Paddy Soil Research Articles

Four birds with one stone: applying nitrification inhibitor on the basis of percarbamide restores yield, decreases fungicide residue, enhances soil multifunctionality and stimulates bacterial community.

Fungicide residues were frequently detected in vegetables and soils, which severely affected crop yields and qualities. Reasonable nitrogen management might promote yields and decrease fungicide carbendazim residues in plant-soil systems. Current study explores comprehensive relationships among carbendazim residues, crop yields, soil multifunctionalities and endophytic and soil bacterial communities after applying nitrification inhibitors (3,4-dimethylpyrazole phosphate and dicyandiamide) and percarbamide to different soils. Combined nitrification inhibitor and percarbamide additions produced multi-effects on restoring yields, declining fungicide residues, promoting soil multifunctionalities and stimulating bacterial communities. Relative to the control, percarbamide application promoted carbendazim dissipations in upland soils but decreased bacterial community diversities and stabilities in different soils. Compared to exclusive percarbamide, extra dicyandiamide applications decreased carbendazim residues by 25.8% in upland soils and 70.2% in paddy soils, declined carbendazim residues in carrots via improving soil pH, ammonium nitrogen (NH4 +-N) and Proteobacteria ratios. Relative to percarbamide application alone, extra dicyandiamide addition promoted the dry carrot yields by 133.2% in upland soils and 33.5% in paddy soils via promoting soil NH4 +-N, Acidobacteriota and Actinobacteriota ratios and bacterial community diversities and stabilities. Upland soil multifunctionality improvements diminished soil carbendazim residues via promoting soil pH and NH4 +-N, and paddy soil multifunctionalities and endophytic bacterial community structures generated negative influences on carrot carbendazim residues. Our study suggested that nitrification inhibitor on the basis of percarbamide generated multi-effects on the different crop-soil systems: restoring carrot yields, reducing carbendazim contents, promoting soil multifunctionalities and stimulating bacterial community diversities and stabilities. © 2024 Society of Chemical Industry.

Isolation of Heavy Metal-Tolerant and Anti-Phytopathogenic Plant Growth-Promoting Bacteria from Soils.

In this study, by isolating multifunctional soil bacteria that can promote plant development, resist heavy metals, exhibit anti-phytopathogenic action against plant diseases, and produce extracellular enzymes, we hope to improve the effectiveness of phytoremediation techniques. To isolate multifunctional soil bacteria, we used soils with diverse characteristics as isolation sources. To look into the diversity and structural traits of the bacterial communities, We conducted amplicon sequencing of the 16S rRNA gene on five types of soils and predicted functional genes using Tax4Fun2. The isolated bacteria were evaluated for their multifunctional capabilities, including heavy metal tolerance, plant growth promotion, anti-phytopathogenic activity, and extracellular enzyme activity. The genes related to plant growth promotion and anti-phytopathogenic activity were most abundant in forest and paddy soils. Burkholderia sp. FZ3 and FZ5 demonstrated excellent heavy metal resistance (≤ 1 mM Cd and ≤ 10 mM Zn), Pantoea sp. FC24 exhibited the highest protease activity (24.90 μmol tyrosine·g-DCW-1·h-1), and Enterobacter sp. PC20 showed superior plant growth promotion, especially in siderophore production. The multifunctional bacteria isolated using traditional methods included three strains (FC24, FZ3, and FZ5) from the forest and one strain (PC20) from paddy field soil. These results indicate that, for the isolation of beneficial soil microorganisms, utilizing target gene information obtained from isolation sources and subsequently exploring target microorganisms is a valuable strategy.

