Acrocentric Pairs Research Articles

Cytogenetics of Alismataceae and Limnocharitaceae: CMA/DAPI banding and 45S rDNA sites

Species belonging to the Alismataceae (Echinodorus) and Limnocharitaceae (Hydrocleys and Limnocharis) families were analysed by banding with CMA/DAPI fluorochromes, C/CMA/DAPI banding, and in situ hybridization (FISH) with probes that recognise 45S rDNA. All species of Echinodorus presented 2n = 22, but only in E. lanceolatus were DAPI+ telomeric bands in seven chromosome pairs observed. A bimodal karyotype and GC-rich heterochromatin preferably located in two smaller acrocentric pairs that generally corresponded to the number of sites of 45S rDNA. A similar pattern of bands was observed in both Limnocharis species (2n = 20), but the two differed with respect to 45S rDNA, with L. laforestii showing only two sites. Hydrocleys nymphoides and H. martii had a chromosome number of 2n = 16, but the position of the GC-rich heterochromatin associated with the satellite differed among chromosomal types. In this work, the cytotaxonomic implications of these patterns are discussed and correlated with previous data from the literature.

Karyotype analysis of the pumpkinseed Lepomis gibbosus (Actinopterygii, Centrarchidae) by chromosomal banding and in situ hybridization

Summary Sunfish are widely distributed in their native North American freshwaters and in many other geographic regions, including Europe. In this work the cytogenetics of L. gibbosus were studied. In particular, the authors localized the heterochromatic regions and the major and minor ribosomal gene families. The nucleolar organizer region was localized terminally in the short arm of only one pair, a large acrocentric pair, using both FISH and silver staining. Furthermore, the 5S ribosomal gene family was also localized by FISH in only one pair, in the centromeric region of the smallest chromosome pair. NOR and 5S rDNA regions were both C-positive and CMA3 positive. The CMA3 positivity of the 5S ribosomal cluster is uncommon in fish, however, a similar situation has been found in M. salmoides, the only other centrarchid species studied with the same techniques. Moreover, the 5S ribosomal gene was sequenced and its molecular structure analysed.

Description of the karyotype of Rhagomys rufescens Thomas, 1886 (Rodentia, Sigmodontinae) from Southern Brazil Atlantic forest

Rhagomys rufescens (Rodentia: Sigmodontinae) is an endemic species of the Atlantic forest from Southern and Southeastern Brazil. Some authors consider Rhagomys as part of the tribe Thomasomyini; but its phylogenetic relationships remain unclear. Chromosomal studies on eight specimens of Rhagomys rufescens revealed a diploid number of 2n = 36 and a number of autosome arms FN = 50. GTG, CBG and Ag-NOR banding and CMA3 /DAPI staining were performed on metaphase chromosomes. Eight biarmed and nine acrocentric pairs were found in the karyotype of this species. The X and Y chromosomes were both acrocentric. Most of the autosomes and the sex chromosomes showed positive C-bands in the pericentromeric region. The X chromosome showed an additional heterochromatic block in the proximal region of the long arm. Nucleolus organizer regions (NORs) were located in the pericentromeric region of three biarmed autosomes (pairs 4, 6 and 8) and in the telomeric region of the short arm of three acrocentrics (pairs 10, 12 and 17). CMA 3 /DAPI staining produced fluorescent signals in many autosomes, especially in pairs 4, 6, and 8. This study presents cytogenetic data of Rhagomys rufescens for the first time.

Cytogenetic study on the European brown hare (Lepus europaeus Pallas, 1778) (Mammalia: Lagomorpha) in Turkey

Conventional and GTC, CTC, and AgNO_3 banded karyotypes of brown hares (Lepus europaeus Pallas, 1778) from Turkey are described for the first time. All specimens possessed a diploid number of 2n = 48 chromosomes and a fundamental autosomal number of NFa = 88. The chromosome set consisted of 8 metacentric and submetacentric pairs and 15 subtelocentric and acrocentric pairs decreasing in size from large to small. The X chromosome was a large submetacentric while the Y was a small acrocentric. In contrast with the other specimens, the Kilis specimen possessed a duplication in the long arm of one of the subtelocentric chromosomes. The G-banding pattern of the chromosomes was similar to that given for the genus. Variation was found in the C-banded karyotype and the distribution of NORs.

