Sequestration Pathway Research Articles

Acute toxicity of salicylic acid and its derivatives on the diatom Phaeodactylum tricornutum: Physico-Biochemical and transcriptomic insights

Salicylate pollutants (SAs) poses a serious threat to marine ecosystems as emerging contaminants. However, the toxic effects of SAs on marine phytoplankton, as well as the potential mechanisms and their ecological risks linked with them, are remain largely unknown. In this study, we aimed to evaluate the toxic effects of salicylic acid (SA) and its 5-substituted derivatives (5-sSA) on the marine diatom Phaeodactylum tricornutum, as well as the potential molecular mechanism involved in the toxicity. Physiological assays conducted on P. tricornutum revealed significant changes in photosynthetic pigments, chlorophyll fluorescence parameters, and antioxidant enzyme activities. The results showed that exposure of P. tricornutum to SAs caused a significant decline in chlorophyll contents and damage to the photosystem II (PSII) core resulting in the decline of photosynthesis. Although the activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) were enhanced, oxidative damage occurred. Transcriptome analysis showed that a large number of differentially expresses genes (DEGs) were significantly enriched in metabolic pathways such as porphyrin metabolism, terpenoid backbone biosynthesis, and carbon fixation in photosynthetic organisms after SA and 5-BrSA treatments. In addition, key genes in transcriptomic metabolic pathways were further analyzed and validated using weighted correlation network analysis (WGCNA) and real-time fluorescence quantitative PCR (qPCR). Considering the above results, SAs mainly inhibit the processes of photosynthesis by repressing the expression of genes involved in secondary metabolite synthesis and photosynthetic carbon sequestration pathways, thus exerting toxic effects on algal cells. The results of the study will provide key data for understanding the ecological risk and toxicity mechanisms of SA pollutants.

Organic matter is a predominant control on total mercury concentration of near-surface lake sediments across a boreal to low Arctic tundra transect in northern Canada

Mercury (Hg) is a bioavailable and toxic element with concentrations that are persistently high or rising in some Arctic and subarctic lakes despite reduced atmospheric emissions in North America. This is due to rising Hg emissions to the atmosphere outside of North America, enhanced sequestration of Hg to sediments by climate-mediated increases in primary production, and ongoing release of Hg from terrestrial reservoirs. To evaluate the influence of organic matter and other parameters on Hg accumulation in northern lakes, near-surface sediments were sampled from 60 lakes across a boreal to shrub tundra gradient in the central Northwest Territories, Canada. The organic matter of the lake sediments, assessed using programmed pyrolysis and petrology, is composed of a mixture of terrestrial, aquatic, and inert organic matter. The proportion of algal-derived organic matter is higher in sediments of lakes below treeline relative to shrub tundra sites. Total sedimentary Hg concentration is correlated to all organic matter constituents but is unrelated to latitude or lake position below or above treeline. The concentrations of Ag, Ca, P, S, U, Ti, Y, Cd, and Zn are also strong predictors of total sedimentary Hg concentration, indicating input from a common geogenic source and/or common sequestration pathways associated with organic matter. Catchment area is a strong negative predictor of total sedimentary Hg concentration, particularly in lakes above treeline, possibly due to retention capacity of Hg and other elements in local sinks. This research highlights the complexity of controls on Hg sequestration in sediment and shows that while organic matter is a strong predictor of total sedimentary Hg concentration on a landscape scale and across extreme gradients in climate and associated vegetation and permafrost, other factors such as catchment area and sources from mineralized bedrock are also important.

Carbon dioxide capture, sequestration, and utilization models for carbon management and transformation.

