Pacific Northwest Estuaries Research Articles

Sediment Diatom Species and Community Response to Nitrogen Addition in Oregon (USA) Estuarine Tidal Wetlands

Sediment microalgae play an important role in nutrient cycling and are important primary producers in the food web in Pacific Northwest estuaries. This study examines the effects of nitrogen addition to benthic microalgae in tidal wetlands of Yaquina Bay estuary on the Oregon coast, USA. Liquid nitrogen fertilizers (0, 0.2, 0.5, and 1.0 gN/m2/wk during the first year of the study, and increased to 0, 15.6, 62.5, and 156 gN/m2/wk during the second year of the study) were applied weekly to four salt marshes in Yaquina Bay for two summers (2009 and 2010). Diatom species and community parameters were analyzed in response to nitrogen addition in early and late summer 2010. Nitrogen addition (N) had a significant effect on species composition and community parameters. Amphora spp. and Nitzschia palea were more dominant with higher N, while Navicula gregaria and Navicula phyllepta were more dominant with lower N. Species diversity and richness were significantly higher (p < 0.05) with lower N (3.1 ± 0.1; 40.0 ± 3.3) compared with higher N (2.4 ± 0.5; 34.5 ± 3.0). NMDS ordination displayed shifts in overall diatom assemblage with time and with N. Results suggest the microalgal communities are limited by nitrogen levels and therefore may be susceptible to changes in nitrogen loading to these systems.

Ecological periodic tables for benthic macrofaunal usage of estuarine habitats: Insights from a case study in Tillamook Bay, Oregon, USA

This study validates the ecological relevance of estuarine habitat types to the benthic macrofaunal community and, together with previous similar studies, suggests they can serve as elements in ecological periodic tables of benthic macrofaunal usage in the bioregion. We compared benthic macrofaunal Bray–Curtis similarity and the means of eight benthic macrofaunal community measures across seven habitat types in Tillamook Bay, Oregon, USA: intertidal eelgrass (Zostera marina), dwarf eelgrass (Zostera japonica), oyster (Crassostrea gigas) ground culture, burrowing mud shrimp (Upogebia pugettensis), burrowing ghost shrimp (Neotrypaea californiensis), sand and subtidal. Benthic macrofaunal Bray–Curtis similarity differed among all the habitats except ghost shrimp and sand. The habitat rank order on mean benthic macrofaunal species richness, abundance and biomass was dwarf eelgrass ≈ oyster ≥ mud shrimp ≈ eelgrass > sand ≈ ghost shrimp ≈ subtidal. The benthic macrofaunal habitat usage pattern in Tillamook Bay was, with a few exceptions, similar to that in two other US Pacific Northwest estuaries. The exceptions indicate variants of eelgrass and ghost shrimp habitat that differ in benthic macrofaunal usage perhaps due to differences in the coarseness of the sand fraction of the sediments in which they live. The similarities indicate periodic benthic macrofaunal usage patterns across the other habitat types extend over a wider geographic scale and range of environmental conditions than previously known.

Physiological consequences of parasite infection in the burrowing mud shrimp, Upogebia pugettensis, a widespread ecosystem engineer

The burrowing mud shrimp, Upogebia pugettensis, is an important ecosystem engineer throughout bays and estuaries along the Pacific coast of North America. Populations of U. pugettensis have recently declined throughout its range. A likely reason for this decline is the arrival of an invasive bopyrid isopod parasite, Orthione griffenis, which has colonised the system and increased in prevalence. We tested the following three hypotheses regarding this host–parasite system: (1) parasite infection is correlated with the volume of water processed by the host; (2) infection negatively affects host’s energetic state; and (3) infection causes feminisation in male hosts. We used several physiological and morphological measures to quantify the effects of this parasite infection on U. pugettensis. The parasite appears to have different physiological effects on male and female hosts. Our study provides mixed support for the previous theory that predicted the mechanistic interactions between this host and its new parasite. Recent examples from other systems have demonstrated that invasive parasites can have far-reaching influences when they infect ecosystem engineers. Given the negative effects of O. griffenis on U. pugettensis, this invasive parasite may have similarly large impacts on Pacific North-west estuaries throughout its invaded range.