Gene Mapping of 18S and 5S rDNA Genes in the Karyotype of the Three-Spot Gourami Trichogaster trichopterus (Perciformes, Osphronemidae)

Ornamental fish culture is important as an economic activity and for biodiversity conservation as well. The species of the genus Trichogaster (Perciformes, Osphronemidae), popularly known as three-spot gourami, are among the several commercial species raised around the world. In the present work, eight specimens of Thrichogaster trichopterus from aquarium trade facilities were analyzed. The karyotype was composed of 23 pairs of subtelo/acrocentric chromosomes. Fluorescent in situ hybridization allowed identifying the 18S ribosomal gene at telomeric region on long arms of the largest acrocentric pair. On the other hand, the 5S rRNA gene is located at a proximal region on a pair of medium-sized chromosomes. Such information is extremely useful in face of the risks of introduction and the development of ornamental fish trade, once many fish species can be identified only by genetic studies.

Chromosome polymorphism in Bulgarian populations of the striped field mouse (Apodemus agrarius Pallas 1771)

Chromosome polymorphism in Bulgarian populations of the striped field mouse (Apodemus agrarius Pallas, 1771) has been described. The diploid chromosome number is 2n=48 (NFa = 54). In the karyotype of 3 specimens from the Iskar region, the presence of an additional B chromosome has been established for the first time. The autosomes are 19 acrocentric pairs, continuously decreasing in size, and 4 pairs of bi-armed chromosomes, barely distinguishable by size and location of the centromere. Specimens with 3 pairs of metacentric chromosomes were firstly described in Bulgaria for the regions of Iskar and Omurtag. The localization of heterochromatin in the centromeric regions of the chromosomes, blocks of heterochromatin of different sizes, as well as intercalated bands, distinguishable in weakly spiraled chromosomes are found. Telomeric heterochromatin is present in the largest autosomal pair and in two of the middle-sized autosomal pairs. The largest and smallest pairs of be-armed chromosomes do not have centromeric heterochromatin, whereas all the other autosomal pairs do. The presence of a NOR in 6 chromosomal pairs is established. Two of the pairs exhibited pericentromeric NORs, whereas the other 4 displayed telomeric NORs. The karyotype analysis illustrates the chromosome and genome polymorphism of A. agrarius in Bulgarian populations.

Cytogenetics of Alismatales s.s.: chromosomal evolution and C-banding

Ten species of Alismatales, five of Alismataceae, four of Limnocharitaceae and one of Hydrocharitaceae were studied with regard to chromosome number, chromosome morphology, and pattern of Giemsa C-bands. The genus Echinodorus had a diploid chromosome number of 22 for all species that were analyzed and a karyotypic formula of 2m + 20a. For the family Limnocharitaceae, Hydrocleys nymphoides had a diploid chromosome number of 16, Hydrocleys martii (4m + 2sm + 10a) had a diploid chromosome number of 16, Limnocharis flava had a diploid chromosome number of 20 and L. laforestii (4m + 16a) had a diploid chromosome number of 20. The only species of Hydrocharitaceae that was studied exhibited a karyotype that consisted of a diploid chromosome number of 28 and a karyotypic formula of 4m + 6sm + 4a. The distribution pattern of the C-banded karyotype in Echinodorus showed four blocks of constitutive heterochromatin in two smaller acrocentric pairs that corresponded to the heterochromatic NORs. In E. lanceolatus, 14 bands in the termini of the arms beyond the heterochromatic NORs of seven acrocentric pairs were also observed. Idiograms are presented and the karyotypic evolution patterns for the studied groups are discussed.

