inspiring insight for the fabrication of morphological patterns on curved surfaces.

Positive Selection Drives the Evolution of the Structural Maintenance of Chromosomes (SMC) Complexes.

Structural Maintenance of Chromosomes (SMC) complexes are an evolutionary conserved protein family. In most eukaryotes, three SMC complexes have been characterized, as follows: cohesin, condensin, and SMC5/6 complexes. These complexes are involved in a plethora of functions, and defects in SMC genes can lead to an increased risk of chromosomal abnormalities, infertility, and cancer. To investigate the evolution of SMC complex genes in mammals, we analyzed their selective patterns in an extended phylogeny. Signals of positive selection were identified for condensin NCAPG, for two SMC5/6 complex genes (SMC5 and NSMCE4A), and for all cohesin genes with almost exclusive meiotic expression (RAD21L1, REC8, SMC1B, and STAG3). For the latter, evolutionary rates correlate with expression during female meiosis, and most positively selected sites fall in intrinsically disordered regions (IDRs). Our results support growing evidence that IDRs are fast evolving, and that they most likely contribute to adaptation through modulation of phase separation. We suggest that the natural selection signals identified in SMC complexes may be the result of different selective pressures: a host-pathogen arms race in the condensin and SMC5/6 complexes, and an intragenomic conflict for meiotic cohesin genes that is similar to that described for centromeres and telomeres.

Short-term fluctuating and long-term divergent selection on sympatric Monkeyflowers: insights from decade-spanning reciprocal transplants.

Sympatric species are often locally adapted to distinct microhabitats. However, temporal variation may cause local maladaptation and species boundary breakdown, especially during extreme climatic events leading to episodic selection. Repeated reciprocal transplants can reveal the interplay between short and long-term patterns of natural selection. To examine evolutionary trajectories of sympatric Monkeyflowers adapted to different niches, Mimulus guttatus and M. laciniatus, we performed three replicated transplants and combined them with previous experiments to leverage a dataset of five transplants spanning 10 years. We performed phenotypic selection analyses on parents and hybrids in parental habitats in Yosemite NP, CA during years of drastically differing snowpack. If there is ecological isolation, then we predicted divergent phenotypic selection between habitats in line with species' differences and local adaptation. We found interannual fluctuations in phenotypic selection, often in unpredicted directions. However, a combined-year analysis detected longer-term divergent selection on flowering time, a key temporally isolating and adaptative trait, suggesting that selection may reinforce species boundaries despite short-term fluctuations. Finally, we found temporal variation in local adaptation with M. laciniatus locally adapted in low snowpack years, while an extremely high snowpack year contributed to average local maladaptation of M. guttatus.

Management of retinal diseases, therapeutic association between ophthalmology and endocrinology in the treatment of diabetic retinopathy

Introduction: Effective management of retinal diseases, especially diabetic retinopathy, is crucial for preventing severe visual complications. Collaboration between ophthalmologists and endocrinologists plays a fundamental role in the effective treatment of this condition, aiming to preserve vision and improve patients' quality of life. Methods: A bibliographic review was conducted to understand the management of retinal diseases and the therapeutic association between ophthalmology and endocrinology in the treatment of diabetic retinopathy. We used databases such as MEDLINE, PubMed, and Scielo to identify relevant articles published in the last 20 years. Inclusion and exclusion criteria were defined to ensure the selection of pertinent studies. Results: After the search and selection of articles, patterns and trends in the management of diabetic retinopathy were identified. A variety of treatment options were located, including laser photocoagulation, intravitreal injections of medications, and vitreoretinal surgery. The importance of metabolic control of diabetes to prevent retinal damage was noted. The analysis of the studies also highlighted that the interaction between these specialties ensures better clinical outcomes. Conclusion: The importance of collaboration between ophthalmologists and endocrinologists in the management of diabetic retinopathy is reinforced. An integrated approach that considers both ophthalmological and endocrinological aspects of the disease is essential to provide effective care to patients. This cooperation can result in better visual outcomes and quality of life for those affected by diabetic retinopathy.

Evolutionary selection and morphological integration in the hand of modern humans.

