Partial LSU rDNA Sequences Research Articles

Architecture of the flagellar apparatus and related structures in Kolkwitziella acuta: Towards a fine-structural characterization of pallium-feeding dinoflagellates (Protoperidiniaceae)

The fine-structural organization of the protoperidiniacean Kolkwitziella acuta was examined by SEM and TEM. Serial sections of five cells of K. acuta were used to study the architecture of basal bodies and associated roots, the pusular system, and the feeding apparatus. The basal bodies were inserted 1 µm apart at an angle of ca. 80°, and displayed the typical peridinioid features of associating with two roots each and having a layered connective linking the longitudinal microtubular root to the transverse striated root. The transverse flagellar canal was associated with a ‘sac pusule’, while the longitudinal flagellar canal was linked, via a pusule canal surrounded by a conspicuous layer of striated material, to a collecting chamber from which ca. 40 pusular tubes radiated. An extruded pallium was present, associated with a microtubular strand (the MSP) that extended anteriorly and progressively separated into six or seven groups of microtubules, with electron-opaque vesicles present along the MSP. A prominent striated collar surrounded the exit area of the pallium and was connected to the striated collars of both the transverse and longitudinal flagellar canals. The partial nuclear-encoded LSU rDNA sequence confirmed the identification as K. acuta. The currently known fine-structural features of pallium-feeding Protoperidiniaceae are summarized.

Phylogenetic analysis of the Cladophora coelothrix complex, including the description of the new genus Leliaertia (Cladophorales, Ulvophyceae)

ABSTRACT Molecular phylogenetic studies have revealed the polyphyletic nature of Cladophora as traditionally circumscribed, which is separated into four main clades: Cladophoraceae, Siphonocladus, Pithophoraceae and Pseudocladophoraceae. Several taxonomic proposals have recently been made to resolve its polyphyletic nature. The present work focuses on the cryptic diversity of Cladophora coelothrix, within the Siphonocladus clade. Based on new collections from northeastern Brazil and phylogenetic analyses of partial SSU and LSU rDNA sequence alignments, we propose the new genus and species Leliaertia repens to accommodate one of the cryptic species hitherto included in C. coelothrix, occurring in the tropical Atlantic, Indian and Pacific Oceans. Leliaertia repens was recovered in the Siphonocladus clade and is phylogenetic distinct from the genuine Cladophora species in the Cladophoraceae. The new species occurs in marine and estuarine environments and forms conspicuous mats of semi-prostrate filaments. It represents a cryptic species and genus since morphological features, including the diameter and length:diameter ratio of the apical cell, show high levels of overlap with other species, including C. socialis. Our phylogenetic data indicate that L. repens, C. coelothrix and C. socialis represent a complex of cryptic species with at least four lineages, some of which co-occur in tropical seas.

Fungal diversity in the tropics: Entoloma spp. in Panama

Entoloma (Agaricales, Basidiomycota) is a species-rich genus with approximately 2000 species known worldwide. In Central America, however, information about the species of this genus is sparse, despite the generally high biodiversity in this region. Recently, 124 specimens of Entoloma were collected in Panama, Chiriquí Province. In the present publication, the morphology of 20 species represented by more than one specimen is described and depicted with photographs, line drawings, and scanning electron micrographs. Molecular phylograms based on ITS or concatenated ITS and partial nc LSU rDNA sequences are provided. The taxonomic status of these species is evaluated and 17 species of Entoloma are described as new to science. Only one species could be assigned to an already known species, viz. Entoloma belouvense. Nolanea albertinae, described from Brazil, appeared similar and is combined in E. belouvense on varietal level. The identifications of two further species are uncertain. At least 30 other species, including potentially new species, cannot formally be described due to insufficient material. A preliminary key to the species of the genus Entoloma in Panama is provided. The spatial shape of the polyhedroid basidiospores of Entoloma spp. is discussed based on literature and the micrographs generated for the present study. Our re-evaluations indicate that the type of polyhedroid basidiospore and the structure of its base are not reliable as diagnostic characters for the delimitation of subgenera in Entoloma.

Pseudocochlodinium profundisulcus Resting Cysts Detected in the Ballast Tank Sediment of Ships Arriving in the Ports of China and North America and the Implications in the Species' Geographic Distribution and Possible Invasion.

