INTRODUCTION AND OBJECTIVES: Positive surgical margins (PSM) are an important determinant of biochemical recurrence after radical prostatectomy (RP). Unlike most factors associated with disease-specific outcomes after RP (stage, Gleason score, PSA), surgical margin status can be influenced by the urologist. The majority of reports of PSM are from small institutional series and may not reflect realistic benchmarks for PSM. Further, differences in disease pathology affect the risk of PSM, including stage, Gleason score and PSA such that strata specific rates may be important. In this study, we utilize a national population-based cancer registry to evaluate the impact of primary disease characteristics that associate with PSMs and how this may affect surgical approaches. METHODS: Men undergoing RP were identified from the SEER cancer registry for the years 2004–2007 (for which PSA data were available). Pre-operative PSA, pathologic Gleason sum, stage, and surgical margin status were recorded. Differences between those with and without PSM were compared with chi-squared tests. The proportion of cases with PSM were determined and stratified by PSA and Gleason sum for both pT2 and pT3a tumors. Differences in PSM within strata were determined with chi-squared tests. RESULTS: 28,461 RP patients were identified and a PSM was present in 5,538 (19.5%). As expected, PSM were more common in pT3 (42%) than pT2 (16%) cases. Higher PSAs ( 4.0, 4–9.9, 10) were also associated with higher proportions of PSM (12%, 20% and 28%, respectively, p 0.001). Similarly, higher Gleason scores ( 6, 3 4, 4 3, 7) were associated with PSM (12%, 22%, 27% and 33%, respectively, p 0.001). The incidence of PSMs varied widely when stratified with primary disease characteristics. For pT2 tumors, the proportion of PSM ranged from 8% (Gleason 6, PSA 4.0) to 28% (Gleason 8–10, PSA 10). For pT3 tumors, the variation was even more substantial, ranging from 28% (Gleason 6, PSA 4.0) to 63% (Gleason 8–10, PSA 10). CONCLUSIONS: In this contemporary, population-based study of PSM after RP, we find that the proportion of PSMs vary significantly within both pT2 and pT3a cases when stratified by PSA and Gleason grades. These data can be used as a national reference for urologists in order to assess their own results.