The G- and Q-band karyotype of Böhm's or Grant's zebra (Equus burchelli böhmi).

The modal chromosome number of Bohm's zebra (Equus burchelli bohmi) is 44. One female and one male were investigated. The autosomes were constituted by 12 pairs of metacentric, four pairs of submetacentric, one pair of subtelocentric and four pairs of acrocentric chromosomes. All the chromosomes were identified by the G- and Q-banding patterns, except two small acrocentric pairs which did not show bands. The smallest metacentric pair had indefinite satellites. In pair No. 18 one of the chromosomes had a short arm, the homologue was acrocentric. The X chromosome was submetacentric. It was the fifth longest chromosome and constituted 5.8 % of the female chromosome complement. The Y chromosome was the smallest metacentric chromosome and constituted about 1 % of the female chromosome complement. The G- and Q-banding patterns of the chromosomes were identical. A G-band diagram, an idiogram and G- and Q-band karyotypes are presented.

A Study on Karyotypes of Two Species of Anoplius (Hymenoptera: Pompilidae) in Kars Plateau, Turkey

Summary In this study, karyotypes of two Pompilidae species [Anoplius viaticus (Linnaeus 1758) and Anoplius concinnus (Dahlbom 1845)] were studied. Based on metaphase studies, it was determined that Anoplius viaticus has 2n=28 chromosomes and that their karyotypes consisted of 3 metacentric, 2 submetacentric and 9 acrocentric chromosome pairs, and the fundamental number (NF) was 38. Metaphase studies of Anoplius concinnus gave the result that it had 2n=28 chromosomes, of which karyotype consisted of 2 metacentric, 4 submetacentric and 8 acrocentric chromosome pairs, and the NF was 40. No heteromorphic sex chromosomes for each species were found.

Sorex bedfordiae has the Smallest Diploid Chromosome Number of the XY Group in the Genus Sorex (Mammalia, Soricidae)

Karyological data on the lesser stripe-backed shrew, Sorex bedfordiae, were obtained from four specimens collected on Mt. Laojun, Lijiang District, Yunnan Province, China. Three of the four S. bedfordiae specimens had karyotypes consisting of 2n=26, NFa=44, with 4 metacentric, 4 submetacentric, 2 subtelocentric, and 2 acrocentric pairs, and 1 acrocentric X and acrocentric Y. This karyotype has the smallest diploid chromosome number in the XY group in the genus Sorex. The fourth specimen of S. bedfordiae had a different karyotype consisting of an additional pair of medium-sized metacentric chromosomes, i.e., 2n=28, NFa=48. These supernumerary chromosomes appear to constitute a new chromosome group in the genus Sorex and might provide new information concerning the taxonomy of soricid species.

The karyotype ofCabassous unicinctus(Dasypodidae, Xenar-thra)

Abstract Armadillos was belonged to the Xenarthra Order, Dasypodidae family. This family has been comprising the largest number of genera and species among the Xenarthrans; eight (8) and 21, respectively. Two adult males of the species Cabassous unicinctus were analyzed in this study. Lymphocyte cultures from whole blood were used and the cells were then submitted to conventional staining by C- and Ag-NOR banding. Data regarding the number of chromosomes showed discrepancies among the species described in the literature. The 46 chromosomes observed were distributed in six large metacentric pairs, five medium submetacentric pairs, five medium and small metacentric pairs and six acrocentric pairs. The Y chromosome was classifed such as the smallest acrocentric of the group. The X chromosome was classifed as medium submetacentric, it considered atypical for mammals, because X was generally large size metacentric when it compared to the remaining karyotype. The diploid number reduction from 62 to 46 chromosom...

