Π-stacked Structure Research Articles

Stability Enhancement of a π-Stacked Helical Structure Using Substituents of an Amino Acid Side Chain: Helix Formation via a Nucleation-Elongation Mechanism.

Molecular design involving the incorporation of an α-amino acid residue into the side chain or main chain of a polymer is often used to stabilize artificial molecular architectures through intramolecular hydrogen bonding. However, this molecular design strategy rarely considers the importance of interactions between substituents at the α-position of amino acid moieties, as found in nature. Herein, we report the synthesis of a novel series of π-stacked helical poly(quinolylene-2,3-methylene) with amino acid derivatives bearing different substituents at the α-position. We found that the thermal stability of π-stacked helical poly(quinolylene-2,3-methylene) is significantly improved by packing the substituents in the empty spaces between the side chains. In particular, when a bulky cyclohexyl alanine derivative was used as the side chain, the π-stacked helical structure maintained its stability even in dimethylsulfoxide, a hydrogen bond competitor. The stabilization of the π-stacked structure by the amino acid substituents resulted in a unique polymerization behavior involving nucleation-elongation steps. In the case of derivatives with leucine and cyclohexyl alanine, which form stable π-stacked helical structures, metastable structures with entangled main chains were formed in the initial polymerization stage. These structures subsequently underwent an irreversible structural change to achieve a thermodynamically stable helical π-stacked conformation as a nucleus for subsequent polymerization. Thereafter, the polymerization reaction proceeded with the elongation of the π-stacked helical structure. Differences in the stability of these systems indicated that the amino acid substituents on the side chains determine the most thermodynamically stable π-stacked helical structure.

Reversible Redox Processes in Polymer of Unmetalated Salen-Type Ligand: Combined Electrochemical in Situ Studies and Direct Comparison with Corresponding Nickel Metallopolymer.

Most non-metalized Salen-type ligands form passivation thin films on electrode surfaces upon electrochemical oxidation. In contrast, the H2(3-MeOSalen) forms electroactive polymer films similarly to the corresponding nickel complex. There are no details of electrochemistry, doping mechanism and charge transfer pathways in the polymers of pristine Salen-type ligands. We studied a previously uncharacterized electrochemically active polymer of a Salen-type ligand H2(3-MeOSalen) by a combination of cyclic voltammetry, in situ ultraviolet–visible (UV–VIS) spectroelectrochemistry, in situ electrochemical quartz crystal microbalance and Fourier Transform infrared spectroscopy (FTIR) spectroscopy. By directly comparing it with the polymer of a Salen-type nickel complex poly-Ni(3-MeOSalen) we elucidate the effect of the central metal atom on the structure and charge transport properties of the electrochemically doped polymer films. We have shown that the mechanism of charge transfer in the polymeric ligand poly-H2(3-MeOSalen) are markedly different from the corresponding polymeric nickel complex. Due to deviation from planarity of N2O2 sphere for the ligand H2(3-MeOSalen), the main pathway of electron transfer in the polymer film poly-H2(3-MeOSalen) is between π-stacked structures (the π-electronic systems of phenyl rings are packed face-to-face) and C-C bonded phenyl rings. The main way of electron transfer in the polymer film poly-Ni(3-MeOSalen) is along the polymer chain, while redox processes are ligand-based.

Synthesis, Properties, and Packing Structures of Wing-Shaped N-Doped Nanographene in Various Oxidation States.

A rigid wing-shaped bicyclo[2.2.2]octadiene-fused bis-hexapyrrolohexaazacoronene (HPHAC) is synthesized, and subsequent chemical oxidation affords a stable biradical dication and an aromatic tetracation. The physicochemical properties and single-crystal structures in various oxidation states are characterized. The face-to-face π-stacked dimeric structures are observed in the neutral and dicationic states. The HPHAC flakes can act as aromatic walls in a tetracation state, producing enlarged induced magnetic shielding space through the superimposition effect.

Thiophene-Fused 1,4-Diazapentalene: A Stable C=N-Containing π-Conjugated System with Restored Antiaromaticity.

