Oyster Reefs Research Articles

Modeling surface wave dynamics in upper Delaware Bay with living shorelines

Living shorelines gain increasing attention because they stabilize shorelines and reduce erosion. This study leverages physics-based models and bagged regression tree (BRT) machine learning algorithm to simulate wave dynamics at a living shoreline composed of constructed oyster reefs (CORs) in upper Delaware Bay. The physics-based models consist of coupled Delft3D-FLOW and SWAN in four-level nested domains. The model accuracy converges with increasing mesh resolution. The simulated wave-induced current circulation substantiates the effectiveness of CORs in trapping sediments. The simulated yearly-averaged wave power correlates qualitatively with historical shoreline retreat rates. BRT is adopted to improve the model accuracy, identify key processes responsible for simulation errors in wave height (Hs) and wave period (Tp), and quantify their importance. In the CORs sheltered area, BRT reveals that simulation errors of wind seas mainly arise from wind forcing, wave breaking and wave triad interactions. Wave breaking is seven times more important than wind forcing for simulating Hs, while wind forcing and triad interactions are of equal importance for simulating Tp. Simulation errors of swells mostly stem from bottom friction and offshore wave boundary conditions. Results from this study can help the assessment and adaptive management of CORs-based living shoreline restoration projects under climate change.

Evidence of ontogenetic partitioning of restored coastal habitat by a generalist sportfish

Coastal and estuarine habitats that provide crucial nursery areas for many economically and ecologically important fish species are in decline. Restoration of benthic habitats can improve fish populations, biomass, and feeding opportunities, but there is limited research on how restoration impacts growth and survival with ontogeny. To address this knowledge gap, here we examine the biometrics (size, biomass, and body condition), recruitment, size structure, and trophic shifts of a sportfish (mangrove snapper, Lutjanus griseus) at restored oyster reefs and stabilized living shorelines to better understand how fish use restored habitats as they grow. Biomass and body condition of L. griseus juveniles and subadults, and post‐settlement recruitment, at restored/stabilized sites was similar, and in some cases greater than natural sites, correlating with benthic habitat, reef location, and lunar phase at oyster reefs. Living shorelines exhibited greater recruitment potential, while oyster reefs supported more juveniles and subadults, as evidenced by differences in fish size and biomass between habitats. Dietary overlap implies subadult L. griseus likely foraged across habitats more than juveniles, while there was greater diet similarity within habitats. Furthermore, ontogenetic shifts also occurred within oyster reef habitats, highlighting the importance of quality habitat to support various sportfish life stages, which can be achieved through restoration. These findings suggest life history attributes can be indicators of habitat restoration success, and specifically provide actionable science to guide the development of more effective strategies for restoring inshore nursery habitats and thus augment production of offshore reef fisheries.

Nature-based and bioinspired solutions for coastal protection: an overview among key ecosystems and a promising pathway for new functional and sustainable designs

Abstract Coastal erosion is occurring at a faster rate than in the past. The adverse impacts are not negligible at environmental, economic, and socio-cultural levels. Hence, coastal protection is currently seen as an emerging need to counteract erosion impacts and their many negative effects on worldwide ecosystems. In this regard, natural systems and their organisms represent a complex system of solutions that can efficiently create and/or inspire the development of natural, sustainable, and cutting-edge coastal barriers. Coastal ecosystems, such as coral reefs, oyster reefs, mangroves, saltmarshes, seagrasses, and polychaete reefs, act as a natural barrier for destructive waves and wind forces. Moreover, living organisms have evolved unique strategies to withstand their environmental hydrodynamic loadings. This review intends to provide an overview regarding natural systems and related nature-based and bioinspired strategies in the specific field of coastal protection, describing the state of the art, methods, processes, and tools, as well as delineating a promising pathway for new functional and sustainable designs.

What evidence exists on the performance of nature-based solutions interventions for coastal protection in biogenic, shallow ecosystems? A systematic map protocol