The elevated level of carbon dioxide in the atmosphere has become a pressing concern for environmental health due to its contribution to climate change and global warming. Simultaneously, the energy crisis is a significant issue for both developed and developing nations. In response to these challenges, carbon capture, sequestration, and utilization (CCSU) have emerged as promising solutions within the carbon-neutral bioenergy sector. Numerous technologies are available for CCSU including physical, chemical, and biological routes. The aim of this study is to explore the potential of CCSU technologies, specifically focusing on the use of microorganisms based on their well-established metabolic part. By investigating these biological pathways, we aim to develop sustainable strategies for climate management and biofuel production. One of the key novelties of this study lies in the utilization of microorganisms for CO2 fixation and conversion, offering a renewable and efficient method for addressing carbon emissions. Algae, with its high growth rate and lipid contents, exhibits CO2 fixation capabilities during photosynthesis. Similarly, methanogens have shown efficiency in converting CO2 to methane by methanogenesis, offering a viable pathway for carbon sequestration and energy production. In conclusion, our study highlights the importance of exploring biological pathways, which significantly reduce carbon emissions and move towards a more environmentally friendly future. The output of this review highlights the significant potential of CCSU models for future sustainability. Furthermore, this review has been intensified in the current agenda for reduction of CO2 at considerable extends with biofuel upgrading by the microbial-shift reaction.

Zinc Enhances Cadmium Accumulation in Shoots of Hyperaccumulator Solanum nigrum by Improving ATP-Dependent Transport and Alleviating Toxicity.

Solanum nigrum is a cadmium (Cd) and zinc (Zn) accumulator with potential for phytoextraction of soil contaminated with heavy metals. However, how Zn affects Cd accumulation in S. nigrum remains unclear. In this study, S. nigrum seedlings were treated with 100 μmol·L-1 Zn (Zn100), 100 μmol·L-1 Cd (Cd100), and the Zn and Cd combination (Zn100+Cd100) for 10 days under hydroponic culture. Compared with Cd100, the Cd content in stems, leaves, and xylem saps was 1.8, 1.6, and 1.3 times more than that in Zn100+Cd100, respectively. In addition, the production of reactive oxygen species in leaves was significantly upregulated in Cd100 compared with the control, and it was downregulated in Zn100. Comparative analyses of transcriptomes and proteomes were conducted with S. nigrum leaves. Differentially expressed genes (DEGs) were involved in Cd uptake, transport, and sequestration, and the upregulation of some transporter genes of Zn transporters (ZIPs), a natural resistance associated macrophage protein (Nramp1), a metal-nicotianamine transporter (YSL2), ATP-binding cassette transporters (ABCs), oligopeptide transporters (OPTs), and metallothionein (MTs) and glutathione S-transferase (GSTs) genes was higher in Zn100+Cd100 than in Cd100. In addition, differentially expressed proteins (DEPs) involved in electron transport chain, ATP, and chlorophyll biosynthesis, such as malate dehydrogenases (MDHs), ATPases, and chlorophyll a/b binding proteins, were mostly upregulated in Zn100. The results indicate that Zn supplement increases Cd accumulation and tolerance in S. nigrum by upregulating ATP-dependent Cd transport and sequestration pathways.

Woodland expansion and upland management strategy dilemmas for biodiversity and carbon storage in the Cairngorms national park

Nature-based solutions are increasingly advocated to mitigate climate change and biodiversity loss, while improving ecosystem resilience and providing additional ecosystem services. In Scotland, woodland expansion and restoration of degraded peatlands are expected to play a major role in meeting net-zero emissions by 2045 and have prompted debates about the impact of increased woodland cover and prescribed fire on the biodiversity and ecosystem services provided by upland landscapes. In alignment with national policy, the Cairngorms National Park, the UK’s largest national park, has committed to an ambitious programme of woodland expansion and peatland restoration in a landscape dominated by heather moorlands that is predominantly managed through prescribed burning for game management. Using the Native Woodland Model and the InVest modelling platform, we assessed the effects of five land cover and land use change scenarios, with different levels of prescribed fire regulation and woodland expansion, to evaluate their benefits and costs on biodiversity and carbon sequestration. Results show that changing the extent and management of habitats will result in different carbon sequestration pathways, as well as biodiversity winners and losers. The scenario presenting greater benefits for the conservation of biodiversity also has lower above-ground carbon sequestration potential and a larger negative impact on red grouse habitats, thus being less profitable to sporting estates. Hence, trade-offs will be necessary to achieve optimal carbon sequestration and biodiversity gains, with a potential role played by the continuation of prescribed fires and traditional moorland management practices as well as complementary grants and support measures based on biodiversity benefits rather than carbon sequestration. The results from this study could support discussions regarding future management of the uplands, trade-offs between loss of carbon in soils, carbon sequestration in woodlands and conservation of biodiversity, as well as stakeholders likely to be affected.