A mechanistic model for understanding invasions: using the environment as a predictor of population success

Aim: We set out to develop a temperature- and salinity-dependent mechanistic population model for copepods that can be used to understand the role of environmental parameters in population growth or decline. Models are an important tool for understanding the dynamics of invasive species; our model can be used to determine an organism’s niche and explore the potential for invasion of a new habitat. Location: Strait of Georgia, British Columbia, Canada. Methods: We developed a birth rate model to determine the environmental niche for an estuarine copepod. We conducted laboratory experiments to estimate demographic parameters over a range of temperatures and salinities for Eurytemora affinis collected from the Nanaimo Estuary, British Columbia (BC). The parameterized model was then used to explore what environmental conditions resulted in population growth versus decline. We then re-parameterized our model using previously published data for E. affinis collected in the Seine Estuary, France (SE) and compared the dynamics of the two populations. Results: We established regions in temperature-salinity space where E. affinis populations from BC would likely grow versus decline. In general, the population from BC exhibited positive and higher intrinsic growth rates at higher temperatures and salinities. The population from SE exhibited positive and higher growth rates with increasing temperature and decreasing salinity. These different relationships with environmental parameters resulted in predictions of complex interactions among temperature, salinity, and growth rates if the two sub-species inhabited the same estuary. Main Conclusions: We developed a new mechanistic model that describes population dynamics in terms of temperature and salinity. This model may prove especially useful in predicting the potential for invasion by copepods transported to Pacific Northwest estuaries via ballast water, or in any system where an ecosystem is subject to invasion by a species that shares demographic characteristics with an established (sub)species.

Use of extractable lipofuscin to estimate age ­structure of ghost shrimp populations in west coast estuaries of the USA

Determining age in crustaceans is inherently imprecise because they molt periodically and do not retain hard structures throughout their lifespan. Morphological measurements are often used to estimate age, but variability in individual growth rate and molt frequency can result in a wide distribution of sizes in a single age class, making size a poor predictor of true age. Concentration of the autofluorescent age pigment, lipofuscin, has been shown to be directly related to actual age in many crustaceans. The present study assessed the potential of using extractable lipofuscin as a method for determining age in the ghost shrimp Neotrypaea californiensis. Following validation of the technique, lipofuscin-based aging was used to determine age structures for 3 populations of N. californiensis, and these were compared to age structures determined using traditional lengthbased methods. Analysis of lipofuscin revealed up to 13 age classes where the size-based analysis showed only 7. Comparison of mean size-at-age among populations in Oregon and Washington estuaries demonstrated that growth rate varied spatially, probably responding to site-specific environmental factors like food availability and population density. N. californiensis negatively impact oyster aquaculture in Pacific Northwest estuaries. Analysis of extractable lipofuscin proved to be a more accurate method of age determination than body-length measurements and should facilitate more indepth investigations of basic biological and ecological processes, which will benefit current efforts to develop an integrated pest management plan for N. californiensis.

Occurrence and biological characteristics of broadnose sevengill sharks (Notorynchus cepedianus) in Pacific Northwest coastal estuaries

The broadnose sevengill shark (Notorynchus cepedianus) is a high-order marine predator distributed worldwide in shallow coastal waters of temperate seas. Recent reports have suggested it may be a prevalent component of Pacific Northwest coastal estuarine communities, although biological characteristics of the shark population remain undocumented despite growing interest in recreational harvest of the species. Longline sampling was conducted in Willapa Bay and Grays Harbor, Washington, USA seasonally during 2003–2006 to collect sevengill shark size, maturity, and sex ratio data, and establish some baseline catch rate information. Sevengill sharks were collected on 65% of longline sets and catches were composed of subadult and mature individuals (122–283 cm TL) of both sexes. Most male sevengill sharks were large sexually mature adults, based on external clasper calcification levels, whereas most comparably sized females were considered subadults, based on literature-based size-at–maturity estimates. Neonates and young sharks <120 cm were not collected, nor have they been reported in other historic estuary sampling efforts. Sex ratios were skewed toward males in Willapa Bay and suggest some degree of sexual segregation for the species, as has been shown for populations elsewhere. We suggest sevengill sharks are a largely ignored but potentially important predator in Pacific Northwest estuaries. This study therefore provides some of the first, basic information for guiding management decisions associated with a late-maturing, slow-growing shark species in these coastal habitats.

