Abstract. The changes in the concentrations of silicate, phosphate, and inorganic nitrogen in Eiefsis Bay. an intermittently anoxic basin, arc described and related to the changes in the physical properties of the water. Winter convection resulted in a very small vertical gradient of temperature, salinity, oxygen, and nutrients. Stratification started to develop in May and persisted for about 6 months. High values of silicate, phosphate, and ammonia occurred during the anoxic conditions prevailing in summer. The vertical transport of particulate organic matter and decomposition of abundant pelagic and benthic organic matter during the summer produced a low oxygen level in the bottom layer below the pycnoclinc. A high sea water temperature and vertical stability contributed to the development of anoxic conditions during the summer in the near bottom layer and to mass mortality of benthic macrofauna. Also the Eiefsis Bay anoxia appears to have had significant ecological effects on many other marine species, including several of economic importance.