Carbon sequestration in coastal sediments via in situ capping with steel slag

A 4000 m2 steel slag (SS) bed was constructed in the brackish water area for water quality remediation in 2017. This study demonstrates the ability of SS to stimulate carbon sequestration based on one-year pilot and in situ SS beds. The pilot SS bed increased the soil organic matter (SOM) content by 5.1 wt %, sequestering sewage-derived organic carbon (Corg) as SOM. Notably, recalcitrant SOM increased by over 40 %, indicating long-term retention of Corg in the sediment. SS increased the Corg density in the sediment by approximately two times, exceeding that of the dense carbon ecosystems found in global seagrass meadows and peatlands. The complexation of the low-molecular-weight Corg with iron in SS was the main pathway for Corg fixation. Benthic animal investigations showed that SS capping fostered an anaerobic fauna ecosystem, aiding biotic Corg sequestration. Algae proliferation on the SS bed suggested complex benthic ecosystems with photosynthetic carbon fixation. Overall, SS beds offer a new abiotic carbon sequestration pathway with environmental restoration benefits; in situ capping with metal-containing material is potentially more economical and sustainable compared to traditional landfilling.

Artificial cellulosic leaf with adjustable enzymatic CO2 sequestration capability

Developing artificial leaves to address the environmental burden of CO2 is pivotal for advancing our Net Zero Future. In this study, we introduce EcoLeaf, an artificial leaf that closely mimics the characteristics of natural leaves. It harnesses visible light as its sole energy source and orchestrates the controlled expansion and contraction of stomata and the exchange of petiole materials to govern the rate of CO2 sequestration from the atmosphere. Furthermore, EcoLeaf has a cellulose composition and mechanical strength similar to those of natural leaves, allowing it to seamlessly integrate into the ecosystem during use and participate in natural degradation and nutrient cycling processes at the end of its life. We propose that the carbon sequestration pathway within EcoLeaf is adaptable and can serve as a versatile biomimetic platform for diverse biogenic carbon sequestration pathways in the future.

Unlocking the formate utilization of wild-type Yarrowia lipolytica through adaptive laboratory evolution.

Synthetic biology is contributing to the advancement of the global net-negative carbon economy, with emphasis on formate as a member of the one-carbon substrate garnering substantial attention. In this study, we employed base editing tools to facilitate adaptive evolution, achieving a formate tolerance of Yarrowia lipolytica to 1M within 2 months. This effort resulted in two mutant strains, designated as M25-70 and M25-14, both exhibiting significantly enhanced formate utilization capabilities. Transcriptomic analysis revealed the upregulation of nine endogenous genes encoding formate dehydrogenases when cultivated utilizing formate as the sole carbon source. Furthermore, we uncovered the pivotal role of the glyoxylate and threonine-based serine pathway in enhancing glycine supply to promote formate assimilation. The full potential of Y. lipolytica to tolerate and utilize formate establishing the foundation for pyruvate carboxylase-based carbon sequestration pathways. Importantly, this study highlights the existence of a natural formate metabolic pathway in Y. lipolytica.

Density‐dependent influence of ribbed mussels on salt marsh nitrogen pools and processes