Ecological periodic tables for nekton usage of four US Pacific Northwest estuarine habitats

We compared the species composition and abundance of the total nekton community, using the Bray–Curtis similarity coefficient, and mean total nekton, fish and crab species richness, abundance and biomass, and shrimp abundance across four intertidal habitats in a US Pacific Northwest estuary: (i) eelgrass ( Zostera marina ); (ii) burrowing mud shrimp ( Upogebia pugettensis ); (iii) burrowing ghost shrimp ( Neotrypaea californiensis ); and (iv) unvegetated sand. Field sampling was conducted during daytime high tides, and was quantitative, stratified-by-habitat, randomized, and estuary-wide. More than 10 000 nekton specimens belonging to 64 taxa were collected in 454 samples during 10 sampling periods, each approximately one-month-long (from June to November), over 3 years (1998–2000). Non-metric multidimensional scaling analyses revealed annually recurring across-habitat patterns in total nekton Bray–Curtis similarity. Two-way (habitat, year) analyses of variance revealed annually recurring across-habitat patterns on 10 indicators of nekton-habitat quality and preference. Total nekton species richness, abundance, and biomass were, respectively, on average, 8 ×, 25 ×, and 25× greater in eelgrass, 4 ×, 6 ×, and 5× greater in mud shrimp, and 2 ×, 3 ×, and 2× greater in ghost shrimp, than in sand habitat. Our findings validate the ecological relevance of our habitats to nekton, and suggest they can serve as elements in ecological periodic tables of nekton habitat usage.

Climatic and Tidal Forcing of Hydrography and Chlorophyll Concentrations in the Columbia River Estuary

Hydrographic patterns and chlorophyll concentrations in the Columbia River estuary were compared for spring and summer periods during 2004 through 2006. Riverine and oceanic sources of chlorophyll were evaluated at stations along a 27-km along-estuary transect in relation to time series of wind stress, river flow, and tidal stage. Patterns of chlorophyll concentration varied between seasons and years. In spring, the chlorophyll distribution was dominated by high concentrations from freshwater sources. Periods of increased stream flow limited riverine chlorophyll production. In summer, conversely, upwelling winds induced input of high-salinity water from the ocean to the estuary, and this water was often associated with relatively high chlorophyll concentrations. The frequency, duration, and intensity of upwelling events varied both seasonally and interannually, and this variation affected the timing and magnitude of coastally derived material imported to the estuary. The main source of chlorophyll thus varied from riverine in spring to coastal in summer. In both spring and summer seasons and among years, modulation of the spring/neap tidal cycle determined stratification, patterns of mixing, and the fate of (especially freshwater) phytoplankton. Spring tides had higher mixing and neap tides greater stratification, which affected the vertical distribution of chlorophyll. The Columbia River differs from the more tidally dominated coastal estuaries in the Pacific Northwest by its large riverine phytoplankton production and transfer of this biogenic material to the estuary and coastal ocean. However, all Pacific Northwest coastal estuaries investigated to date have exhibited advection of coastally derived chlorophyll during the upwelling season. This constitutes a fundamental difference between Pacific Northwest estuaries and systems not bounded by a coastal upwelling zone.