To enhance our understanding of the evolutionary dynamics of the modern human hand by analyzing the degree of integration and ability to respond to selection pressures of each phalanx and metacarpal bone. The sample comprised 96 adult individuals, both female and male, from Euro-American, Afro-American, and European populations. We collected 10 linear measurements from the 19 metacarpals and proximal, middle, and distal phalanges that constitute the five digits of the hand. Using these data, we constructed variance/covariance matrices to quantify the degree of integration and assess the hand ability to respond to selective pressures. Distal phalanges are the most evolvable and flexible elements, while being the least integrated and constrained. The thumb is similarly integrated as the second and third rays, while medial rays (fourth and fifth digits) are more integrated. However, the thumb presents different integration and response to selection patterns. No significant relationship was found between functionality and the indices of selection and integration. Finally, the correlation between hand and foot indices yielded significant results for conditional evolvability and flexibility. The findings suggest different evolutionary trajectories for the metacarpal and distal phalanx in the modern human thumb, likely reflecting varying functional and developmental pressures. The first metacarpal, characterized by high flexibility and low evolvability, appears to have reached a stable, optimal morphology, under stabilizing selection. In contrast, the distal phalanx seems to have undergone directional evolution, suggesting specialization for a specific function. Comparisons between hands and feet suggest that these structures evolve differently under directional selection but similarly under stabilizing selection.

Fracture strain improving via structural austenitic stainless steel-coated 22MnB5 plates

A total of 316 austenitic stainless steel (ASS) coatings were deposited on 22MnB5 press-hardening steel plates by varying the substrate bias voltages using a magnetron sputtering technique and quenched in a flat mold with cooling water. The substrate bias current and ion-bombardment energy densities increased up to 0.5 mA/mm2 and 50 J/mm2 at a high voltage of −100 V, and, therefore, the variations in the coatings’ morphologies were owing to the increases in the ion bombardment. The porous bulk pattern appeared in the quenched ASS coating at −100 V, clearly different from the porous columnar structure of the others at −50 and −75 V. The γ-Fe and α-Fe phases were observed from the diffraction peaks, presented the ASS coating and 22MnB5 substrate, respectively. There was no intermetallic compound (IMC) peak detected. In addition, the diffusion layer of the quenched ASS-coated plate was observed, in which its morphology was different from the quenched martensite (M) plate, and proved to be the α-Fe microstructure by the very low α-Fe peak at the standard (110) position. The bright image of TEM and the select area electron diffraction pattern indicated the nanostructure of the quenched ASS coating. The nanohardness of the ASS coating, diffusion layer, and M plate (7.36, 3.60, and 6.25 GPa, respectively) was detected, indirectly proving an α-Fe structure of the diffusion layer. The fracture angles of the 316-coated plates significantly improved from 51.82° at −50 V, 53.77° at −75 V to 57.38° at −100 V, as the ASS structure changed to be porous bulk pattern. The clearance of IMC, coating’s porous bulk pattern, and the low hardness α-Fe diffusion layer benefited for the fracture strain by lengthening the pathway of the crack’s development and blocking the further crack’s propagation, respectively.

Mitochondrial genomes of Macropsini (Hemiptera: Cicadellidae: Eurymelinae): Structural features, codon usage patterns, and phylogenetic implications.

Macropsini is a tribe of Eurymelinae in the family Cicadellidae that is widely distributed worldwide. Still, its taxonomic status has been unstable, and the classification of certain clades at the genus level has been controversial. The aim of this study is to address the patterns and processes that explain the structure and the evolution of the mitogenomes of Macropsini, while contributing to the resolution of systematic issues involving five of their genera. To this task, the mitogenomes of 26 species of the tribe were sequenced and characterized, and their phylogenetic relationships were reconstructed. The results revealed that the nucleotide composition of mitochondrial genes in these 26 species was significantly skewed toward A and T. Codons ending with T or A in relative synonymous codon usage were significantly more prevalent than those ending with C or G. The parity plot, neutrality plot, and correspondence analysis revealed that mutation and selective pressure affect codon usage patterns. In the phylogenetic relationships of the Macropsini, the monophyly of Pedionis and Macropsis was well-supported. Meanwhile, Oncopsis revealed paraphyletic regarding Pediopsoides. In conclusion, this research not only contributes the valuable data to the understanding of the mitogenome of the Macropsini but also provides a reference for future investigations on codon usage patterns, potential adaptive evolution, and the phylogeny of the mitogenome within the subfamily Eurymelinae.