Abstract Bivalves are becoming an increasingly popular tool to counteract eutrophication, particularly in vegetated coastal ecosystems where synergistic interactions between bivalves and plants can govern important N sequestration pathways. In turn, new calls to evaluate how bivalve densities modify N pools and processes across multiple scales have surfaced. Ribbed mussels, Geukensia demissa, and their relationship with smooth cordgrass present a classic demonstration of positive bivalve‐plant interactions and offer a useful model for assessing density dependence. We measure porewater ammonium concentrations, N stable isotope signatures in cordgrass tissue, and sediment N fluxes in mussel aggregations and in cordgrass‐only plots across a southeastern U.S. salt marsh. In addition to measuring the effect of mussel presence, we evaluate mussel density dependence through a multiscale approach. At the patch scale, we quantify mussel density effects within their aggregations (individuals m−2) while at a larger landscape scale, we quantify mussel density effects on the cordgrass‐only areas they neighbour (individuals ~30 m−2). Porewater ammonium concentrations were halved in mussel biodeposits relative to sediments in cordgrass‐only areas and negatively related to mussel density within aggregations. Leaf clip ẟ15N signatures were nearly 2‰ higher in cordgrass growing among mussel aggregations and increased with increasing patch mussel density. Microcosm incubations showed that mussels enhanced N2 flux (i.e., nitrogen removal) and DIN flux (i.e., N regeneration) into the water column, where only nitrogen removal increased with increasing patch‐scale mussel density. Across the marsh landscape, mussel coverage drove ammonium accumulation and N2 flux in sediments. Synthesis. Our results suggest that, at the patch scale, mussels stimulate the microbial metabolism of N, the assimilation of this bioavailable N by cordgrass, and nitrogen removal in a positive, density‐dependent manner. Tidal currents redistribute mussel biodeposits from mussel aggregations to surrounding areas, influencing biogeochemical transformations at scales beyond their physical footprint. We emphasize that the N regeneration potential of bivalve populations is a significant metric contributing to their mitigation potential and that bivalve density effects may be non‐linear, vary across patch to ecosystem scales, and have differing implications for the plants with which they interact.

From biowaste to BioPave: Biological pathways for sequestration of anthropogenic CO2 and enhancing durability of roadway infrastructures

Biomass-derived bio-oils are emerging as sustainable, low-carbon alternatives for construction materials, particularly in innovative pavement applications, 'BioPave'. This study evaluates bio-oils from various sources, including algae and wastewater biomass, revealing variations in carbon, nitrogen, and sulfur contents, along with viscosity. We focused on their application in outdoor construction, assessing their resistance to thermal and solar radiation, and moisture. The study also examines their interaction with siliceous surfaces and their influence on asphalt adhesion in BioPave systems under moisture conditions. Laboratory experiments and computational modeling demonstrated molecular composition significantly influenced bio-oils' responses to thermal and UV exposure. Bio-oils rich in polar groups showed hardening upon thermal treatment, while those with higher concentrations of saturated aliphatics remained more stable. Furthermore, our findings highlight the significance of dosage control in maximizing beneficial effects of bio-oils in intermolecular interactions at bitumen-aggregate interface in BioPave applications. These findings offer insights into the potential of bio-oils in sustainable construction and the need for dosage control to optimize pavement performance.

Multiperiod Modeling and Optimization of Hydrogen-Based Dense Energy Carrier Supply Chains

The production of hydrogen-based dense energy carriers (DECs) has been proposed as a combined solution for the storage and dispatch of power generated through intermittent renewables. Frameworks that model and optimize the production, storage, and dispatch of generated energy are important for data-driven decision making in the energy systems space. The proposed multiperiod framework considers the evolution of technology costs under different levels of promotion through research and targeted policies, using the year 2021 as a baseline. Furthermore, carbon credits are included as proposed by the 45Q tax amendment for the capture, sequestration, and utilization of carbon. The implementation of the mixed-integer linear programming (MILP) framework is illustrated through computational case studies to meet set hydrogen demands. The trade-offs between different technology pathways and contributions to system expenditure are elucidated, and promising configurations and technology niches are identified. It is found that while carbon credits can subsidize carbon capture, utilization, and sequestration (CCUS) pathways, substantial reductions in the cost of novel processes are needed to compete with extant technology pathways. Further, a research and policy push can reduce the levelized cost of hydrogen (LCOH) by upwards of 2 USD/kg.

Irreversible Trace Metal Binding to Goethite Controlled by the Ion Size.