Congener comparison of native (Zostera marina) and introduced (Z. japonica) eelgrass at multiple scales within a Pacific Northwest estuary

A congener comparison of native (Zostera marina) and introduced (Zostera japonica) eelgrasses was conducted in Willapa Bay, Washington, USA. Along intertidal transects, Z. japonica (0.1–1.5 m above mean lower low water [MLLW]) occurred above Z. marina ( 3,800 vs. <360 m−2 in Z. marina). Z. japonica exhibited greater seasonal variation in biomass, with increases supported by both sustained asexual reproduction (rhizome branching) and recruitment from seeds (30 vs. <5% in Z. marina). Z. japonica’s successful invasion appears related to small size and high reproductive output, allowing it to spread quickly in a variable and stressful intertidal environment where competitive effects are low. Based on interannual changes in abundance, the native eelgrass has also recently increased in Willapa Bay, and one hypothesis involves “engineering” of suitable habitat at higher tidal elevations by Z. japonica.

Oysters and Aquaculture Practices Affect Eelgrass Density and Productivity in a Pacific Northwest Estuary

The presence of bivalves and bivalve aquaculture can have positive and negative impacts on seagrass and associated benthic communities. Some oyster (Crassostrea gigas) aquaculture methods recently have been restricted to reduce benthic disturbance and protect native eelgrass (Zostera marina) in West coast (USA) estuaries. We argue that aquaculture, like all food production systems, involves tradeoffs with natural systems, but that the magnitude of those tradeoffs depends on the ecological details of the production system. Capitalizing on oyster aquaculture farms as large scale ''manipulations'' in Willapa Bay, WA (USA), we explored three different oyster aquaculture methods (mechanical harvest or ''dredged'' on-bottom, hand picked on-bottom and long line off-bottom). We found that both the biological (oyster-eelgrass interactions) and physical (disturbance or structure) components of aquaculture led to changes in the eelgrass population. Eelgrass density declined with oyster density in all aquaculture areas, likely as a result of direct competition for space. Eelgrass relative growth rate, plant size, and production did not change with oyster density. However, all eelgrass measures were affected by aquaculture, and the type and magnitude of impacts varied among eelgrass measures and aquaculture methods. Throughout the bay, eelgrass in long line areas occurred at densities indistinguishable from nearby uncultivated areas, but in 2004, eelgrass in long line areas was smaller (32%) and had lower production per area (70%). Cultivating oysters in dredged or hand picked beds increased eelgrass growth rates slightly, but led to lower eelgrass density (70% and 30%, respectively), plant size (32%, both cases), and production (70%, both cases). In a large scale simulated mechanical harvest experiment, the temporal response of eelgrass density varied dramatically by site, ranging from 1 to >4 y. If eelgrass impact reduction, rather than avoidance, is identified as the management goal, the degree of tradeoff between eelgrass habitat and oyster production can be minimized by managing aquaculture methods or oyster planting densities, depending on the eelgrass measure of interest. Explicit management goals and appropriate eelgrass habitat indicators must be developed before our findings can be used to suggest best management practices for intertidal aquaculture in the Pacific Northwest.

Concurrent Assessment of Eelgrass Beds (Zostera marina) and Salt Marsh Communities along the Estuarine Gradient of the South Slough, Oregon

Abstract Salt marshes, eelgrass beds (Zostera marina), and benthic macroalgae frequently occur in close proximity along the steep tidal channels of Pacific Northwest estuaries, where they constitute distinct patches of transitional land-margin habitat. The eelgrass beds and adjacent salt marshes within the South Slough National Estuarine Research Reserve, Oregon, provide an opportunity to investigate commonalities and differences between two ecological-indicator communities that are often separated by only a few meters. The principal objectives of this study are to establish a series of adjacent eelgrass and salt marsh assessment and monitoring sites within different hydrographic regions of the South Slough estuary and to characterize initial temporal and spatial changes in the composition of the plant communities in accordance with new field protocols developed by the National Estuarine Research Reserve System (NERRS) and by SeagrassNet. Eelgrass beds and emergent salt marsh communities were sampled at t...