Differential effects of pH on cadmium accumulation in Artemisia argyi growing in low and moderately cadmium-contaminated paddy soils

BackgroundPhytoremediation is affected by physical and chemical properties of the soil such as soil pH, moisture, and nutrient content. Soil pH is a key element influencing Cd bioavailability and can be easily adjusted in agricultural practices. The soil pH level may relate to the effectiveness of phytoremediation; however, this has not been extensively investigated. In the current study, we evaluated the effect of Cd contamination level (0.56 and 0.92 mg/kg) and soil pH (5, 6, and 7) on Cd accumulation and allocation in Artemisia argyi, a fast-growing perennial crop.ResultsOur results indicated that higher soil Cd concentrations reduce A. argyi biomass, and the loss of the root mass was particularly significant. Higher soil pH decreased Cd content in stems and roots of A. argyi cultivated in moderately Cd-polluted soil, and increased Cd content in stems and roots of the plant grown in low Cd-polluted soil. Higher soil pH decreased the percentage of Cd distributed in the soluble fraction and cell walls and increased the percentage of Cd in the organelles of leaf cells for moderate soil Cd levels. The bioconcentration and translocation factor exceeded 4.0 and 1.0, respectively, across all tested treatments, indicating that A. argyi is a promising candidate for phytoremediation. Notably, the effects of soil pH on Cd accumulation and subcellular distribution in A. argyi differed between low and moderately Cd-contaminated soils.ConclusionAdjustments to soil pH based on the degree of Cd contamination can enhance Cd extraction by A. argyi, thereby reducing the overall remediation cycle of cadmium-polluted paddy fields of South China.Graphical

A New Approach to Differentiate the Causes of Excessive Cadmium in Rice: Soil Cadmium Extractability or Rice Variety

In order to effectively decrease cadmium (Cd) in rice grains in contaminated paddy soil and maintain the safe production of rice, identifying excessive Cd in rice caused by rice varieties or soil Cd is critical, but it is currently lacking. In the present study, the soil ethylenediaminetetraacetic acid (EDTA)-extractable Cd (EDTA-Cd) and the bioaccumulation factors of rice based on EDTA-Cd (BCFEDTA-Cd) were used to develop an approach to identify excessive Cd in rice caused by rice varieties or soil Cd. Based on an empirical soil–plant transfer model and species sensitivity distribution (SSD), BCFEDTA-Cd and EDTA-Cd were divided into five grades. The results showed that the five grades of the EDTA-Cd (minimum value less than 0.11 mg/kg and maximum value greater than 2.93 mg/kg) and BCFEDTA-Cd (minimum value less than 0.09 and maximum value greater than 1.40) were classified in the normal soil pH range. Further, the conversion equation between EDTA-Cd and diethylene triamine pentaacetic acid (DTPA)-Cd was obtained through linear regression analysis using 67 sets of soil data from the literature. In addition, the four selected rounding thresholds for the percentage of EDTA-Cd to total soil Cd (EDTA-Cd) (%) were 52.5, 67.5, 82.5, and 97.5%. A selected soil EDTA-Cd (%) (about 75%) can be used to identify the status of soil bioavailability, especially in soil with high background Cd. Finally, a set of 1084 pairs of rice and soil data for Cd-contaminated soils was used to investigate the respective contributions of rice varieties and soil Cd when Cd in rice exceeds the limit (0.2 mg/kg). Based on field experiment data, a systematic identification approach for the causes of rice Cd exceeding the limit, soil Cd or rice variety, was established and applied. In conclusion, under Cd exposure conditions, the importance of the causes of Cd in soil and rice varieties can be identified, and their contributions can be distinguished, thus helping to identify the causes of Cd contamination in rice.

Exploring the effect of fertilizer application on yield and decoding CO2 flux under flooded paddy conditions towards sustainable agriculture

The impact of organic and inorganic nutrient management on the emission of carbon dioxide (CO2), soil properties such as available nutrients, microbial population and soil organic carbon (SOC) were investigated in paddy (Oryza sativa L.) field (at 8o 46’ N Latitude and 77o 42?’ E Longitude) under flooded condition during late pishanam season in 2023-2024. The treatments were designed to observe the effects of applying fertilizer based on the soil test crop response (100 % STCR-based NPK) that had been modified by organic amendments, which include absolute control (unfertilized), inorganic fertilizers, sole application of organic amendments (Farm yard manure, Green leaf manure, Vermicompost and Poultry manure) and combined these organic amendments with inorganic fertilizers. The main objective of this study is to understand the intricate relationship between fertilizers and carbon flux in paddy soils, which is crucial for developing sustainable agricultural practices that minimize environmental harm while ensuring food security. The observation of the experimental field study reported that the combined application of poultry manure at the rate of 5 tonnes per hectare with 100% STCR-based inorganic fertilizer recorded maximum yield and yield attributes. The treatment combination of poultry manure + inorganic fertilizer enhanced in sequestrating the soil organic carbon (0.67%) resulted in higher grain yield (5972 kg ha-1) and also observed that this combination will limit the emission of CO2 to the atmosphere. Therefore, it could be a better choice for carbon storage and higher productivity in a sustainable rice cropping system.