Singularity analysis for V‐notches in a piezoelectric multimaterial and functionally graded piezoelectric materials

AbstractThis study develops a novel singularity analysis method that addresses the limitations posed by piezoelectric material quantity and the variation patterns of property functions in functionally graded piezoelectric materials (FGPMs). Given that piezoelectric composite materials consist of multiple materials, the material properties of FGPMs vary with respect to angle. By introducing the asymptotic assumption that governs the physical fields close to the notch vertex into the static equilibrium equations, a comprehensive set of characteristic equations is formulated. All singularity orders and corresponding characteristic angle functions of the notch are determined by numerically solving the established characteristic equations. The effects of the notch opening angle, piezoelectric material polarization direction, and boundary conditions on the electromechanical field singularity at the notch are assessed. The judicious selection of material variation patterns can alleviate notch singularity in FGPMs.

Selection on genome-wide gene expression plasticity of rice in wet and dry field environments.

Gene expression can be highly plastic in response to environmental variation. However, we know little about how expression plasticity is shaped by natural selection and evolves in wild and domesticated species. We used genotypic selection analysis to characterize selection on drought-induced plasticity of over 7,500 leaf transcripts of 118 rice accessions (genotypes) from different environmental conditions grown in a field experiment. Gene expression plasticity was neutral for most gradually plastic transcripts, but transcripts with discrete patterns of expression showed stronger selection on expression plasticity. Whether plasticity was adaptive and co-gradient or maladaptive and counter-gradient varied among varietal groups. No transcripts that experienced selection for plasticity across environments showed selection against plasticity within environments, indicating a lack of evidence for costs of adaptive plasticity that may constrain its evolution. Selection on expression plasticity was influenced by degree of plasticity, transcript length and gene body methylation. We observed positive selection on plasticity of co-expression modules containing transcripts involved in photosynthesis, translation and responsiveness to abiotic stress. Taken together, these results indicate that patterns of selection on expression plasticity were context-dependent and likely associated with environmental conditions of varietal groups, but that the evolution of adaptive plasticity would likely not be constrained by opposing patterns of selection on plasticity within compared to across environments. These results offer a genome-wide view of patterns of selection and ecological constraints on gene expression plasticity and provide insights into the interplay between plastic and evolutionary responses to drought at the molecular level.

Able and willing: Infants selectively seek help from competent and benevolent others.

Young children often encounter unsolvable problems with which they require others' help. To receive adequate assistance, children must be savvy about whom they seek help from: Effective helpers must possess both the ability to help (e.g., competence) and a willingness to do so (e.g., benevolence). Although past work suggests that information about competence and benevolence can inform young children's help-seeking behavior, it remains unclear how and whether children utilize said factors independently of each other. Furthermore, it is unclear whether they can generalize potential helpers' competence from one task to another. The current experiments examined whether 22- to 23-month-olds confronted with a broken toy selectively sought help from agents who had previously demonstrated either competence (Experiment 1) or benevolence (Experiment 2). In Experiment 1, infants preferred to seek help from a competent agent who successfully opened a closed box over one who failed to do so. In Experiment 2, infants selectively sought help from a benevolent agent who helped a third party by returning a lost ball, over an agent who stole the ball instead. These patterns of selectivity were not driven by associative valence matching; in Experiment 3, infants showed no preference for an agent who was itself helped versus an agent who was hindered. These results suggest that before their second birthday, infants independently utilize cues to both competence and benevolence to inform their help seeking, using information generalized from novel contexts. We discuss the potential nature of this generalization as well as directions for future work. (PsycInfo Database Record (c) 2024 APA, all rights reserved).

Candida antartica lipase-catalyzed esterification for efficient partial acylglycerol synthesis in solvent-free system: Substrate selectivity, molecular modelling and optimization

Partial acylglycerols are valued for their emulsifying and stabilizing properties, yet precise green synthesis remains challenging due to low yield and selectivity. This study aimed to elucidate the “lipase selectivity-substrate structure-product composition” relationship to enhance the yield of targeted partial acylglycerol. The results showed that lipase exhibited a greater selectivity towards fatty acids with shorter chain lengths and higher unsaturation. Hydroxyl donors also affected the esterification process, with the enzyme-acyl complex exhibiting selectivity towards hydroxyl donors as follows: glycerol > monoacylglycerol > diacylglycerol. Substrate ratio significantly influenced enzymatic reactions; a 10:1 ratio favored triacylglycerol formation (>80 %), while a 1:1 ratio produced > 90 % partial acylglycerols. Molecular docking simulations revealed that substrates primarily interacted with lipase through hydrogen bonding and hydrophobic interactions. A comprehensive understanding of lipase selectivity patterns could facilitate the design of more efficient reaction systems, enabling the conversion of basic lipid resources into desired high value-added products.