The dynamics of trace metals at mineral surfaces influence their fate and bioaccessibility in the environment. Trace metals on iron (oxyhydr)oxide surfaces display adsorption-desorption hysteresis, suggesting entrapment after aging. However, desorption experiments may perturb the coordination environment of adsorbed metals, the distribution of labile Fe(III), and mineral aggregation properties, influencing the interpretation of labile metal fractions. In this study, we investigated irreversible binding of nickel, zinc, and cadmium to goethite after aging times of 2-120 days using isotope exchange. Dissolved and adsorbed metal pools exchange rapidly, with half times <90 min, but all metals display a solid-associated fraction inaccessible to isotope exchange. The size of this nonlabile pool is the largest for nickel, with the smallest ionic radius, and the smallest for cadmium, with the largest ionic radius. Spectroscopy and extractions suggest that the irreversibly bound metals are incorporated in the goethite structure. Rapid exchange of labile solid-associated metals with solution demonstrates that adsorbed metals can sustain the dissolved pool in response to biological uptake or fluid flow. Trace metal fractions that irreversibly bind following adsorption provide a contaminant sequestration pathway, limit the availability of micronutrients, and record metal isotope signatures of environmental processes.

Four years of climate warming reduced dark carbon fixation in coastal wetlands.

Dark carbon fixation (DCF), conducted mainly by chemoautotrophs, contributes greatly to primary production and the global carbon budget. Understanding the response of DCF process to climate warming in coastal wetlands is of great significance for model optimization and climate change prediction. Here, based on a 4-yr field warming experiment (average annual temperature increase of 1.5°C), DCF rates were observed to be significantly inhibited by warming in coastal wetlands (average annual DCF decline of 21.6%, and estimated annual loss of 0.08-1.5 Tg C yr-1 in global coastal marshes), thus causing a positive climate feedback. Under climate warming, chemoautotrophic microbial abundance and biodiversity, which were jointly affected by environmental changes such as soil organic carbon and water content, were recognized as significant drivers directly affecting DCF rates. Metagenomic analysis further revealed that climate warming may alter the pattern of DCF carbon sequestration pathways in coastal wetlands, increasing the relative importance of the 3-hydroxypropionate/4-hydroxybutyrate cycle, whereas the relative importance of the dominant chemoautotrophic carbon fixation pathways (Calvin-Benson-Bassham cycle and W-L pathway) may decrease due to warming stress. Collectively, our work uncovers the feedback mechanism of microbially mediated DCF to climate warming in coastal wetlands, and emphasizes a decrease in carbon sequestration through DCF activities in this globally important ecosystem under a warming climate.

Mercury sequestration pathways under varying depositional conditions during Early Jurassic (Pliensbachian and Toarcian) Karoo-Ferrar volcanism

Major extinction events appear coincident with the emplacement of large igneous provinces (LIPs) throughout Earth's past, but the cause-and-effect relationship is often poorly understood due to challenges in the stratigraphical correlation between LIP occurrence and sedimentary archives. Large igneous provinces are thought to have released large amounts of greenhouse gasses and toxic compounds (including mercury) into the global ocean-atmosphere system, leading to major climatic and environmental perturbations and ecosystem deterioration. In recent years, the analyses of bulk sedimentary mercury (Hg) concentrations have increasingly been used to assess the temporal occurrence and geographic reach of LIPs, as observed through elevated Hg concentrations in sedimentary archives which otherwise show no direct evidence of volcanism at those times.Mercury can be sequestered into sediments in different ways, but dominant Hg sequestration pathways can vary through space and time depending on the depositional environment and changes therein, which may disguise changes in global Hg fluxes into Earth's surficial environments, significantly complicating the interpretation of sedimentary Hg-records. Here, we statistically analyse sedimentary geochemical records from three distinctly different depositional environments that occurred during the Toarcian Oceanic Anoxic Event (T-OAE, at ∼183 Ma, and coincident with Karoo-Ferrar LIP volcanism), and assess the temporal and spatial variability in dominant Hg sequestration pathways during LIP volcanism.The geochemical data show significantly different affinities of mercury with assessed sedimentary geochemical parameters in each of the studied successions. Principal component analyses (PCA) of sedimentary geochemical data (including Hg), from the restricted, anoxic-euxinic Cleveland Basin (Yorkshire, UK) show that Hg covaries mostly with organic-sulphide-associated elements and to a lesser extent with the redox-sensitive elements, as opposed to the semi-restricted, sub-oxic Cardigan Bay Basin (Wales, UK) and the well-connected, oxygenated Subbetic Basin (South Iberian Palaeomargin, SE Spain), where Hg covaries dominantly with the redox-sensitive elements and secondarily with detrital elements. These findings show that mineral phases and materials other than organic matter need to be considered as dominant Hg carriers in non-anoxic depositional settings. Furthermore, observed differences between the studied sites regarding the dominant Hg-sequestration processes, suggest temporal and spatial variance in Hg drawdown fluxes, and possibly local marine residence times.