Health Risk Assessment for Potential Toxic Elements in the Soil and Rice of Typical Paddy Fields in Henan Province

The accumulation of potential toxic elements in agricultural soil and rice is of particular concern in China. However, studies on the risk assessment of these elements in regional soil–rice systems remain limited. The aim of this study is to evaluate the pollution status and potential health risk of potential toxic elements in typical paddy soil and rice in Henan Province. A total of 80 soil samples and corresponding rice samples were collected to determine the contents of Cd, Pb, As, Cr, Cu, Zn, and Ni, and to assess their potential health risks to local consumers. Results showed that the average contents of these elements in soils were below the national risk screening values in GB15618-2018. Only the average content of Cr in rice exceeded the limit in GB 2762-2022 specified by the national food safety standard. The rates of exceeding the limits for Cd, Pb, As, and Cr in rice samples were 13.89%, 15.28%, 15.28%, and 27.78%, respectively. The health risk assessment indicated that rice intake for both adults and children caused carcinogenic and non-carcinogenic health risks to varying degrees. Local residents are advised to purchase rice from outside the study area to meet their daily needs and strictly regulate the pollution of potential toxic elements within the area.

Unveiling six novel bacterial strains for fipronil and thiobencarb biodegradation: efficacy, metabolic pathways, and bioaugmentation potential in paddy soil

IntroductionSoil bacteria offer a promising approach to bioremediate pesticide contamination in agricultural ecosystems. This study investigated the potential of bacteria isolated from rice paddy soil for bioremediating fipronil and thiobencarb, common agricultural pesticides.MethodsBacterial isolates capable of degrading fipronil and thiobencarb were enriched in a mineral salt medium. A response surface methodology with a Box-Behnken design was utilized to optimize pesticide degradation with the isolated bacteria. Bioaugmentation tests were performed in paddy soils with varying conditions.Results and discussionSix strains, including single isolates and their mixture, efficiently degraded these pesticides at high concentrations (up to 800 µg/mL). Enterobacter sp., Brucella sp. (alone and combined), and a mixture of Stenotrophomonas sp., Bordetella sp., and Citrobacter sp. effectively degraded fipronil and thiobencarb, respectively. Notably, a single Pseudomonas sp. strain degraded a mixture of both pesticides. Optimal degradation conditions were identified as a slightly acidic pH (6-7), moderate pesticide concentrations (20-50 µg/mL), and a specific inoculum size. Bioaugmentation assays in real-world paddy soils (sterile/non-sterile, varying moisture) demonstrated that these bacteria significantly increased degradation rates (up to 14.15-fold for fipronil and 5.13-fold for thiobencarb). The study identifies these novel bacterial strains as promising tools for bioremediation and bioaugmentation strategies to tackle fipronil and thiobencarb contamination in paddy ecosystems.

Mechanisms of Irrigation Water Levels on Nitrogen Transformation and Microbial Activity in Paddy Fields

