This research delves into the morphological and anatomical intricacies of Nigella sativa L. (Ranunculaceae), commonly known as black cumin, through meticulous examination of various accessions collected from diverse geographical regions in India. Morphological studies revealed distinct characteristics such as the linear to lanceolate alternate leaves, black capsule fruit housing seeds, and growth parameters including germination time, maturation period, and yield per plant. Notably, certain accessions exhibited superior attributes in terms of plant height, root length, and seed yield. Anatomical investigations unveiled detailed structures of stems, roots, seeds, and capsules. Stem anatomy exhibited a multi-cornered structure with specific features like uniseriate epidermis with non-glandular trichomes, parenchymatous cortex with chlorenchymatous and sclerenchymatous cells, and distinct vascular bundle arrangements. Root anatomy depicted a circular cross-section with well-defined layers including epidermis, cortex, and xylem with prominent oil droplets. Seed anatomy displayed layers of epidermis, parenchyma, pigmented layer, endosperm, and a central embryo. Moreover, this study identified novel cells in the stem cortex and observed variability in carpel numbers among different accessions. The findings contribute significantly to the understanding of N. sativa morphology and anatomy, shedding light on previously unexplored aspects and emphasizing the need for further investigation into the variability within and among accessions.