In this study, the technique of fluorescence spectroscopy coupled with chemometric methods is used to analyse samples of Lake Chad Spirulina “Arthrospira platensis” (AP), either harvested and conditioned by using the traditional method at different seasons or industrially processed. The content of minor fluorescent nutrients is investigated. To this end, fluorescence excitation-emission matrices (EEMs) of 46 AP samples are recorded in aqueous solution. Synchronous fluorescence (SF) spectra are extracted from these EEMs and their important features are compared to those of PARAFAC methods. Synchronous fluorescence scanning allows different AP samples to be characterized in a single scan. The SF and PARAFAC methods yielded two groups of fluorescent compounds; the first group, consisting of vitamin-like molecules, shows excitation/emission (ex/em) peaks at 340/460, 390/462, 370/440 and 450/526 nm, attributed to caffeic acid, vitamin K, E and riboflavins respectively, while the second group, consisting of pigments, shows ex/em peaks at 610/654, 590/630 and 570/644 nm, attributed to phycocyanins, C-phycocyanin and allophycocyanin. Our fluorescence data showed that while both vitamins and pigments are present in AP during the rainy season, only fluorescent components of vitamin-like compounds are present during the dry season. PCA methods allowed classifying different AP samples according to their geographic origin and harvesting season. Fluorescence spectroscopy therefore appears to be a powerful technique for rapidly assessing the chemical composition of AP.