A thiophene-fused 1,4-diazapentalene (TAP) was rationally designed and synthesized as a C=N-containing 4n π-electron system that exhibits restored antiaromaticity impaired by the doping with C=N bonds. X-ray crystallographic analysis and quantum chemical calculations revealed that the annulation of thiophene rings with the 1,4-diazapentalene moiety resulted in a much higher antiaromaticity than the pristine 1,4-diazapentalene. These effects can be ascribed to the reduced bond alternation of the eight-membered-ring periphery caused by stabilization of the less-stable bond-shifted resonance structure upon increasing the degree of substitution of imine moieties. Consequently, TAP underwent facile hydrogenation even under mild conditions because of its pronounced antiaromaticity and the high aromaticity of the corresponding hydrogenated product H2 -TAP. In addition, the electrophilic C=N moieties in TAP led to the formation of a dense π-stacked structure. These results highlight the effect of partial replacement of C=C bonds with C=N bonds in antiaromatic π-electron systems.

Benzo[a]pyrene and heavy metal ion adsorption on nanoplastics regulated by humic acid: Cooperation/competition mechanisms revealed by molecular dynamics simulations

Nanoplastics adsorb pollutants and organic matter to aggravate or alleviate impact to the eco-environment and human health. However, the interaction mechanisms remain unclear and difficult to study using current experimental techniques. By means of molecular dynamics simulation, here we investigate adsorption of benzo[a]pyrene (BaP) and heavy metal ions (Cu2+) on nanoplastics of different materials and surface charges regulated by humic acid (HA). Among considered materials, polystyrene shows the highest capacity of adsorbing BaPs via forming sandwiched π-stacking structures with benzene rings. Driven by hydrophobic, electrostatic and hydrogen bonding interactions, HAs spontaneously aggregate into micelle-like structures with hydrophobic core and charged exterior accessible to BaPs and Cu2+, respectively. Cationic and neutral nanoplastics adsorb more HAs to form eco-coronas, which modulate BaP and Cu2+ adsorption via following cooperation/competition mechanisms. On one hand, the direct binding of BaPs to nanoplastics is hindered by HAs through BaP encapsulation plus competitive adsorption. On the other hand, adsorbed HAs expose carboxyl groups to offer rich binding sites to promote Cu2+ adsorption on neutral and cationic nanoplastics, while unbound HAs compete with anionic nanoplastics to inhibit Cu2+ adsorption. These results provide molecular level insights into transport, transformation and accessibility of nanoplastics with coexisting contaminants in the aqueous environment.

Research Progress of Intramolecular π-Stacked Small Molecules for Device Applications.

Organic semiconductors can be designed and constructed in π-stacked structures instead of the conventional π-conjugated structures. Through-space interaction (TSI) occurs in π-stacked optoelectronic materials. Thus, unlike electronic coupling along the conjugated chain, the functional groups can stack closely to facilitate spatial electron communication. Using π-stacked motifs, chemists and materials scientists can find new ways for constructing materials with aggregation-induced emission (AIE), thermally activated delayed fluorescence (TADF), circularly polarized luminescence (CPL), and room-temperature phosphorescence (RTP), as well as enhanced molecular conductance. Organic optoelectronic devices based on π-stacked molecules have exhibited very promising performance, with some of them exceeding π-conjugated analogues. Recently, reports on various organic π-stacked structures have grown rapidly, prompting this review. Representative molecular scaffolds and newly developed π-stacked systems could stimulate more attention on through-space charge transfer the well-known through-bond charge transfer. Finally, the opportunities and challenges for utilizing and improving particular materials are discussed. The previous achievements and upcoming prospects may provide new insights into the theory, materials, and devices in the field of organic semiconductors.

Π-Stacking in Heterodimers of Propargylbenzene with (Fluoro)phenylacetylenes.

The heterodimers of propargylbenzene (PrBz) with phenylacetylene (PHA) and monosubstituted fluorophenylacetylenes (FPHAs) were investigated using electronic and vibrational spectroscopic methods. The vibrational spectra in the acetylenic C–H stretching region show a marginal shift (0–4 cm–1) upon dimer formation, which suggests minimal perturbation of the acetylenic group. The M06-2X/aug-cc-pVDZ calculations indicate that the π-stacked structures are the most stable, followed by other structures. In general, structures incorporating aromatic C–H···π interactions are much higher in energy. The appearance of the spectra and the energy considerations clearly indicate the preference for the π-stacked structures. Furthermore, the observed trend in the stabilization energies for heterodimers with the three FPHAs is inversely proportional to the dipole moments of FPHAs. On the other hand, the absence of any clear trends in the electrostatic component of the interaction energy is attributed to the presence of the methylene group in PrBz.