Biofilm and metallothioneins: A dual approach to bioremediate the heavy metal menace

AbstractMetallothioneins are a class of proteins produced by both prokaryotes and eukaryotes, having low molecular weight and abundant cysteine residues. These proteins play a humongous role in binding, sequestration, and even buffering of the intracellular metal ions. Though they are a wide class of proteins, much of them are yet to be explored. Their metal binding attribute is unique and they form distinctive metal‐thiolate clusters. They have also been known to have ROS scavenging activities due to the presence of the cysteine residues. Phytochelatins also play major roles in metal sequestration pathways. Biofilms on the other hand are clusters of bacterial cells surrounded by an extracellular matrix of polymeric substances secreted by the bacteria themselves. Biofilms play multiple roles, from nutrient sequestration, stress resistance to surface adherence. But lesser explored arenas include assistance in heavy metal trapping and bio‐remediation. Researchers have conducted studies that have demonstrated increased metal trapping, resistance and uptake in biofilm forming strains than non‐biofilm forming mutants. Therefore, this study would explore the dual role of metallothionein and biofilm in their activity of metal sequestration and heavy metal remediation and provide certain insights so as to keenly understand the correlations between the two.

Seaweed as climate mitigation solution: Categorizing and reflecting on four climate mitigation pathways

AbstractGlobal concerns about climate change were once again expressed at the COP27 in Sharm El‐Sheikh. Seaweed is frequently presented as a solution for climate mitigation. For a proper appraisal of its contribution to mitigating climate change, it is necessary to distinguish between, and critically scrutinize, the various pathways seaweed‐based climate mitigations can take. This article identifies four different climate mitigation pathways and critically reflects on each. First, carbon sequestration, occurring when grown seaweed is left in the seas or, second, purposefully sunk. Third, carbon emission reduction, resulting when seaweed‐based products replace products with a higher carbon footprint, either fossil based products or other organic material. Fourth, carbon emission avoidance, taking place when seaweed products are used to avoid greenhouse gas emissions in other production processes. Each of these pathways requires specific methods to quantify their magnitude and comes with critical questions to ask. The sequestration pathway requires monitoring of net carbon production and the amount of carbon that is eventually exported to the deep sea. Pathways 3 and 4 require Life Cycle Assessment and/or Carbon Footprint with system boundaries set to include the production system itself and installation thereof. We propose an unequivocal categorization in a belief that confusion on the benefits of seaweed will eventually impede development of seaweed‐based solutions.This article is categorized under: The Carbon Economy and Climate Mitigation &gt; Benefits of Mitigation

Diversity of CO2 Concentrating Mechanisms in Macroalgae Photosynthesis: A Case Study of Ulva sp.

Many algae respond to the CO2 limitation in seawater by inducing a CO2 concentrating mechanism (CCM) to obtain sufficient inorganic carbon to meet their photosynthetic needs, and Ulva sp. is a model population suitable for studying the ecological adaptability of macroalgae. As the dominant species of green tide disaster, Ulva sp. often faces strong inorganic carbon restriction due to its rapid growth and high population density and must have evolved a variety of carbon acquisition strategies, such as CCM, to overcome these limitations. This paper briefly summarizes the position and function of the important components of CCM (inorganic carbon transporters, carbonic anhydrase, Rubisco, and pyrenoid) and introduces several indexes suitable for evaluating the relative function of CCMs in macroalgae from the aspects of affinity between photosynthesis and Rubisco for CO2, and carbonic anhydrase inhibitor. The methods of judging the carbon sequestration pathway of Ulva sp., the CCM responses of diversity under different carbon sources, and the related genes that may be involved in the operation of CCMs were summarized. This work could provide a reference for revealing the CCMs of macroalgae and lay a foundation for further research on the inorganic carbon utilization strategy of the Ulva sp.