Nitrogen is a vital nutrient for rice growth; however, its inefficient use often results in nutrient loss, environmental degradation, and the emission of greenhouse gases. In this study, a rice paddy simulation was conducted under different water levels (1–4 cm), incorporating a comprehensive analysis of nitrogen dynamics, environmental factors, and microbial communities to evaluate the impact of water levels on nitrogen concentrations and microbial composition. The results indicated that the water level had a greater impact on nitrogen concentrations in surface water than in soil water. Compared to low water level conditions (1 cm), the average concentrations of ammonium nitrogen, nitrate nitrogen, and nitrite nitrogen in surface water under 2–4 cm water levels decreased by approximately 53.8%, 36.7%, and 78.9%, respectively. Water levels also influenced the microbial composition and nitrogen cycling in paddy soil, with lower water levels promoting aerobic processes such as nitrification, while higher water levels facilitated anaerobic processes such as denitrification and dissimilatory nitrate reduction to ammonium. Correspondingly, microbial composition shifted, with aerobic bacteria predominating in shallow water conditions and anaerobic bacteria flourishing under deeper water. These findings suggest that optimized water management, particularly through shallow irrigation, may mitigate nitrogen loss and improve nitrogen use efficiency. Nevertheless, additional field studies are necessary to validate these results and explore their interaction with other agricultural practices.

Fe3O4/Mulberry Stem Biochar as a Potential Amendment for Highly Arsenic-Contaminated Paddy Soil Remediation

Magnetite-loaded biochar has recently received attention owing to its ability to remove arsenic from contaminated soil. In this study, mulberry stem biochar (MBC) and Fe3O4-loaded mulberry stem biochar (Fe3O4@MBC) were produced and used in a 100-day incubation experiment to investigate their performance in the stabilization of arsenic in paddy soil severely polluted by the As (237.68 mg·kg−1) mechanism. Incubation experiments showed that Fe3O4@MBC was more effective in immobilizing As after incubation for 100 days. Moreover, adding Fe3O4@MBC facilitated the transformation of exchangeable heavy metals into organic-bound and residual forms, thereby reducing As available concentrations, mobility, and bioavailability in the soil, and elevating slightly the soil pH and dissolved organic carbon (DOC). The concentration of TCLP-extractable As (AsTCLP) in contaminated soil was reduced from 93.85 to 7.64 μg·L−1 within 10 d, below the safety limit for drinking water set by the World Health Organization (WHO). The characterization results of Fe3O4@MBC after incubation indicated that the mechanisms for As passivation are linked to redox reactions, complexation, electrostatic attraction, surface adsorption, and coprecipitation. Conclusively, Fe3O4@MBC is a promising amendment in highly As-contaminated soil and provides a theoretical reference in such polluted paddy soil remediation.

Effects of warming and fertilization on nirK-, nirS- and nosZ-type denitrifier communities in paddy soil

The effects of fertilization on soil denitrifying microorganisms are well-documented. However, the impact of global warming on these microorganisms, particularly regarding the interaction with fertilization, remains poorly understood. Here, a 4-year field warming experiment that included experimental warming (ET) and ambient temperature control (AC), with nitrogen (N) fertilizer applied (CF) or without N fertilizer (CK), was employed to assess the response of the abundance and community of nirK-, nirS- and nosZ- type denitrifiers to warming and fertilization in paddies, and to understand their relationship with potential denitrification rate (PDR). The results showed that warming amplified the positive effect of fertilization on abundance of nirK and nirS genes, while the abundance of nosZ remained unaffected. The copies of nirK and nirS under the ET-CF treatment were notably higher than in the other treatments. In the terms of biodiversity, warming diminished the effect of fertilization on the α-diversity of nirK and nirS, but it did not influence the α-diversity of nosZ. Besides, warming intensified the effect of fertilization on the β-diversity of nirK, while the β-diversity of nirS and nosZ remained unchanged in response to fertilization. Additionally, the community structure of denitrifiers varied with warming and/or fertilization. Specifically, Mesorhizobium (nirK), Proteobacteria (nirS) and Rhizobiales (nosZ) were dominant in AC-CK treatment. In the AC-CF treatment, Proteobacteria (nirK/S), Rhizobiales (nosZ) were the main taxa. For the ET treatments (ET-CF, ET-CK), Bradyrhizobiaceae (nirK), Proteobacteria (nirS) and Alphaproteobacteria (nosZ) were predominant. Correlation analysis revealed that soil pH, carbon and N content were the primary factors influencing nirK-, nirS-and nosZ- type denitrifiers. Moreover, PDR showed a positive relationship with nirK abundance, α-diversity of nosZ, and SOC. Overall, the results demonstrate that warming can modify the response of denitrifiers to fertilization, subsequently affecting denitrification rates, a phenomenon that merits attention.