The taxonomic status of the endangered thin-spined porcupine, Chaetomys subspinosus (Olfers, 1818), based on molecular and karyologic data

BackgroundThe thin-spined porcupine, also known as the bristle-spined rat, Chaetomys subspinosus (Olfers, 1818), the only member of its genus, figures among Brazilian endangered species. In addition to being threatened, it is poorly known, and even its taxonomic status at the family level has long been controversial. The genus Chaetomys was originally regarded as a porcupine in the family Erethizontidae, but some authors classified it as a spiny-rat in the family Echimyidae. Although the dispute seems to be settled in favor of the erethizontid advocates, further discussion of its affinities should be based on a phylogenetic framework. In the present study, we used nucleotide-sequence data from the complete mitochondrial cytochrome b gene and karyotypic information to address this issue. Our molecular analyses included one individual of Chaetomys subspinosus from the state of Bahia in northeastern Brazil, and other hystricognaths.ResultsAll topologies recovered in our molecular phylogenetic analyses strongly supported Chaetomys subspinosus as a sister clade of the erethizontids. Cytogenetically, Chaetomys subspinosus showed 2n = 52 and FN = 76. Although the sexual pair could not be identified, we assumed that the X chromosome is biarmed. The karyotype included 13 large to medium metacentric and submetacentric chromosome pairs, one small subtelocentric pair, and 12 small acrocentric pairs. The subtelocentric pair 14 had a terminal secondary constriction in the short arm, corresponding to the nucleolar organizer region (Ag-NOR), similar to the erethizontid Sphiggurus villosus, 2n = 42 and FN = 76, and different from the echimyids, in which the secondary constriction is interstitial.ConclusionBoth molecular phylogenies and karyotypical evidence indicated that Chaetomys is closely related to the Erethizontidae rather than to the Echimyidae, although in a basal position relative to the rest of the Erethizontidae. The high levels of molecular and morphological divergence suggest that Chaetomys belongs to an early radiation of the Erethizontidae that may have occurred in the Early Miocene, and should be assigned to its own subfamily, the Chaetomyinae.

Karyotype differentiation of four Cestrum species (Solanaceae) revealed by fluorescent chromosome banding and FISH

The karyotypes of four South American species of Cestrum (C. capsulare,C. corymbosum,C. laevigatum and C. megalophylum) were studied using conventional staining, C-CMA/DAPI chromosome banding and FISH with 45S and 5S rDNA probes. The karyotypes showed a chromosome number of 2n = 2x = 16, with metacentric chromosomes, except for the eighth submeta- to acrocentric pair. Several types of heterochromatin were detected, which varied in size, number, distribution and base composition. The C-CMA+ bands and 45S rDNA were located predominantly in terminal regions. The C-CMA + /DAPI + bands appeared in interstitial and terminal regions, and the C-DAPI + bands were found in all chromosome regions. The 5S rDNA sites were observed on the long arm of pair 8 in all species except C. capsulare, where they were found in the paracentromeric region of the long arm of pair 4. The differences in band patterns among the species studied here, along with data from other nine species reported in the literature, suggest that the bands are dispersed in an equilocal and non-equilocal manner and that structural rearrangements can be responsible for internal karyotype diversification. However, it is important to point out that the structural changes involving repetitive segments did not culminate in substantial changes in the general karyotype structure concerning chromosome size and morphology.

Cytogenetic characterization of Metynnis maculatus (Teleostei; Characiformes): the description in Serrasalminae of a small B chromosome bearing inactive NOR-like sequences.

Mitotic chromosomes of Metynnis maculatus (K N e R 1860) (Teleostei, Characiformes), a fish species that occurs in the Amazon and Parana-Paraguay river basins, were analyzed for the first time by Giemsa and Ag- NOR staining, C-banding and fluorescence in situ hybridization (FISH) with 18S and 5S rDNA sequences. The basic chromosome number of the species is 2n=62 (32M+22SM+4ST+4A) and, in addition to the 62 regular chro- mosomes, one small acrocentric supernumerary B chromosome was found in part of the specimens analyzed. Four active NORs were present, and constitutive heterochromatin blocks were found in the pericentromeric region of several chromosomes. A heterochromatic block was also present in the interstitial portion of the submetacentric NOR-bearing pair and the B chromosome was entirely heterochromatic. FISH using an 18S rDNA probe con- firmed the results obtained with AgNO 3 staining, and an additional signal was also present on the B chromosomes. 5S rDNA sequences mapped only to the largest acrocentric pair. This is the first description of supernumerary B chromosomes in Serrasalminae, and this karyotype characterization may be useful in further studies about chromo- some evolution in this fish group.