Over the past several decades, much attention has been focused on the dispersal of aquatic nonindigenous species via ballast tanks of shipping vessels worldwide. The recently reclassified dinoflagellate Pseudocochlodinium profundisulcus (previously identified as Cochlodinium sp., Cochlodinium geminatum, or Polykrikos geminatus) was not reported in China until 2006. However, algal blooming events caused by this organism have been reported almost every year since then in the Pearl River Estuary and its adjacent areas in China. Whether P. profundisulcus is an indigenous or an invasive species has thus become an ecological question of great scientific and practical significance. In this study, we collected the sediments from ballast tanks of ships arriving in the ports of China and North America and characterized dinoflagellate resting cysts via a combined approach. We germinated two dark brownish cysts from the tank of an international ship (Vessel A) arriving at the Jiangyin Port (China) into vegetative cells and identified them as P. profundisulcus by light and scanning electron microscopy and phylogenetic analyses for partial LSU rDNA sequences. We also identified P. profundisulcus cyst from the ballast tank sediment of a ship (Vessel B) arriving in the port of North America via single-cyst PCR and cloning sequencing, which indicated that this species could be transported as resting cyst via ship. Since phylogenetic analyses based on partial LSU rDNA sequences could not differentiate all sequences among our cysts from those deposited in the NCBI database into sub-groups, all populations from China, Australia, Japan, and the original sources from which the cysts in the two vessels arrived in China and North America were carried over appeared to share a very recent common ancestor, and the species may have experienced a worldwide expansion recently. These results indicate that P. profundisulcus cysts may have been extensively transferred to many regions of the world via ships’ ballast tank sediments. While our work provides an exemplary case for both the feasibility and complexity (in tracking the source) of the bio-invasion risk via the transport of live resting cysts by ship’s ballast tanks, it also points out an orientation for future investigation.

Nitzschia gobbii sp. nov. (Bacillariophyceae): a common but overlooked planktonic diatom species from the northwestern Adriatic Sea

ABSTRACT Planktonic diatoms of the family Bacillariaceae, including Nitzschia spp, Pseudo-nitzschia spp and Cylindrotheca closterium, are common and often highly abundant in the Adriatic Sea. During the 30 years of phytoplankton monitoring at the coastal site of the LTER Senigallia-Susak transect, a nitzschioid diatom with morphology matching that of Nitzschia section Nitzschiella (dilated central portion and two long rostra) was frequently observed. In this study, we describe this new species as Nitzschia gobbii sp. nov., combining morphological (transmission electron microscopy and scanning electron microscopy) and molecular (LSU and ITS rDNA) data. The morphology of Nitzschia gobbii makes it easy to confuse with other common species in the Adriatic Sea (Cylindrotheca closterium and Pseudo-nitzschia galaxiae). The partial LSU rDNA sequences of strains of Nitzschia gobbii sp. nov. were resolved in a well-supported clade. In this area, this species has been mainly recorded in spring-summer with a maximum abundance of 3.2 × 106 cells l–1. None of the tested Nitzschia gobbii strains produced domoic acid in detectable amounts.

Phylogeny of dracunculoid nematodes (Chromadorea: Rhabditida: Spirurina: Dracunculoidea) from some Eurasian freshwater fishes.