Synergistic effect between biochar and nitrate fertilizer facilitated arsenic immobilization in an anaerobic contaminated paddy soil

Nitrate nitrogen fertilizer was usually used to mitigate arsenic (As) release and mobilization in the anaerobic contaminated paddy soil. However, the effect of the interplay between nitrate fertilizer and biochar on As availability as well as the involved mechanism were poorly understood. Herein, the effects and mechanisms of biochar, nitrate fertilizer, and biochar-based nitrate fertilizer on the availability of As in the contaminated paddy soil were investigated via a microcosm incubation experiment. Results indicated that the application of biochar-based nitrate fertilizer significantly lessened the available As concentration in the contaminated paddy soil from 3.01 ± 0.03 (control group) to 2.24 ± 0.08 mg kg−1, which presented an immobilization efficiency of 26.6 % better than those of individual biochar (13.5 %) and nitrate fertilizer (17.6 %), exhibiting a synergistic effect. Moreover, the biochar-based nitrate fertilizer also facilitated the transformation of more toxic arsenite in the contaminated soil to less toxic arsenate. Further, biochar-based nitrate fertilizer increased soil redox potential (Eh), dissolved organic carbon, organic matter, and nitrate yet decreased soil pH and ammonium, which changed the microbial community in the soil, enhancing the relative abundance of Bacillus, Arthrobacter, and Paenibacillus. These functional microorganisms drove the coupled transformation between nitrate denitrification and Fe(II) or As(III) oxidation, favoring As immobilization in the anaerobic paddy soil. Additionally, the co-application of biochar offset the negative effect of single nitrate fertilizer on microbial community diversity. Overall, biochar-based nitrate fertilizer could be a promising candidate for the effective immobilization of As in the anaerobic paddy soil. The current research can provide a valuable reference to the remediation of As-contaminated paddy soil and the production of safe rice.

Comparison of Nitrous Oxide Consumption of Paddy Soils Developed from Three Parent Materials in Subtropical China

Paddy soils developed from various parent materials are widely distributed in the subtropical region in China and have a non-negligible but unclear potential to consume nitrous oxide (N2O) due to long-term flooding. This study selected three of the most common paddy soils in subtropical China, developing from quaternary red soil (R), lake sediment sand (S), and alluvial soil (C), to study their total N2O consumption and total nitrogen (N2) production using N2-free microcosm experiments. These paddy soils were treated with N2O addition (N2O treatment) or helium (He) addition (CK treatment) and incubated under flooding and anoxic conditions. The results showed that three alluvial soils (C1, C2, and C3) consumed over 99.93% of the N2O accumulated in the soil profile, significantly higher than R and S soils (p < 0.05). And the N2 production in three C soils was also significantly higher than other soils, accounting for 81.61% of the total N2O consumption. The main soil factors affecting N2O consumption in C, S, and R soils were soil clay content (p < 0.05), soil sand content (R2 = 0.95, p < 0.001), and soil available potassium (AK) (p < 0.01), respectively. These results indicate flooding paddy soils, no matter the parent materials developed, could consume extremely large amount of N2O produced in soil profiles.

Response of soil nitrogen mineralization, nitrification and denitrification to milk vetch (Astragalus sinicus L.) application in a paddy field