The karyotype of Alouattapigra (Primates: Platyrrhini): mitotic and meiotic analyses

We describe for the first time the karyotype of the black howler monkey, Alouatta pigra. Conventional staining, G- and C-banding, and fluorescence in situ hybridization (FISH) with a peptide nucleic acid (PNA) pantelomeric probe were performed. Eight free ranging adult individuals, four males and four females, within the natural distribution of the species presented a diploid karyotype with 2n = 58. Mitotic analyses showed an autosomal complement composed of 6 submetacentric, 3 metacentric, and 19 acrocentric chromosome pairs for females, and 6 submetacentric, 3 metacentric, and 18 acrocentric pairs for males. Meiotic analyses in males revealed 27 autosomal bivalents and a quadrivalent composed of a submetacentric X₁ and acrocentric X₂, Y₁, and Y₂. The G-banded karyotype allowed us to identify pair #17 as the autosomal pair involved in the rearrangement and the morphology of the quadrivalent components. C-banding technique in metaphase I corroborated the structure of the quadrivalent showing four C+ centromeres. FISH analysis showed telomeric signals at the terminal regions of all chromosomes. No interstitial signals were detected. DNA sequence data were in accordance with those previously published for this species.

Karyotypes of three shrew species (Soriculus nigrescens, Episoriculus caudatus and Episoriculus sacratus) from Nepal

The karyotypes of three shrew species (Mammalia, Soricomorpha, Soricidae) from Nepal were examined for the first time. Based on the karyotypes and overall differences in skull size, the current Episoriculus caudatus appeared to include two distinct species: the larger E. caudatus and the smaller Episoriculus sacratus. Episoriculus sacratus has three subspecies, E. s. soluensis in Nepal and Sikkim, E. s. umbrinus in Assam, Myanmar and the Yunnan Province of China, and E. s. sacratus in the Sichuan Province of China. Soriculus nigrescens had a diploid chromosome number (2n) and fundamental number (FN), including two X chromosomes, of 64 and 92, respectively, consisting of 11 metacentric or submetacentric, two subtelocentric and 18 acrocentric pairs of autosomes, a metacentric X and an acrocentric Y chromosome. Episoriculus sacratus soluensis had 2n = 74 and FN = 126, consisting of 12 metacentric or submetacentric, 13 subtelocentric and 11 acrocentric pairs of autosomes, a submetacentric X and an acrocentric Y chromosome. Episoriculus caudatus had 2n = 60 and FN = 118, consisting of 19 metacentric or submetacentric, nine subtelocentric and one acrocentric pair of autosomes, a subtelocentric X and an acrocentric Y chromosome. The karyotypes of these three species are characterized by their large 2n and FN values compared with other Soricidae.

Comparative karyological analysis of three members of Allocreadiidae (Digenea): taxonomic and phylogenetic implications

Chromosome number and morphology were studied in three allocreadiid species from mitotic metaphases of intramolluscan stages using karyometric analysis. Bunodera luciopercae has a diploid number 2n=14, with two large pairs of metacentrics, one pair of submeta-subtelocentrics, and four pairs of acrocentrics. Karyotype of Allocreadium isoporum, 2n=14, with two large pairs of metacentrics and five pairs of acrocentrics was recognized to be closely related to that of B. lucioperca. The most conspicuous interspecific difference occurs in the centromere position of the chromosomes of the pair 3. The possible reasons of the discrepancies between data reported therein and the karyological information previously published on these two species are discussed. Crepidostomum sp. has 2n=12, with one pair of large metacentrics and five pairs of acrocentrics and is more distantly related karyologically to the other two members of the family. Evolutionary considerations based on comparison of the chromosomes of Allocreadiidae and other studied families of the suborder Xiphidiata suggest that allocreadiids are karyotypically distinct. The placement of Allocreadiidae and Opecoelidae in the superfamily Allocreadioidea is questioned.