Nutrient-dependent interactions between a marine copiotroph Alteromonas and a diatom Thalassiosira pseudonana.

As the major producers and consumers, phytoplankton and bacteria play central roles in marine ecosystems and their interactions show great ecological significance. Whether mutualistic or antagonistic, the interaction between certain phytoplankton and bacterial species is usually seen as a derivative of intrinsic physiological properties and rarely changes. This study demonstrated that the interactions between the ubiquitously co-occurring bacteria and diatom, Alteromonas and Thalassiosira pseudonana, varied with nutrient conditions. They overcame hardship together in oligotrophic seawater but showed antagonistic effects against each other under nutrient amendment. The contact-dependent algicidal behavior of Alteromonas based on protease activity solved the paradox among bacterial proliferation, nutrient viability, and algal demise haunting other known non-contact-dependent algicidal processes and might actually trigger the collapse of algal blooms in situ. The chemotactic and swarming movement of Alteromonas might also contribute greatly to the breakdown of "marine snow," which could redirect the carbon sequestration pathway in the ocean.

Natural and anthropogenic carbon input affect microbial activity in salt marsh sediment.

Salt marshes are dynamic, highly productive ecosystems positioned at the interface between terrestrial and marine systems. They are exposed to large quantities of both natural and anthropogenic carbon input, and their diverse sediment-hosted microbial communities play key roles in carbon cycling and remineralization. To better understand the effects of natural and anthropogenic carbon on sediment microbial ecology, several sediment cores were collected from Little Sippewissett Salt Marsh (LSSM) on Cape Cod, MA, USA and incubated with either Spartina alterniflora cordgrass or diesel fuel. Resulting shifts in microbial diversity and activity were assessed via bioorthogonal non-canonical amino acid tagging (BONCAT) combined with fluorescence-activated cell sorting (FACS) and 16S rRNA gene amplicon sequencing. Both Spartina and diesel amendments resulted in initial decreases of microbial diversity as well as clear, community-wide shifts in metabolic activity. Multi-stage degradative frameworks shaped by fermentation were inferred based on anabolically active lineages. In particular, the metabolically versatile Marinifilaceae were prominent under both treatments, as were the sulfate-reducing Desulfovibrionaceae, which may be attributable to their ability to utilize diverse forms of carbon under nutrient limited conditions. By identifying lineages most directly involved in the early stages of carbon processing, we offer potential targets for indicator species to assess ecosystem health and highlight key players for selective promotion of bioremediation or carbon sequestration pathways.

Microbial Conversion and Utilization of CO2

Rising greenhouse gas emissions have contributed to unprecedented levels of climate change, while microbial conversion and utilization of CO2 is a practical way to reduce emissions and promote green manufacturing. This article mainly summarizes several natural CO2 pathways that have been discovered, including the Calvin cycle, the reduced tricarboxylic acid (rTCA) cycle, the Wood–Ljungdahl (WL) pathway, the 3-hydroxypropionate/4-hydroxybutyrate (HP/HB) cycle, the dicarboxylate/4-hydroxybutyrate (DC/HB) cycle, the 3-hydroxypropionate (3HP) cycle, the reductive glycine (rGly) pathway, and artificially designed carbon fixation pathways includes the CETCH cycle, the MOG pathway, the acetyl-CoA bicycle, and the POAP cycle. We also discussed applications of different carbon fixation enzymes, notably ribulose-1, 5-diphosphate carboxylase/oxygenase, pyruvate carboxylase, carbonic anhydrase, as well as formate dehydrogenase. This paper further addressed the development of photosynthetic autotrophs, chemergic autotrophs and model bacteria Escherichia coli or yeast produced main products for CO2 fixation through metabolic engineering, such as alcohols, organic acids, fatty acids and lipids, bioplastics, terpenoids, hydrocarbons, and biomass. Future studies on CO2 microbial conversion should focus on improving the efficiency of carbon fixation enzymes, metabolic modules of the carbon sequestration pathway, and intracellular energy utilization. Coupled microbial and electrochemical methods for CO2 fixation, in addition to biological fixation, show considerable promise.