Sets of small ribosomal DNA (SSU rDNA) and large ribosomal DNA (LSU rDNA) sequences were obtained for Philometroides moraveci Vismanis Yunchis, 1994, Philometra kotlani (Molnár, 1969), Philometra rischta Skrjabin, 1923, Philometra cf. obturans (Prenant, 1886) (Philometridae), Sinoichthyonema amuri (Garkavi, 1972), Agrachanus scardinii (Molnár, 1966), Kalmanmolnaria intestinalis (Dogiel Bychowsky, 1934) and Skrjabillanus tincae Shigin Shigina, 1958 (Skrjabillanidae). Phylogenetic analysis of SSU rDNA data shows that dracunculoid nematodes are divided into two well-supported clades designated as Clade I and Clade II, respectively. Clade I includes the type species of the genus Philonema Kuitunen-Ekbaum, 1933, some species from the family Daniconematidae Moravec Køie, 1987 and two subfamilies of skrjabillanids, Skrjabillaninae Shigin Shigina, 1958 and Esocineminae Moravec, 2006. Clade II unites species from the families Dracunculidae Stiles, 1907, Micropleuridae Baylis Daubney, 1926 and Philometridae Baylis Daubney, 1926. Within the Philometridae, there are several well-supported groups of species, one of which unites freshwater Philometra spp. from the Palearctic cyprinids, identified as P. kotlani, P rischta, P. ovata (Zeder, 1803) and P. cyprinirutili (Creplin, 1825). However, the phylogenetic relationships of most philometrids are unresolved. An analysis of partial SSU and LSU rDNA sequences indicates that there is no direct phylogenetic relationship between Agrachanus Tikhomirova, 1971 (type species Skrjabillanus scardinii Molnár, 1966) and Skrjabillanus Shigin Shigina, 1958 (type species Sk. tincae), which means that the genus Agrachanus can be resurrected. Our study confirms that Philonematinae Ivashkin, Sobolev Khromova, 1971 should be elevated to the family rank. We formally establish the family Philonematidae Ivashkin, Sobolev Khromova, 1971 stat. nov. We also suggest combining the superfamilies Dracunculoidea Stiles, 1907 and Camallanoidea Railliet Henry, 1915 into the infraorder Camallanomorpha Roberts, Janovy Nadler, 2013.

Studies on Woloszynskioid Dinoflagellates X: Ultrastructure, Phylogeny and Colour Variation in Tovellia rubescens n. sp. (Dinophyceae).

The external morphology and internal cell fine structure of a new species of Tovelliaceae, Tovellia rubescens n. sp., is described. Phylogenetic analyses based on partial LSU rDNA sequences place the new species in a clade containing Tovellia species that accumulate red pigments and identify T.aveirensis as its closest known relative. Cells of T.rubescens n. sp. were mostly round and had the cingulum located near the middle, with its ends displaced about one cingular width. Small numbers of distinctly flat cells appeared in culture batches; their significance could not be determined. Cells of the new species in culture batches progressively changed from a yellowish-green, mainly due to chloroplast colour, to a reddish-brown colour that appeared associated with lipid bodies. The switch to a reddish colour happened earlier in batches grown in medium lacking sources of N or P. Pigment analyses by HPLC-MS/MS revealed the presence of astaxanthin and astaxanthin-related metabolites in the new species, but also in T.aveirensis, in which a reddish colour was never observed. The chloroplast arrangement of T.rubescens n. sp. resembled that of T.aveirensis, with lobes radiating from a central pyrenoid complex. The flagellar apparatus and pusular system fell within the general features described from other Tovelliaceae. A row of microtubules interpretable as a microtubular strand of the peduncle was present. Spiny resting cysts with red contents and an ITS sequence identical to that of cultured material of the new species were found in the original locality.

Characterization of the unarmored dinoflagellate Pseliodinium pirum (Ceratoperidiniaceae) from Jiaozhou Bay, China

SUMMARYA strain of Pseliodinium pirum was isolated from Jiaozhou Bay, China, identified based on a recently emended classification, and further characterized for its morphology using light, scanning electron, and transmission electron microscopy, and phylogeny based on SSU and partial LSU rDNA sequences. The pigment composition, life history, and potential effects on aquatic animals were also examined. We observed the typical characteristics of Ceratoperidiniaceae, in which its apical structure complex (ASC) formed a circular loop, and the ASC of our isolate comprised four to five rows of vesicles, and connected with sulcal intrusion. Epifluorescence and transmission electron microscopy revealed a bean‐shaped, centrally located nucleus, with at least 76 chromosomes. Numerous rod‐shaped chloroplasts were in connection to the irregularly shaped pyrenoids. Pigment analysis showed that peridinin was the most abundant among all carotenoids and other pigments. Phylogenetic analyses using maximum likelihood and Bayesian inference indicated that our isolate is conspecific with the entity Cochlodinium cf. helix (accession No. KF245459), but different from Ceratoperidinium, Kirithra, and other unidentified species of the family Ceratoperidiniaceae. Pseliodinium pirum could produce sexual, thin‐walled cyst, with subspherical and spherical shape and smooth surface (without spines or rough projections). The cyst could germinate within 3 days. Bioassays did not show adverse effects of P. pirum on the finfish Oryzias melastigma and the rotifer Brachionus plicatilis, indicating it may not be a harmful species.