We conducted incubation experiments with a paddy soil collected from a long-term field experiment to explore the effect of Chinese milk vetch (Astragalus sinicus L., CMV) application on potential nitrogen (N) denitrification (PDA), nitrification (PNA), mineralization (PNM), soil chemical properties, microbial communities, enzyme activities, yields and nutrient uptake of rice under different fertilization treatments. Five treatments were included: no chemical fertilizers (C0), chemical fertilizers (C100), Chinese milk vetch (M), CMV combined with 100% chemical fertilizers (MC100) and with 80% chemical fertilizers (MC80). Results showed that the M, MC100, and MC80 treatments significantly increased PNM and PNA compared with the C100 treatment (P < 0.05). Meanwhile, the CMV application significantly increased total N, microbial biomass N, and carbon (C) concentrations, the abundances of the bacterial phylum Actinobacteria, and the genera Bradyrhizobium, Mycobacterium, Streptomyces and Reyranella, N-acetyl-glucosaminidase (NAG) activity, yields and N nutrient uptake of rice grain compared with the C100 treatment (P < 0.05). Correlation analyses indicated that grain yield and N uptake of rice, soil total N, microbial biomass C and N, the bacterial phylum Actinobacteria, the genera Bradyrhizobium, Mycobacterium, Streptomyces, Reyranella, and NAG were significantly correlated with PNM under different fertilization regimes, while microbial biomass C and N, Actinobacteria, Bradyrhizobium, and Reyranella were positively related to PNA (P < 0.05). Together, the application of CMV alone or in combination with chemical fertilizers can improve soil properties and rice growth, which may accelerate N mineralization and nitrification in this soil.

Mobility, Bioavailability, and Enrichment of Soil-Bound Phosphorus in Flood-Prone Paddy Fields: A Case Study of Kunnukara, South India.

Bioavailability, enrichment, and risk of phosphorus (P) and its fraction composition were monitored in the paddy soils of Kunnukara during the pre-cultivation and post-harvest periods in the years 2020 and 2021. Iron-bound P (≥ 105.56 ± 0.05mg/kg) was found highest among the P fractions. The bioavailability of P was recorded at peak value during the post-harvest period, contributed by organic P, Iron bound P, and loosely bound P. Principal component analysis inferred that loosely bound P was pH-dependent and significantly influenced by cation exchange, particle density, soil aggregate stability, and total organic carbon (TOC) in the post-harvest soil, whereas TOC, aluminium-bound P, and calcium-bound P in the pre-cultivation soils. Additionally, physico-chemical parameters like electrical conductivity, bulk density, specific gravity, TOC, and soil aggregate stability have a significant impact on the composition of P fractions in the soil. Bioavailable phosphorus (BAP) ranged from 642.78 ± 0.49 to 594.20 ± 1.23mg/kg during the post-harvest period. Moreover, the contribution of BAP to total P ranged from 99.45 to 99.54%, indicating the fact that soil is sufficient in BAP. Pollution indices revealed that the paddy soils are at risk of eutrophication. Phosphorus Pollution Index (PPI) > 1 exhibited moderate pollution (1.06 to 1.07) at the topsoil (0-15cm) and PPI < 1, mild pollution (0.92 to 0.99) at 15-30cm depths. The organic nitrogen index ≥ 0.133 indicates severe soil pollution in the study site. An extended fertilizer application in the field contributes to nutrient enrichment and warrants the risk of contamination in nearby riverine systems (River Periyar and River Chalakkudy).

Aqueous and Colloidal Dynamics in Size-Fractionated Paddy Soil Aggregates with Multiple Metal Contaminants under Redox Alternations.

Soil contamination by multiple metals is a significant concern due to the interlinked mobilization processes. The challenges in comprehending this issue arise from the poorly characterized interaction among different metals and the complexities introduced by spatial and temporal heterogeneity in soil systems. We delved into these complexities by incubating size-fractionated paddy soils under both anaerobic and aerobic conditions, utilizing a combination of techniques for aqueous and colloidal analysis. The contaminated paddy soil predominantly consisted of particles measuring <53, 250-53, and 2000-250 μm, with the <53 μm fractions exhibiting the highest concentrations of multiple metals. Interestingly, despite their higher overall content, the <53 μm fractions released less dissolved metal. Furthermore, glucose enhanced the release of arsenic while simultaneously promoting the sequestration of other metals, such as Pb, Zn, and Cu. Utilizing asymmetric flow field-flow fractionation, we unveiled the presence of both fine (0.3-130 kDa) and large (130-450 nm) colloidal pools, each carrying various metals with different affinities for iron minerals and organic matter. Our results highlighted the pivotal role of the <53 μm fraction as a significant reservoir for multiple metal contaminants in paddy soils, in which the colloidal metals were mainly associated with organic matter. These findings illuminated the size-resolved dynamics of soil metal cycling and provided insights for developing remediation strategies for metal-contaminated soil ecosystems.