Boron-Doped Polycyclic π-Electron Systems with an Antiaromatic Borole Substructure That Forms Photoresponsive B-P Lewis Adducts.

Heteroatom doping is a powerful strategy to alter the electronic structure of polycyclic aromatic hydrocarbons (PAHs). Especially boron doping endows PAH scaffolds with electron-accepting character and Lewis acidic centers. Herein, we report that embedding a five-membered borole ring into a polycyclic skeleton imparts the π-system with antiaromatic character and thereby induces unique properties and behavior. A series of borole-embedded π-conjugated compounds were synthesized from teraryl precursors via a borylation/intramolecular electrophilic C-H borylation sequence. The obtained compounds exhibit planar structures with distorted geometries around the boron center and form columnar slipped face-to-face π-stacked structures. Among these compounds, a pyrene-fused derivative shows an intense emission with a high quantum yield in solution. This compound also exhibits high Lewis acidity, which reflects the antiaromatic character and strained structure of the borole substructure. This compound forms a Lewis acid-base adduct even with weakly Lewis basic phosphorus-containing polycyclic π-systems. Analyzing the crystal structure of the thus-obtained adduct revealed a complex between the boron- and phosphorus-embedded π-systems with a direct B-P dative bond. This complex undergoes photodissociation in the excited state and exhibits an emission exclusively from the base-free borole-embedded π-system.

Crystal Structures of β-Methylchalcogenated Tetrathienoacenes: From One-Dimensional π-Stacking to Sandwich Pitched π-Stacking Structure

The control and prediction of crystal structures of molecular semiconductors is critical to optimize such solid-state properties as carrier mobility, although it still presents a challenge owing to the complicated interplay of various intermolecular interactions in the solid state. We recently reported that methylthio and methoxy groups can act as a “controller” of crystal structure from the herringbone to the rubrene-like pitched π-stacking in a series of acenedithiophenes and simple acenes, such as naphthalene and anthracene. In this study, we focused on tetrathienoacene (4TA), which affords a one-dimensional π-stacking structure, and investigated the effect of methylchalcogenation on its crystal structure. The crystal structures of newly synthesized 4TA derivatives were altered significantly; the methoxy and methylthio derivatives crystallized into a “sandwiched pitched π-stacking” structure, whereas the methylseleno 4TA crystallized into a “pseudo π-stacking” structure. These structural changes were explained by the analysis of intermolecular interactions estimated by the symmetry-adapted perturbation theory method. The interplay between the CH-π interactions induced by the methylchalcogenation and the inherent nature of the π-π interactions of the 4TA cores determined the crystal structures of the 4TA derivatives. We conclude that the mutual effects of the parent π-conjugated system and the methylchalcogeno groups are important to define the packing structure.

Synthesis of a series of optically active polythiophene derivatives bearing myrtanoxy group

ABSTRACT Polythiophenes bearing myrtanoxy group as a chiral side chain were synthesized via a Migita–Kosugi–Stille coupling reaction. Circular dichroism spectroscopy of the polymers showed that only the polythiophene derivative consisting of thiophene trimers as a monomer repeat unit had optical activity. The number of thiophene rings in the thiophene unit increased, the absorption bands shifted to longer absorption wavelengths. The polymer shows Davydov split type circular dichroism optical absorption due to formation of helical π-stacking structure in 1,2-dichlorobenzene solution. This polymer behaved as a thermotropic liquid crystallinity due to its structural characteristics. Introduction of a derivative of natural compound to polythiophenes affords to yield chiroptically active π-conjugated materials with visible color fluorescence.

Long-Range Order in Supramolecular π Assemblies in Discrete Multidecker Naphthalenediimides.

We report herein the solution and solid-state studies of conformationally flexible multidecker naphthalenediimides (NDIs) in which the chromophoric NDI units intramolecularly assemble into a series of discrete π-stacks. The X-ray crystallography reveals the existence of exclusively all-syn NDIs orientations in lower congeners while all-anti in a higher congener, suggesting short- to long-range π···π interactions throughout the slipped πNDI chromophoric array. The UV/vis and fluorescence spectra evaluate the discrete π-stacks by remarkable optical changes upon cooling in solution. Furthermore, we carried out a systematic electrochemical investigation to gain an insight into redox properties of the long-range π-stacked structures. The higher congener (5NDI) shows a ten-electron reversible reduction process in a small working potential window (∼0.8 V). To our knowledge, this is an unusual observation in an organic molecular system to undergo up to ten-electron reduction. These results pave the way to design multidecker π-stacks in which structural control with specific electronic properties would be engineered.

