The late Paleozoic is a period of pronounced climatic and tectonic change, characterized by the onset and disappearance of continental-scale glaciers across polar Gondwana, the formation of Pangea, and widespread large igneous province volcanism. The low-latitude equatorial tropics are assumed to be places of persistent warm and wet climatic conditions throughout the Phanerozoic, which through intense silicate weathering, exert a major influence on Earth’s climate via the consumption of atmospheric carbon through carbonic hydrolytic weathering, formation of clay minerals and deliverability of alkalinity to ocean basins. Here we investigate the late Paleozoic sedimentary record of the Eastern Shelf of the Midland Basin in order to refine the climatic and provenance record of this region. The Eastern Shelf of the Midland Basin was situated within the equatorial tropics throughout the late Paleozoic and was connected to the open ocean through a network of fluvial systems that drained into the marine Midland Basin. We present new U-Pb zircon geochronology (19 samples, 2591 analyses) and sedimentary petrography (11 samples, 5800 grain counts), which we integrate with previously published paleobotany, paleosol chemistry and clay mineralogy to provide a holistic climate and tectonic record from this region. We observe major changes in sedimentary processes that we attribute to the formation of Pangea, eustatic changes linked to a dynamic high-latitude glaciation and teleconnections with low latitude hydrology, and a long-term shift in the Earth climate system all of which result in a dynamic sediment provenance history. Late Pennsylvanian and earliest Permian deposits are enriched in zircons with local affinity and interpreted to reflect local uplift and repeat incision across the basin margin, the latter a result of glacioeustatic forcing during an “everwet” climate. A major paleoenvironmental shift occurs in the late early Permian, which is reflected by the transition from fluvial to mixed fluvial-aeolian and ultimately aeolian dominant sedimentation by the late Permian. The transition from fluvial to aeolian dominant sedimentation is accompanied by a change in clay chemistry, sedimentary rock textual maturity, paleosol morphology and a threefold increase in Paleozoic zircons in the mid to late Permian strata. Widespread loess deposits across equatorial Pangea during the Permian have been used to argue for the possibility of equatorial glaciers situated in highland settings during the early Permian. Conversely, our data suggest initiation of a substantial component of aeolian deposition across the field areas, which is coincident with widespread ice loss across high latitude Gondwana, and ultimately highlights the teleconnections between high latitude glaciation and the low latitude hydrologic cycle.