Fenestelloid clades of the Cucurbitariaceae.

Fresh collections and their ascospore and conidial isolates backed up by type studies and molecular phylogenetic analyses of a multigene matrix of partial nuSSU-, complete ITS, partial LSU rDNA, rpb2, tef1 and tub2 sequences were used to evaluate the boundaries and species composition of Fenestella and related genera of the Cucurbitariaceae. Eight species, of which five are new, are recognised in Fenestella s.str., 13 in Parafenestella with eight new species and two in the new genus Synfenestella with one new species. Cucurbitaria crataegi is combined in Fenestella, C. sorbi in Synfenestella, Fenestella faberi and Thyridium salicis in Parafenestella. Cucurbitaria subcaespitosa is distinct from C. sorbi and combined in Neocucurbitaria. Fenestella minor is a synonym of Valsa tetratrupha, which is combined in Parafenestella. Cucurbitaria marchica is synonymous with Parafenestella salicis, Fenestella bavarica with S. sorbi, F. macrospora with F. media, and P. mackenziei is synonymous with P. faberi, and the latter is lectotypified. Cucurbitaria sorbi, C. subcaespitosa and Fenestella macrospora are lecto- and epitypified, Cucurbitaria crataegi, Fenestella media, F. minor and Valsa tetratrupha are epitypified in order to stabilise the names in their phylogenetic positions. A neotype is proposed for Thyridium salicis. A determinative key to species is given. Asexual morphs of fenestelloid fungi are phoma-like and do not differ from those of other representatives of the Cucurbitariaceae. The phylogenetic structure of the fenestelloid clades is complex and can only be resolved at the species level by protein-coding genes, such as rpb2, tef1 and tub2. All fungal species studied here occur, as far as has been possible to determine, on members of Diaporthales, most frequently on asexual and sexual morphs of Cytospora.

Molecular and morphological characterisation of Cryptaphelenchus baujardi n. sp. (Nematoda: Ektaphelenchinae), a new species based on two populations from Iran

SummaryCryptaphelenchus baujardin. sp. is described and illustrated based on two populations from Golestan province, northern Iran. The new species is characterised by female and male body length of 224 (190-261) and 215 (195-229)μm, respectively, offset cephalic region with a shallow constriction, delicate stylet 6.6 (6.0-7.0)μm long, four incisures in the lateral field, presence of a rudimentary post-uterine sac in the female gonoduct, elongate-conoid female tail ending in an acute to finely rounded terminus, male tail conical, male with seven caudal papillae and delicate spicules. The new species shows a strong resemblance toC. varicaudatusandC. iranicus, but has a sclerotised mass near the tip of the spicule and an indistinct spermatheca. Phylogenetic analyses based on both partial SSU and LSU rDNA sequences confirm its status as a new taxon.

Light capture and pigment diversity in marine and freshwater cryptophytes.

Phenotypic traits associated with light capture andphylogenetic relationships were characterized in 34 strains of diversely pigmented marine and freshwater cryptophytes. Nuclear SSU and partial LSU rDNA sequence data from 33 of these strains plus an additional 66 strains produced aconcatenated rooted maximum likelihood tree that classified the strains into 7 distinct clades. Molecular and phenotypic datatogether support: (i) the reclassification of Cryptomonas irregularis NIES 698 tothe genus Rhodomonas, (ii) revision of phycobiliprotein (PBP) diversity within the genus Hemiselmis to include cryptophyte phycocyanin (Cr-PC) 569, (iii) the inclusion of previously unidentified strain CCMP 2293 into the genus Falcomonas, even though it contains cryptophyte phycoerythrin 545 (Cr-PE 545), and (iv) the inclusion of previously unidentified strain CCMP 3175, which contains Cr-PE 545, in aclade with PC-containing Chroomonas species. Adiscriminant analysis-based model of group membership correctly predicted 70.6% of the clades using three traits: PBP concentration · cell-1 , the wavelength of PBP maximal absorption, and habitat. Non-PBP pigments (alloxanthin, chl-a, chl-c2 , α-carotene) did not contribute significantly to group classification, indicating the potential plasticity of these pigments and the evolutionary conservation of the PBPs. Pigment data showed evidence of trade-offs in investments in PBPs vs. chlorophylls (a +c2 ).