Light Requirements for Growth and Survival of Eelgrass (Zostera marina L.) in Pacific Northwest (USA) Estuaries

We developed light requirements for eelgrass in the Pacific Northwest, USA, to evaluate the effects of short- and long-term reductions in irradiance reaching eelgrass, especially related to turbidity and overwater structures. Photosynthesis-irradiance experiments and depth distribution field studies indicated that eelgrass productivity was maximum at a photosynthetic photon flux density (PPFD) of about 350–550 μmol quanta m−2 s−1. Winter plants had approximately threefold greater net apparent primary productivity rate at the same irradiance as summer plants. Growth studies using artificial shading as well as field monitoring of light and eelgrass growth indicated that long-term survival required at least 3 mol quanta m−2 day−1 on average during spring and summer (i.e., May-September), and that growth was saturated above about 7 mol quanta m−2 day−1. We conclude that non-light-limited growth of eelgrass in the Pacific Northwest requires an average of at least 7 mol quanta m−2 day−1 during spring and summer and that long-term survival requires a minimum average of 3 mol quanta m−2 day−1.

Monitoring the expanding distribution of nonindigenous dwarf eelgrass zostera japonica in a pacific northwest USA estuary using high resolution digital aerial orthophotography

The paper describes a method of mapping the intertidal distribution of the nonindigenous seagrass Zostera japonica in a Pacific Northwest (PNW) USA estuary from color infrared aerial orthophotography using a hybrid digital classification technique. A random ground survey indicated an overall accuracy exceeding 80 percent for this procedure in the lower estuary, where this invasive species may interfere with mudflat foraging of the commercially important Dungeness crab. Knowledge of the areal distribution of Z. japonica from this digital classification will aid in planning studies to evaluate impacts of expansion of the nonindigenous seagrass in PNW estuaries.

Population Structure and Energetics of the Bopyrid Isopod Parasite Orthione griffenis in Mud Shrimp Upogebia pugettensis

Abstract The population structure and energetic burden of bopyrid isopod parasite Orthione griffenis on the eastern Pacific mud shrimp Upogebia pugettensis are estimated from size and weight relationships between parasite and host. U. pugettensis weight loss increases with O. griffenis weight but the high variance in the relation indicates that direct weight comparisons are insufficient to reveal most of the host-parasite energetic interactions. Environment, reproductive development, age, molt stage and the feeding histories of the hosts and parasites, not apparent from weight ratio comparisons, are likely to be important factors in their interaction. The high prevalence of O. griffenis among U. pugettensis and positive correlation between host weight loss and parasite weight nevertheless, indicate large impacts of these parasites on mud shrimp populations are occurring with corresponding effects on estuarine dynamics in Pacific Northwest estuaries.

Do sturgeon limit burrowing shrimp populations in Pacific Northwest Estuaries?

Green sturgeon, Acipenser medirostris, and white sturgeon, Acipenser transmontanus, are frequent inhabitants of coastal estuaries from northern California, USA to British Columbia, Canada. An analysis of stomach contents from 95 green sturgeon and six white sturgeon commercially landed in Willapa Bay, Grays Harbor, and the Columbia River estuary during 2000–2005 revealed that 17–97% had empty stomachs, but those fish with items in their guts fed predominantly on benthic prey items and fish. Burrowing thalassinid shrimp (mostly Neotrypaea californiensis) were important food items for both white and especially for green sturgeon taken in Willapa Bay, Washington during summer 2003, where they represented 51% of the biomass ingested (84.9% IRI). Small pits observed in intertidal areas dominated by these shrimp, are likely made by these sturgeon and we present evidence from exclusion studies and field observation that the predator making the pits can have a significant cumulative negative effect on burrowing shrimp density. These burrowing shrimp present a threat to the aquaculture industry in Washington State due to their ability to de-stabilize the substrate on which shellfish are grown. Despite an active burrowing shrimp control program in these estuaries, it seems unlikely that current burrowing shrimp abundance and availability as food is a limiting factor for threatened green sturgeon stocks. However, these large predators may have performed an important top down control function on shrimp populations in the past when they were more abundant.