Arsenic Methylation by a Sulfate-Reducing Bacterium from Paddy Soil Harboring a Novel ArsSM Fusion Protein.

Microbial arsenic (As) methylation is an important process of As biogeochemistry. Only a few As-methylating microorganisms have been isolated from paddy soil, hindering the mechanistic understanding of the process involved. We isolated 54 anaerobic and 32 aerobic bacteria from paddy soil with a high As methylation potential. Among the 86 isolates, 14 anaerobes, including 7 sulfate-reducing bacteria (SRB), but none of the aerobes were able to methylate arsenite [As(III)] or monomethylarsenite [MMA(III)] or both, suggesting that the As-methylating ability is much more prevalent in anaerobes than in aerobes. We performed a detailed investigation on As methylation by a SRB isolate, Solidesulfovibrio sp. TC1, and identified a novel bifunctional enzyme consisting of a fusion of As(III) S-adenosylmethionine (SAM) methyltransferase (ArsM) and a radical SAM protein. The enzyme (ArsSM) can catalyze As(III) methylation to MMA and DMA and subsequent adenosylation of DMA to form 5'-deoxy-5'-dimethylarsinoyl-adenosine (DDMAA), which is a key intermediate in the biosynthesis of arsenosugars. High concentrations of sulfide produced by SRB did not affect As(III) methylation to MMA but inhibited MMA methylation to DMA. Genes encoding ArsSM fusion proteins are widespread in anaerobes, particularly SRB, suggesting that ArsSM-carrying anaerobes may play an important role in As methylation in an anoxic environment.

Antibiotic resistance at environmental multi-media interfaces through integrated genotype and phenotype analysis

Antibiotic resistance is currently an unfolding global crisis threatening human health worldwide. While antibiotic resistance genes (ARGs) are known to be pervasive in environmental media, the occurrence of antibiotic resistance at interfaces between two or more adjacent media is largely unknown. Here, we designed a microcosm study to simulate plastic pollution in paddy soil and used a novel method, stimulated Raman scattering coupled with deuterium oxide (D2O) labelling, to compare the antibiotic resistance in a single medium with that at the interface of multiple environmental media (plastic, soil, water). Results revealed that the involvement of more types of environmental media at interfaces led to a higher proportion of active resistant bacteria. Genotypic analysis showed that ARGs (especially high-risk ARGs) and mobile genetic elements (MGEs) were all highly enriched at the interfaces. This enrichment was further enhanced by the co-stress of heavy metal (arsenic) and antibiotic (ciprofloxacin). Our study is the first to apply stimulated Raman scattering to elucidate antibiotic resistance at environmental interfaces and reveals novel pathway of antibiotic resistance dissemination in the environment and overlooked risks to human health.

Glucose addition in natural forest soils has higher biological nitrogen fixation capacity than other types of soils

Land use changes soil microbial and chemical properties, but the mechanism of biological nitrogen fixation under different land use patterns is rarely reported, so we used four types of soil: Natural forest soil (NS), healthy banana soil (HS), diseased banana soil (DS) and paddy soil (PS). Treatments included the control (CK), addition of glucose (G), addition of glucose and ammonium nitrate (GN), addition of banana straw (BS), addition of banana straw and ammonium nitrate (BSN), addition of banana root (BR), and addition of banana root and ammonium nitrate (BRN). The study found that the change of soil utilization types, glucose addition increased carbon dioxide emissions (Compared with the control, increased by 963.11%, 508.39%, 794.77% and 511.34%, respectively) and enhanced the ability of soil microbial nitrogen fixation. Importantly, natural forest soil microorganisms have a higher biological nitrogen fixation capacity compared to other types of soils. Glucose addition caused the accumulation of ammonium nitrogen (Compared with the control, increased by 426.08%, 934.21%, 420% and 1065.95%, respectively), indicating that microorganisms had higher utilization efficiency of soluble carbon and enhanced the biological nitrogen fixation capacity, and nitrogen addition caused the accumulation of ammonium nitrogen, thereby weakening the biological nitrogen fixation capacity. At the same time, glucose significantly increased the Fimicutes phylum (83.73%, 66.38%, 67.18% and 70.36%) and lowered the level of other bacterial phylums, thereby reducing the bacterial network structure, and the stability of the soil environment has decreased. Forest analysis showed that CO2 was an important factor in predicting the bacterial community structure of different soil types, an increase in CO2 content can predict drastic changes in the bacterial community. Bacteria at the Fimicutes phylum level preferred glucose, which may also have a negative effect on bacteria at the level of other phylums.