The morphological and phylogenetic characterization for the dinoflagellate Margalefidinium fulvescens (=Cochlodinium fulvescens) isolated from the Jiaozhou Bay, China

The dinoflagellate genus Margalefidinium has been split from Cochlodinium as a new genus recently and Margalefidinium fulvescens is one of the five Margalefidinium species. Margalefidinium fulvescens is toxic and has been reported from the coastal waters of USA, Canada, Mexico, China, Japan, Indonesia, Korea, Pakistan and Spain. Here we provide the morphological and phylogenetic characterization for an isolate of it from the Jiaozhou Bay, Qingdao, China. Our results showed that the vegetative cells were subspherical to ellipsoidal, 34-60 m in length, and 19-41 m in width. Both single cell forms and colonies in chains of 2, 4, or 8 cells were observed in cultures, but chain forms with 2 or 4 cells were observed more often in the field samples. The cingulum was rather deep, encircling the cell approximately twice, but the sulcus was rather narrow, surrounding the cell about one turn. The nucleus was spherical and located at the central epicone. The chloroplasts were granular, brownish, and scattered peripherally. An orange pigmented body also appeared in the epicone. The apical groove appeared vase-like as previously described. Under epi-fluorescence microscopy, a pumpkin-like structure was clearly observed, in which cells were embedded. Cells were observed to exit from the structure, which led us to a hypothesis that the structure may provide cells a shelter to avoid predation or to respond to other stresses. The phylogenetic analyses based on partial LSU rDNA sequences indicated that M. fulvescens from the Jiaozhou Bay was grouped with M. fulvescens populations from other origins and closely related to the clade of M. polykrikoides. Our morphological observations and phylogenetic analyses together confirmed the presence of M. fulvescens in China and our monitoring has also observed the species dominant in the dinoflagellate community of the Jiaozhou Bay in the early autumn of 2015, which alerted us to continually monitor this bloom-forming species in the region.

An annotated list and molecular data on larvae of gryporhynchid tapeworms (Cestoda: Cyclophyllidea) from freshwater fishes in Africa.

An annotated list of larvae (metacestodes) of gryporhynchid tapeworms (Cestoda: Cyclophyllidea) from freshwater fishes in Africa is provided with numerous new host and geographical records. Newly collected materials from Burundi, Democratic Republic of the Congo, Kenya, Madagascar, Namibia, Senegal, South Africa, Sudan and Zimbabwe practically double the total number of species reported from African fish so far. We confirm the occurrence of 16 species (five unidentified to the species level and most likely representing new taxa) belonging to the genera Amirthalingamia Bray, 1974 (1 species), Cyclustera Fuhrmann, 1901 (2 species), Dendrouterina Fuhrmann, 1912 (1 species), Neogryporhynchus Baer & Bona, 1960 (1 species), Paradilepis Hsü, 1935 (4 species), Parvitaenia Burt, 1940 (5 species), and Valipora Linton, 1927 (2 species). Additionally, metacestodes of four unidentified species of Paradilepis and Parvitaenia are reported from fish for the first time. Rostellar hooks of all species are illustrated and their measurements are provided together with a host-parasite list. The molecular phylogenetic analysis based on partial LSU rDNA sequences offers the first insight into the internal phylogenetic relationships within the family. Together with the morphological observations, the present study provides a taxonomic baseline for future studies on this largely neglected, but widely distributed and relatively frequent, group of parasites of African fishes, including economically important cichlids like tilapias and cyprinids.

Panagrellus levitatus sp. n. (Rhabditida: Panagrolaimidae), a nematode suppressing Drosophila melanogaster in laboratory cultures

A new nematode species recovered from the laboratory culture ofDrosophila melanogasteris described and illustrated. The mass reproduction ofPanagrellus levitatussp. n. in the fly culture occurred several times and resulted in a significant reduction of the fly population. Nematode outbreaks happened after the introduction ofD. melanogasterto the culture from natural sources. The new species is morphologically similar toP. ulmi. Partial LSU rDNA and SSU rDNA sequences were obtained and subjected to phylogenetic analysis that demonstrated the affinity of the new species withPanagrellussp. ‘MC2014’ from a red palm weevil. For the first time, the dauer juveniles ofPanagrelluswere described.