The potential for mitten crab Eriocheir sinensis H. Milne Edwards, 1853 (Crustacea: Brachyura) invasion of Pacific Northwest and Alaskan Estuaries

Eriocheir sinensis H. Milne Edwards, 1853 is on the list of top 100 invaders compiled by the International Union for Conservation of Nature and Natural Resources. The recent establishment of a large Chinese mitten crab population in San Francisco Bay and the potential for introductions from California, Asia and Europe pose a significant invasion potential for estuaries and rivers from California to Alaska. This alien species would place at risk the catchment areas of the Pacific Northwest including the economic and social activities that depend upon intact aquatic systems. An analysis of ecological conditions that define the mitten crab’s native and introduced range suggests that large stable estuaries with long flushing times are necessary to sustain significant populations. Most Pacific Northwest estuaries have limited salinity intrusion, estuarine habitat and short flushing times and face a reduced risk of population establishment. Large, stable estuaries, such as the Puget Sound, may support significant populations. River-dominated estuaries, such as the Columbia River, have flushing times less than the duration of larval development and wouldn’t support populations. An application of a temperature based larval development rate to near-shore and estuary sea surface temperatures suggests that estuaries in Oregon and Washington have sufficient thermal regimes to support larval development. Most estuary systems in Alaska have limited periods where water temperatures are above the mortality threshold for the larval stages and are at a low risk for the establishment of populations. A potential sea temperature rise of two degrees Celsius would permit larval development in Alaskan estuaries, where sufficient estuarine and freshwater habitats exist.

Large woody debris influences vegetation zonation in an oligohaline tidal marsh

The amount of large woody debris (LWD) in Pacific Northwest estuaries has declined dramatically since Euro-American settlement in the mid 19th century. Little is known about the ecological significance of estuarine LWD. This ignorance impairs protection and restoration of habitat critical to threatened Chinook salmon (Oncorhynchus tshawytscha), as well as other fish and wildlife. This study investigates whether LWD affects the distribution of estuarine shrubs, particularly nitrogen-fixingMyrica gale L. (sweetgale), which dominates the tidal shrub community of the Skagit River estuary, Washington, U.S.A. LWD,M. gale, and other shrubs were surveyed along line transects in an oligohaline tidal marsh and in abandoned agricultural land whose dikes failed more than 50 years ago and which has reverted to marsh. The results demonstrate a strong association between LWD andM. gale. M. gale was very rare on LWD<30 cm in diameter, increasingly more common for LWD between 30 and 75 cm, and always present on LWD≥75 cm. The marsh surface was generally 45 cm below mean higher high water (MHHW), suggesting LWD benefitsM. gale by providing a growth platform at an elevation near MHHW and reducing flooding stress. The largest and most abundant tree in the marsh,Picea sitchensis, averaged only 35.8 cm in diameter, which suggests LWD recruitment from upstream sources is necessary to sustainM. gale populations in the geomorphologically dynamic Skagit marsh. By affecting the distribution and abundance ofM. gale in the estuary, LWD may indirectly affect nitrogen dynamics in the marsh and secondary production of detritivores and herbivores.

Persistent organic pollutants in outmigrant juvenile chinook salmon from the Lower Columbia Estuary, USA

Although chemical contaminants are recognized as a potential factor contributing to the salmon declines in the Pacific Northwest, United States, information on contaminant concentrations in threatened and endangered salmon from the Columbia Estuary is limited. In this study we monitored exposure to several persistent organic pollutants [polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), dichlorodiphenyltrichloroethanes (DDTs) and other organochlorine pesticides] in outmigrant juvenile fall chinook salmon (Oncorhynchus tschawytscha) in the Lower Columbia River, and evaluated the potential for adverse effects on salmon and the estuarine food web. Contaminants were measured in whole bodies and stomach contents of subyearling to yearling chinook collected in 2001 and 2002 from sites near the confluence of the Columbia and Willamette Rivers, Longview, and within the lower Estuary. The contaminants detected at highest concentrations in salmon whole bodies were PCBs and DDTs. Average concentrations of PCBs in salmon from the sampling sites ranged from 1300 to 14,000 ng/g lipid, in some cases exceeding the recently estimated threshold for adverse health effects in juvenile salmonids of 2400 ng/g lipid. Average DDT concentrations ranged from 1800 to 27,000 ng/g lipid. These levels are among the highest measured in juvenile salmon from Pacific Northwest estuaries to date. Concentrations of PCBs and DDTs in salmon whole bodies showed no clear spatial gradient from the Willamette/Columbia Confluence to the mouth of the Columbia, but tended to be higher in larger fish and older fish, suggesting a correlation with estuarine residence time. PCBs, DDTs, and PAHs were all found in salmon stomach contents, indicating that prey is a source of exposure. Hatchery feed may have contributed to contaminant body burdens in those fish that were of hatchery origin. Contaminant body burdens in salmon were poorly correlated with contaminant concentrations previously measured in local bed sediments, suggesting that pelagic as well as benthic sources are important in determining salmon exposure.

