The freshwater pearl mussel, Margaritifera margaritifera, is an endangered species and its population has decreased rapidly over the last century. Scotland is the home to half of the known populations of M. margaritifera. Land use is a significant factor affecting water quality as well as the distribution of freshwater pearl mussels. Thirty eight sites in River South Esk were selected to investigate the impacts of land use on water conductivity, pH and the concentration of nitrate and phosphorus on the distribution of mussels. M. margaritifera was more abundant in habitats in woodland with low and stable water nutrient level. Water chemical analysis indicates that pollutant concentration is related to the vegetation of river catchments. River water passing woodland has a relatively better quality and overhanging boughs of trees create shadows which attract mussels. Livestock pasture catchments seem to have less significant chemical effects, but animal activities may disturb the habitat of mussels and increase water turbidity. Water pollution in irrigated crop land is relatively higher. Heather moorland is of less concern because of its inappropriate channel type for mussels. Waters in the vicinity of housing, roads and bridges seem to be avoided by mussels. Margaritifera margaritifera did not show any preference on the type of shadows. Living mussels have been discovered at the sites which have shadows created by overhanging branches or high riverbanks.
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