Litter species richness influences fungal diversity because of resource heterogeneity. Litter species composition effects on decomposition have been studied mostly in aboveground litter. However, little is known about the effects of litter diversity of roots and litter type effect on fungal diversity in general. We addressed litter species composition and richness effects on diversity of ectomycorrhizal (EcM), saprotrophic and pathogenic fungi in decomposing foliar and root litter in the Satakunta forest diversity experiment by varying litter species richness from one to four species in 560 litter bags incubated under tree canopies. After one year of decomposition, there were no significant non-additive effects of litter mixtures on mass loss. Litter species composition was the strongest predictor for saprotroph and plant pathogen community structure in foliar litter, but its effect on root litter fungal composition was much weaker. Litter diversity strongly enhanced fungal richness in foliar but not in root substrate. We found no evidence for host litter preferences in host-specific EcM fungi. Our study suggests that litter species richness and especially certain litter species may influence decomposition through modifying fungal community composition both in foliar and root litter.