Methane Production Is More Sensitive to Temperature Increase than Aerobic and Anaerobic Methane Oxidation in Chinese Paddy Soils.

Methane emissions from paddy fields can increase under future warming scenarios. Nevertheless, a comprehensive comparison of the temperature sensitivity of methane-related microbial processes remains elusive. Here, we revealed that the temperature sensitivity of methane production (activation energy (Ea) = 0.94 eV; 95% confidence interval (CI), 0.78-1.10 eV) and aerobic (Ea = 0.49 eV; 95% CI, 0.34-0.65 eV) and anaerobic (Ea = 0.46 eV; 95% CI, 0.30-0.62 eV) methane oxidation exhibited notable spatial heterogeneity across 12 Chinese paddy fields spanning 35° longitude and 18° latitude. In addition, the Ea values of aerobic and anaerobic methane oxidation were significantly positively and negatively correlated to the latitude, respectively, while there was no significant correlation between the Ea of methane production and the latitude. Overall, there were no soil factors that had a significant effect on the Ea of methane production. The Ea of aerobic methane oxidation was primarily influenced by the contents of ammonium and clay, whereas the Ea of anaerobic methane oxidation was mainly influenced by the conductivity. Despite the variation, the overall temperature sensitivity of methane production was significantly higher than that of oxidation at a continental scale; therefore, an increase in the emission of methane from paddy fields will be predicted under future warming. Taken together, our study revealed the characteristics of temperature sensitivity of methane production and aerobic and anaerobic methane oxidation simultaneously in Chinese paddy fields, highlighting the potential roles of soil factors in influencing temperature sensitivity.

Application of straw-derived biochar: a sustainable approach to improve soil quality and crop yield and reduce N2O emissions in paddy soil.

The burning of agricultural straw is a pressing environmental issue, and identifying effective strategies for the rational utilization of straw resources is decisive for achieving sustainable development. Owing to its high carbon content and exceptional stability, straw biochar produced via pyrolysis has emerged as a key focus in multidisciplinary research. However, the efficacy of biochar in mitigating nitrous oxide (N2O) emissions from paddy soils is not consistent. A 2-year field experiment was conducted and investigated the impact of biochar derived from two feedstocks (rice straw and wheat straw, pyrolyzed at 450°C) on N2O emissions, global warming potential (GWP), greenhouse gas intensity (GHGI), nitrogen use efficiency (NUE), crop yield, and soil quality. The static chamber technique was used for collecting N2O gas samples, and concentrations were analyzed through gas chromatography methods. The treatment combinations included BR0 (control), BR1 (NPK at the recommended dose, 120:60:40kgha-1), BR2 (wheat straw biochar, 5 t ha-1), and BR3 (rice straw biochar, 5 t ha-1). The results exhibited that cumulative N2O emissions from BR2 and BR3 treatments decreased by 10.55% and 13.75% respectively, compared to BR1. Lower GWP and GHGI were observed under both biochar treatments compared with BR1. The highest rice grain yield (3.48Mgha-1) and NUE (76.72%) were recorded from BR3, which also exhibitedthe lowest yield-scaled N2O emission. We observed positive correlations between soil nitrate, ammonia and water-filled pore spaces, while NUE showed negative correlations with N2O emissions. Significant (p < 0.05) improvements in soil quality were also detected in both the biochar treated plots, indicated by increased soil pH, water holding capacity, porosity, and nutrient contents. Overall, the results suggest that applying biochar at a rate of 5 t ha-1 in paddy soil is a viable nutrient management strategy with the potential to reduce reliance on inorganic fertilizers, mitigate N2O emissions, and contribute to sustainable food production.