Aphelenchoides gorganensis n. sp. (Nematoda: Aphelenchoididae), a new species from Iran

Aphelenchoides gorganensis n. sp. was isolated during a survey of nematodes associated with bark samples of oak trees (Quercus sp.) in northern Iran. The new species differs from all other Aphelenchoides species by the presence of a shallow constriction in the middle of the well-developed elliptic-cylindrical stylet knobs. It is also characterized by an annulated rectangular-shaped cephalic region, offset from the body by a shallow constriction, displaying four lateral lines and two pairs of genital papillae located adanal and post-cloacal. Rose-thorn-shaped spicules each have a broadly-rounded apex and moderately-developed rounded rostrum and capitulum. The conical tail terminates in one peg, having four processes in a fixed and regular arrangement in both sexes. Based upon its diagnostic morphological characteristics and phylogenetic analyses based on partial SSU and LSU rDNA sequences, the new species resembles A. ritzemabosi. However, A. gorganensis n. sp. clearly differs from this species by having a different shape of stylet knobs, a different number of caudal papillae, a shorter post-uterine sac and ca 3.7% sequence divergence.

Morphological and Molecular Studies on <i>Termitomyces</i> Species of Menge District, Asossa Zone, Northwest Ethiopia

Despite the extensive study on plant and animal biodiversity in Ethiopia, our knowledge of microbial diversity in general and macrofungal diversity in particular is very limited. Thus, as part of the ongoing study on macrofungal diversity of the country, this is the first report on morphological and molecular taxonomy of the genus Termitomyces in the country. In this particular report, we identified seven Termitomyces species collected from Menge Districts, Asossa Zone, Benshangul Gumuz region. Identification was based on morphological characteristics and partial LSU rDNA sequences. The results of morphological identification of each of our collection were supported with molecular investigation. Phylogenetic analysis of partial LSU rDNA sequences of 7 Ethiopian Termitomyces species using distance, Parsimony measurements and Maximum Likelihood presented similar inferred trees that only had minor differences. Based on these phylogenetic analyses of the partial LSU rDNA sequences, 7 species of Termitomyces were identified as T. aurantiacus, T. clypeatus, T. eurrhizus, T. letestui, T. microcarpus, T. robustus and T. schimperi. The inferred ML cladogram revealed both Asian and African Termitomyces samples in our analysis demonstrated a well-supported monophyletic group with bootstrap value of 99%. Moreover, the monophyletic tree from pure Ethiopian Termitomyces collection and a combination of African and Asian Termitomyces samples suggested their common origin. However incorporating more samples, more DNA markers and extensive analyses may reveal the true link among the sequences from different regions of the world. All the species reported are used for culinary purposes by the native community and few of them (T. microcarpus and T. clypeatus) are used for treatment of indigestion and malnutrition.

The genus Lolia from freshwater habitats in Egypt with one new species

A new species of Lolia and the sexual morph of L. aquatica are described, with illustrations, from decayed submerged wood in the River Nile, Egypt. Molecular phylogenetic analyses of partial SSU and LSU rDNA sequence data place the sexual morph of L. aquatica and the new species, L. dictyospora in a monophyletic clade, distant from the closely related fungi in the freshwater family Lindgomycetaceae. Pairwise LSU rDNA sequence alignment of the sexual/asexual morphs of L. aquatica are 99% similar. Lolia species are characterized by pseudothecial or stromatic, immersed to erumpent, dark-brown to black, coriaceous to sub-carbonaceous ascomata, cylindric-clavate, bitunicate, fissitunicate, short pedicellate asci, yellow to reddish-brown, phragmo- or dictyospores, surrounded by prominent gelatinous sheath. Lolia species are phylogenetically distant from the closely related genera: Leptosphaeria (Leptosphaeriaceae) and Massariosphaeria (Pleosporales incert. sed.). Lolia differs from Leptosphaeria in having a prominent large gelatinous ascospore sheath, while this is absent in Leptosphaeria species. Lolia differs from Massariosphaeria in having smaller ascospores and fewer transverse septa. Based on molecular data and morphology, a new species, Lolia dictyospora, is established.