Switching Hydrogen Bonding to π-Stacking: The Thiophenol Dimer and Trimer.

We used jet-cooled broadband rotational spectroscopy to explore the balance between π-stacking and hydrogen-bonding interactions in the self-aggregation of thiophenol. Two different isomers were detected for the thiophenol dimer, revealing dispersion-controlled π-stacked structures anchored by a long S–H···S sulfur hydrogen bond. The weak intermolecular forces allow for noticeable internal dynamics in the dimers, as tunneling splittings are observed for the global minimum. The large-amplitude motion is ascribed to a concerted inversion motion between the two rings, exchanging the roles of the proton donor and acceptor in the thiol groups. The determined torsional barrier of B2 = 250.3 cm–1 is consistent with theoretical predictions (290–502 cm–1) and the monomer barrier of 277.1(3) cm–1. For the thiophenol trimer, a symmetric top structure was assigned in the spectrum. The results highlight the relevance of substituent effects to modulate π-stacking geometries and the role of the sulfur-centered hydrogen bonds.

Amplified spontaneous emission from oligo(p-phenylenevinylene) derivatives

A series of oligo(p-phenylenevinylene) derivatives were fully characterized. Compounds with herringbone packing exhibited amplified spontaneous emission (ASE) thresholds as low as 7.2 μJ cm−2, while those with π-stacked structures did not show ASE.

Dipole Moment Propels π-Stacking of Heterodimers of Fluorophenylacetylenes.

Electronic and vibrational spectroscopic investigations in combination with quantum chemical calculations were carried out to probe the formation of four sets of heterodimers of phenylacetylene with 2-fluorohenylacetylene, 3-fluorophenylacetylene, 4-fluorophenylacetylene, and 2,6-difluorophenylacetylene. The interaction of phenylacetylene with fluorophenylacetylenes leads to marginal (2-9 cm-1) red-shifts in the acetylenic C-H stretching frequencies of fluorophenylacetylenes, which suggests that constituent monomers are minimally perturbed in the heterodimer. On the other hand, the density-functional-theory-based calculations indicate that π-stacked structures outweigh other structures incorporating C-H···π and C-H···F interactions by about 8 kJ mol-1 or more. The IR spectra in the acetylenic C-H stretching region were interpreted based on the perturbed dipole model, which suggests formation of predominantly antiparallel π-stacked structures, propelled by dipole moment. However, the energy decomposition analysis suggests that among stabilizing components dispersion dominates, while electrostatics plays a pivotal role in the formation of the π-stacked structures. Interestingly, the ability of 2-fluorophenylacetylene and 2,6-difluorophenylacetylene to π-stack differs significantly, even though both of them have almost identical dipole moments and the dipole moment propels the formation of π-stack structures. These results suggest π-stacking transcends the classical electrostatic description in terms of dipole moment.

15N NMR Shifts of Eumelanin Building Blocks in Water: A Combined Quantum Mechanics/Statistical Mechanics Approach.

Theoretical results for the magnetic shielding of protonated and unprotonated nitrogens of eumelanin building blocks including monomers, dimers, and tetramers in gas phase and water are presented. The magnetic property in water was determined by carrying out Monte Carlo statistical mechanics sampling combined with quantum mechanics calculations based on the gauge-including atomic orbitals approach. The results show that the environment polarization can have a marked effect on nitrogen magnetic shieldings, especially for the unprotonated nitrogens. Large contrasts of the oligomerization effect on magnetic shielding show a clear distinction between eumelanin building blocks in solution, which could be detected in nuclear magnetic resonance experiments. Calculations for a -stacked structure defined by the dimer of a tetrameric building block indicate that unprotonated N atoms are significantly deshielded upon stacking, whereas protonated N atoms are slightly shielded. The results stress the interest of NMR experiments for a better understanding of the eumelanin complex structure.

Magnetic Multistability in an Anion-Radical Pimer.