Swordtail fish hybrids reveal that genome evolution is surprisingly predictable after initial hybridization.

Over the past 2 decades, biologists have come to appreciate that hybridization, or genetic exchange between distinct lineages, is remarkably common-not just in particular lineages but in taxonomic groups across the tree of life. As a result, the genomes of many modern species harbor regions inherited from related species. This observation has raised fundamental questions about the degree to which the genomic outcomes of hybridization are repeatable and the degree to which natural selection drives such repeatability. However, a lack of appropriate systems to answer these questions has limited empirical progress in this area. Here, we leverage independently formed hybrid populations between the swordtail fish Xiphophorus birchmanni and X. cortezi to address this fundamental question. We find that local ancestry in one hybrid population is remarkably predictive of local ancestry in another, demographically independent hybrid population. Applying newly developed methods, we can attribute much of this repeatability to strong selection in the earliest generations after initial hybridization. We complement these analyses with time-series data that demonstrates that ancestry at regions under selection has remained stable over the past approximately 40 generations of evolution. Finally, we compare our results to the well-studied X. birchmanni × X. malinche hybrid populations and conclude that deeper evolutionary divergence has resulted in stronger selection and higher repeatability in patterns of local ancestry in hybrids between X. birchmanni and X. cortezi.

Multivariate curve resolution-alternating least-squares and second-order advantage in first-order calibration. A systematic characterisation for three-component analytical systems

BackgroundRecent interest has been focused on the application of multivariate curve resolution-alternating least-squares (MCR-ALS) to systems involving the measurement of first-order and non-bilinear second-order data. The latter pose important challenges to bilinear decomposition models, due to the phenomenon of rotational ambiguity in the solutions, even under the application of the full set of chemical constraints that is usually employed in MCR-ALS calibration. ResultsAfter the analysis of several simulated and experimental datasets, important conclusions regarding the role of the selectivity patterns in the constituent spectra have been drawn concerning the achievement of the second-order advantage. Theoretical considerations based on the calculation of the areas of feasible solutions helped to support the observations regarding the predictive ability of MCR- ALS in the various datasets. SignificanceThe understanding of the impact of rotational ambiguity in obtaining the second-order advantage with both first-order and non-bilinear second-order data is of paramount importance in the future development of analytical protocols of complex samples.

Oral health-related patterns of food selectivity among French adults

Oral health-related patterns of food selectivity among French adults

Simulation analyses of the evolution of intra-inflorescence flowering patterns assuming selection on anthesis interval among individual flowers

What conditions select flowering patterns within inflorescences, or variation in the anthesis interval within inflorescences among plants? Under what conditions are gradual blooming and simultaneous blooming, both traits related to floral display size, advantageous? We constructed a simulation model in which the opening times and longevities of individual flowers within inflorescences, the sizes of attractive structures of individual flowers, and the numbers of ovules and pollen grains produced by individual flowers evolve. Individual plants in the population compete for pollinators, and plants are selected by pollinators according to their floral display sizes and amounts of resources allocated to attractive structures. We found that, if the proportion of pollen on a pollinator deposited on a stigma was low, gradual blooming did not evolve even if inbreeding depression was greater than 0.5. This is because the amount of outcross-pollen on pollinators decreased at a low rate during flower visits within a single inflorescence, and the selfing rate was suppressed to a low level even if the floral display size was large. On the other hand, if the proportion of pollen deposition was high, gradual blooming evolved even if inbreeding depression was smaller than 0.5. This may be because gradual blooming can enhance pollen delivery to other plants by reducing the loss of self-pollen by geitonogamy. On the other hand, allocation ratios among floral organs (female and male organs and attractive structures) were independent of the degree of simultaneous and gradual blooming within inflorescences. We concluded that the evolution of gradual blooming is more strongly affected by the proportion of pollen on a pollinator deposited on a stigma than by inbreeding depression.