Morphological and molecular data support the monophyletic nature of the genus Pratylenchoides Winslow, 1958 (Nematoda: Merliniidae) and reveal its intrageneric structuring

The genus Pratylenchoides has recently been transferred from the family Pratylenchidae to Merliniidae. To investigate further the relationship between these ‘Pratylenchus-like’ species (residing in the subfamily Pratylenchoidinae) and the subfamily Merliniinae, more than 500 soil samples were collected from various natural and agronomic habitats in the northern and north-western provinces of Iran. In this study, paratypes or populations of 22 species of Pratylenchoides, including the Iranian populations of P. alkani, P. crenicauda, P. erzurumensis, P. laticauda, P. nevadensis, P. ritteri and an undescribed species, were studied. Intra- and interspecies variation of the following characters were investigated: position of the pharyngeal gland nuclei, shape of female and male head, striation of female tail terminus, number of lateral lines at mid-body and in phasmid region for females, presence of intestinal fasciculi, and shape of sperm. Combining morphological and molecular data prompted us to propose two clusters of related Pratylenchoides species. One cluster includes P. crenicauda, P. variabilis and P. erzurumensis, whereas the second cluster consists of P. alkani, P. nevadensis and P. ritteri. Our data point to a sister positioning of P. magnicauda vis-à-vis all Pratylenchoides species included in this research. Analyses of SSU rDNA (for family and subfamily relationships) and partial LSU rDNA sequences (for intrageneric relationships) data revealed: i) the distal and nested positioning of all Pratylenchoidinae within the Merliniidae; ii) the single transition from ectoparasitism to migratory endoparasitism within the family Merliniidae corresponds with the current subfamily partitioning; and iii) support for the monophyletic nature of the genus Pratylenchoides.

Tirisporellaceae, a New Family in the Order Diaporthales (Sordariomycetes, Ascomycota)

Abstract Tirisporella beccariana, a monotypic marine ascomycete, commonly occurs on the lower base of fronds and rhizomes of the brackish water palm, Nypa fruticans. This fungus has globose to subglobose ascomata, immersed to superficial, ostiolate and periphysate, three layered peridium. It has cylindrical bitunicate-like asci, short peduncle, thick-walled, brown ascospores, 4–7 septate, falcate to lunate, verrucose, apical cell appendaged, hyaline basal cell pointed. Taxonomically it was originally assigned to the Dothideomycetes incertae sedis based on the bitunicate-like asci. During on-going investigations of mangrove fungi in Thailand, the fungus was found in intertidal regions in Trang and Trat provinces, Thailand. Maximum parsimony, likelihood and Bayesian analyses using partial SSU and LSU rDNA sequences place T. beccariana in the Diaporthales, Sordariomycetidae, Sordariomycetes; however, the familial level relationship was unidentified. This genus forms a distinct clade with Thailandiomyces bise...

Diversity and Phylogeny of Gymnodiniales (Dinophyceae) from the NW Mediterranean Sea Revealed by a Morphological and Molecular Approach

The diversity and phylogeny of dinoflagellates belonging to the Gymnodiniales were studied during a 3-year period at several coastal stations along the Catalan coast (NW Mediterranean) by combining analyses of their morphological features with rDNA sequencing. This approach resulted in the detection of 59 different morphospecies, 13 of which were observed for the first time in the Mediterranean Sea. Fifteen of the detected species were HAB producers; four represented novel detections on the Catalan coast and two in the Mediterranean Sea. Partial rDNA sequences were obtained for 50 different morphospecies, including novel LSU rDNA sequences for 27 species, highlighting the current scarcity of molecular information for this group of dinoflagellates. The combination of morphology and genetics allowed the first determinations of the phylogenetic position of several genera, i.e., Torodinium and many Gyrodinium and Warnowiacean species. The results also suggested that among the specimens belonging to the genera Gymnodinium, Apicoporus, and Cochlodinium were those representing as yet undescribed species. Furthermore, the phylogenetic data suggested taxonomic incongruences for some species, i.e., Gyrodinium undulans and Gymnodinium agaricoides. Although a species complex related to G. spirale was detected, the partial LSU rDNA sequences lacked sufficient resolution to discriminate between various other Gyrodinium morphospecies.