Objective To explore the distribution of parvovirus B19 (HPVB19) infection in patients with leukopenia. Methods Patients who visited the Affiliated Hospital of Hangzhou Normal University from January 2015 to June 2016 were analyzed. Patients with peripheral leucocytes count less than 3.5×109/L were included in experiment group and healthy people were included in control group. HPVB19 IgG and IgM were detected by enzyme-linked immunosorbent assay, and HPVB19 DNA was detected by quantitative polymerase chain reaction. Differences in continuous data between two groups were compared with two-sample t test and those in categorical data were compared with Chi-square test. Results A total of 79 patients were included in experiment group, including 32 males and 47 females. Ages ranged from 24 to 62 years old. And 126 healthy individuals were included in control group, including 55 males and 71 females. Ages ranged from 28 to 67 years old. The positive rates of HPVB19 IgG, IgM and DNA in experiment group were 34.2%, 5.1% and 3.8%, respectively, while those in control group were 36.5%, 0 and 0, respectively. The detection rates of HPVB19 IgM and DNA between two groups were significantly different (χ2=6.507, P=0.011 and χ2=4.856, P=0.028, respectively). Sequence analysis for 3 of the HPVB19 DNA positive samples showed that there were two single nucleotide polymorphisms in VP1/VP2 sequence from one patient, which contributed to the 153rd (L/H) and 219th (N/Y) amino acids mutations, respectively. Phylogenetic analysis found that two strains belong to genotype 1a and one strain belongs to genotype 1b. Conclusions Detection rate of parvovirus HPVB19 infection (positive rates of HPVB19 IgM and DNA) in leukopenic patients is significantly higher than healthy controls. HPVB19 should be detected before considering transfusion in leukopenic patients in clinical practice. Key words: Parvovirus B19, human; Leukopenia; Phylogenetic relationships; Genotype