Scales of variation in otolith elemental chemistry of juvenile staghorn sculpin (Leptocottus armatus) in three Pacific Northwest estuaries

Although distinct otolith elemental signatures are often observed in fish collected from different estuaries, significant differences are also observed among sites within estuaries. Variation at these smaller spatial scales is not well quantified and has the potential to lead to inappropriate interpretations of otolith elemental data. To quantify variation at multiple scales, the otolith elemental composition (Mg:Ca, Mn:Ca, Sr:Ca, Ba:Ca, and Pb:Ca) of juvenile staghorn sculpin (Leptocottus armatus Girard, 1854) collected from five sites within three estuaries, the Columbia River (two sites) and Coos Bay (one site), Oregon, and Humboldt Bay, California (two sites), was examined. Using laser ablation-inductively coupled plasma mass spectrometry, each otolith was sampled at three zones: (1) within the primordium, which represents the egg and early larval periods; (2) at the outer edge, which represents the juvenile period just prior to collection; and (3) midway between the primordial and edge samples, which represents the late larval and early juvenile period. There were significant differences in otolith metal-to-calcium ratios at all scales examined. Using multi-element otolith signatures, fish were classified to estuary and site within estuary with relatively high levels of accuracy (av = 70–90%). The largest differences in metal-to-calcium ratios were observed between sites within estuaries (<5 km apart) and the smallest differences were observed among otolith zones. Variation in otolith chemistry may be used to provide information on probable habitat use by estuarine fish but studies must be carefully designed.

Contaminant exposure in outmigrant juvenile salmon from Pacific Northwest estuaries of the United States

To better understand the dynamics of contaminant uptake in outmigrant juvenile salmon in the Pacific Northwest, concentrations of polychlorinated biphenyls (PCBs), DDTs, polycylic aromatic hydrocarbons (PAHs) and organochlorine pesticides were measured in tissues and prey of juvenile chinook and coho salmon from several estuaries and hatcheries in the US Pacific Northwest. PCBs, DDTs, and PAHs were found in tissues (whole bodies or bile) and stomach contents of chinook and coho salmon sampled from all estuaries, as well as in chinook salmon from hatcheries. Organochlorine pesticides were detected less frequently. Of the two species sampled, chinook salmon had the highest whole body contaminant concentrations, typically 2--5 times higher than coho salmon from the same sites. In comparison to estuarine chinook salmon, body burdens of PCBs and DDTs in hatchery chinook were relatively high, in part because of the high lipid content of the hatchery fish. Concentrations of PCBs were highest in chinook salmon from the Duwamish Estuary, the Columbia River and Yaquina Bay, exceeding the NOAA Fisheries' estimated threshold for adverse health effects of 2400 ng/g lipid. Concentrations of DDTs were especially high in juvenile chinook salmon from the Columbia River and Nisqually Estuary; concentrations of PAH metabolites in bile were highest in chinook salmon from the Duwamish Estuary and Grays Harbor. Juvenile chinook salmon are likely absorbing some contaminants during estuarine residence through their prey, as PCBs, PAHs, and DDTs were consistently present in stomach contents, at concentrations significantly correlated with contaminant body burdens in fish from the same sites.