Intrapopulational chromosome number variation in Zephyranthes sylvatica Baker (Amaryllidaceae: Hippeastreae) from Northeast Brazil

Zephyranthes Herb. is a taxonomically complex and cytologically variable group, with about 65 species of Neotropical distribution. Chromosome number variability in 32 individuals of a Zephyranthes sylvatica population from Northeast Brazil was investigated. Three cytotypes were found: 2n = 12 (one metacentric, four submetacentric and one acrocentric pairs), in 24 individuals; 2n = 12 + 1B, in five and three individuals with 2n = 18, a triploid cytotype. All diploid individuals showed chromosomes with polymorphism in pair one and two, while in triploids this polymorphism was observed in all chromosome triplets, generally with two homomorphic chromosomes and a higher or lower heteromorphic chromosome. All individuals had reticulated interfasic nucleus and a slightly asymmetric chromosome complement, with one metacentric chromosome pair and the others more submetacentric to acrocentric. These data confirm the cytological variability previously registered for the genus. Mechanisms involved in karyotypic evolution in this population are discussed.

Chromosomal analysis in Cathartidae: distribution of heterochromatic blocks and rDNA, and phylogenetic considerations

Three species of Cathartidae (Sarcoramphus papa, Cathartes aura and Cathartes burrovianus) were cytogenetically characterized by G- and C-banding. 18S-28S rDNA was used as a probe to map major ribosomal clusters. These species showed very similar karyotypes, with 2n = 80, 10 pairs of macrochromosomes, a submetacentric Z and a metacentric W chromosome. However, differences were found in the amount and distribution of heterochromatic blocks: S. papa showed heterochromatin only in the pericentromeric region and in chromosome W, while both species of Cathartes had heterochromatic blocks also in the long arm of two acrocentric pairs. Ribosomal clusters were found in a small pair in all three species. Karyotype analysis in Cathartidae revealed that this family has retained similarities to the putative avian ancestral karyotype, and placed Cathartidae in a more basal position in relation to Accipitridae and Falconidae. However, the cytogenetic data still cannot clarify the phylogenetic relationship between this family and other groups, such as Ciconiidae, considered its sister-group according to nucleic acid hybridization studies.

Cytogenetic analysis in western Atlantic snappers (Perciformes, Lutjanidae)

The Lutjanidae or snappers are a family of perciform fishes, mainly marine but with some members living in estuaries and entering fresh water to feed. Some are important food fish. Cytogenetic data for Lutjanidae are scarce. In the present work, we cytogenetically characterized through conventional Giemsa staining techniques, Ag-NOR and C-banding the species Ocyurus chrysurus, Lutjanus analis, L. alexandrei, L. cyanopterus, L. jocu and L. synagris, all found along the Brazilian coast. Karyotype analysis of all six species showed a modal value of 2n = 48 acrocentric chromosomes. Single NORs were found at pericentromeric position on the long arms of the 2nd pair in O. chrysurus, L. alexandrei and L. cyanopterus, on the 5th pair in L. analis and on the 23rd pair in L. synagris. The species L. jocu presented multiple NORs located on the 2nd pair at a pericentromeric region and on the 5th pair at a telomeric region. Heterochromatic blocks were identified at the centromeric region of all chromosomes of the studied species. These results indicate that, despite of the chromosomal stability of this family, a relative structural diversification seems to have occurred in the chromosome evolution of the group. Such diversification was evidenced by divergent number and location of ribosomal sites among species. The NOR-bearing pairs represented an efficient cytotaxonomic marker for most of the analyzed species. The data suggest that the presence of interstitially located single NORs on a large acrocentric pair should represent a basal condition for lutjanids.