Radical pimers are the simplest and most important models for studying charge-transfer processes and provide deep insight into π-stacked organic materials. Notably, radical pimer systems with magnetic bi- or multistability may have important applications in switchable materials, thermal sensors, and information-storage media. However, no such systems have been reported. Herein, we describe a new pimer consisting of neutral N-(n-propyl) benzene triimide ([BTI-3C]) and its anionic radical ([BTI-3C]-. ) that exhibits rare magnetic multistability. The crystalline pimer was readily synthesized by reduction of BTI-3C with cobaltocene (CoCp2 ). The transition occurred with a thermal hysteresis loop that was 27 K wide in the range of 170-220 K, accompanied by a smaller loop with a width of 25 K at 220-242 K. The magnetic multistability was attributed to slippage of the π-stacked BTI structures and entropy-driven conformational isomerization of the side propyl chains in the crystalline state during temperature variation.

Construction of Helically Stacked π-Electron Systems in Poly(quinolylene-2,3-methylene) Stabilized by Intramolecular Hydrogen Bonds.

π-Stacked polymers, which consist of layered π-electron systems in a polymer, can be expected to be used in molecular electronic devices. However, the construction of a stable π-stacked structure in a polymer is considerably challenging because it requires sophisticated designs and precise synthetic methods. Herein, we present a novel π-stacked architecture based on poly(quinolylene-2,3-methylene) bearing alanine derivatives as the side chain, obtained through the living cyclo-copolymerization of an o-allenylaryl isocyanide. In the resulting polymer, the neighboring quinoline rings of the main chain form a layered structure with π-π interactions, which is stabilized by intramolecular hydrogen bonds. The vicinal quinoline units form two independent helices and the whole molecule is a twisted-tape structure. This structure is established on the basis of UV/CD spectra, theoretical calculations, and atomic-force microscopy.

Structural Modulation of Electrically Conducting TCNQ Salts Using Na+(crown ether) Supramolecular Cations

The single crystals of Na+([12]crown-4)2(TCNQ)2 (1), Na+([15]crown-5)(TCNQ)2 (2), Na+([18]crown-6)(TCNQ)2.5 (3), and Na+([24]crown-8)(TCNQ)2 (4) (TCNQ = 7,7,8,8-tetracyano-p-quinodimethane) were prepared and defined by single-crystal X-ray structural analyses. Of these, salts 1 and 2 showed structural phase transitions at 320 and 185 K, respectively, upon heating. According to differential scanning calorimetry, temperature (T)-dependent crystal structures, and dielectric measurements, the motional freedom and orientation change of the spherical sandwich-type Na+([12]crown-4)2 supramolecular cation activated the phase transition. Furthermore, a symmetry change in salt 2 from the low-T Pc to the high-T P21/c was observed and a symmetry change in the Na+···NC– coordination environment is the origin of the structural phase transition at 185.4 K. Conversely, no distinct structural phase transitions were observed for salts 3 and 4. In all of the crystals, the π dimer of the partially reduced TCNQ formed a segregated π-stacking structure that interacted further by interdimer interactions to form electrically conducting TCNQ layers. Nonuniform and one-dimensional (1D) π-stacking columns of TCNQ were observed in salts 1, 3, and 4, while two-dimensional (2D) spanning-overlap interdimer interactions were confirmed in salt 2. The electrical resistivity and activation energy of 2D salt 2 were 10–10000 and 2 times lower, respectively, than those of the 1D electronic systems of salts 1, 3, and 4.

Synthesis of Trioxotriangulene Stable Neutral π-Radicals Having Alkyl Substituent Groups, and Their Effects on Electronic-spin and π-Stacking Structures

Two 4,8,12-trioxotriangulene neutral radical derivatives having isopropyl and n-butyl groups were newly synthesized using different methods, and their electronic-spin structures were elucidated. In...

Progressive Hydrophobicity of Fluorobenzenes.

The potentials of mean force for the dimers of fluorobenzenes sample both π-stacked and T-shaped structures for partially fluorinated benzenes, namely, 1,4-difluorobenzene, 1,3,5-trifluorobenzene, and 1,2,4,5-tetrafluorobenzene, and sample only the T-shaped structures for benzene and hexafluorobenzene. While the free energy for the dimerization in water is very weakly dependent on the number of fluorine atoms, the formation of π-stacked structures is entropy-driven and the T-shaped structures appear due to an enthalpic minimum. Interestingly, the solvation behavior suggests that the accumulation of water around the contact and solvent-separated pairs decreases with the increase in the number of fluorine atoms, which signifies progressive hydrophobicity of fluorobenzenes.