BackgroundAnthropogenic pressures and climate change threaten the capacity of ecosystems to deliver a variety of services, including protecting coastal communities from hazards like flooding and erosion. Human interventions aim to buffer against or overcome these threats by providing physical protection for existing coastal infrastructure and communities, along with added ecological, social, or economic co-benefits. These interventions are a type of nature-based solution (NBS), broadly defined as actions working with nature to address societal challenges while also providing benefits for human well-being, biodiversity, and resilience. Despite the increasing popularity of NBS for coastal protection, sometimes in lieu of traditional hardened shorelines (e.g., oyster reefs instead of bulkheads), gaps remain in our understanding of whether common NBS interventions for coastal protection perform as intended. To help fill these knowledge gaps, we aim to identify, collate, and map the evidence base surrounding the performance of active NBS interventions related to coastal protection across a suite of ecological, physical, social, and economic outcomes in salt marsh, seagrass, kelp, mangrove, shellfish reef, and coral reef systems. The resulting evidence base will highlight the current knowledge on NBS performance and inform future uses of NBS meant for coastal protection.MethodsSearches for primary literature on performance of NBS for coastal protection in shallow, biogenic ecosystems will be conducted using a predefined list of indexing platforms, bibliographic databases, open discovery citation indexes, and organizational databases and websites, as well as an online search engine and novel literature discovery tool. All searches will be conducted in English and will be restricted to literature published from 1980 to present. Resulting literature will be screened against set inclusion criteria (i.e., population, intervention, outcome, study type) at the level of title and abstract followed by full text. Screening will be facilitated by a web-based active learning tool that incorporates user feedback via machine learning to prioritize articles for review. Metadata will be extracted from articles that meet inclusion criteria and summarized in a narrative report detailing the distribution and abundance of evidence surrounding NBS performance, including evidence clusters, evidence gaps, and the precision and sensitivity of the search strategy.

Optimising sampling of fish assemblages on intertidal reefs using remote underwater video.

Assessing fish assemblages in subtidal and intertidal habitats is challenging due to the structural complexity of many of these systems. Trapping and collecting are regarded as optimal ways to sample these assemblages, but this method is costly and destructive, so researchers also use video techniques. Underwater visual census and baited remote underwater video stations are commonly used to characterise fish communities in these systems. More passive techniques such as remote underwater video (RUV) may be more appropriate for behavioural studies, or for comparing proximal habitats where the broad attraction caused by bait plumes could be an issue. However, data processing for RUVs can be time consuming and create processing bottlenecks. Here, we identified the optimal subsampling method to assess fish assemblages on intertidal oyster reefs using RUV footage and bootstrapping techniques. We quantified how video subsampling effort and method (systematic vs random) affect the accuracy and precision of three different fish assemblage metrics; species richness and two proxies for the total abundance of fish, MaxNT and MeanCountT, which have not been evaluated previously for complex intertidal habitats. Results suggest that MaxNT and species richness should be recorded in real time, whereas optimal sampling for MeanCountT is every 60 s. Systematic sampling proved to be more accurate and precise than random sampling. This study provides valuable methodology recommendations which are relevant for the use of RUV to assess fish assemblages in a variety of shallow intertidal habitats.

Hypoxia Interrupts the Secondary Production Service Provided by Oyster Reef Macrofauna in Mississippi Sound, USA

Hypoxia Interrupts the Secondary Production Service Provided by Oyster Reef Macrofauna in Mississippi Sound, USA

The Eocene carbonate platforms of the Ghomaride Domain (Internal Rif Zone, N Morocco): a segment of the westernmost Tethys

The Eocene platform deposits in the Moroccan Ghomarides have been studied. These marine carbonate platforms were located in the westernmost Tethys approximately 30°N and 0°–10°W during the Cuisian to Bartonian. The study includes observations from fossiliferous assemblages (such as larger benthic foraminifera and colonial corals), their palaeoenvironment as well as rock texture and fabric. Eight microfacies were identified that represent different ramp environments in a ‘distally-steepened carbonate ramp’ type of platform. The studied deposits are organised into a transgressive succession composed of three sedimentary cycles: lower Cuisian, middle Cuisian and middle Lutetian to Bartonian. In the lower cycle, photic inner to mid ramp environments in mesotrophic conditions were prevalent. In the second cycle, photic inner ramp (sea-grass) to mid ramp environments in mesotrophic to oligotrophic conditions were observed. The upper cycle, which is more extensive and variable, represents mesophotic mid ramp to aphotic slope environments and changes gradually from oligotrophic to eutrophic conditions. During the Eocene, larger benthic foraminifera were dominant overtaking the zooxanthellate corals in the Tethys regions. Nevertheless, our study and the performed comparison with other Tethyan sectors have revealed that in some areas both coexisted in similar proportions. In some western Tethys regions close to the Atlantic Ocean, coinciding with areas influenced by upwelling currents, larger benthic foraminifera and coral build-ups were replaced by oyster reefs. The Ghomaride Domain represents an intermediate case between fossil assemblages of the northern Tethyan margin and eastern sector of the southern margin of the Tethys, with a dominance of larger benthic foraminifera but with a certain presence of corals as well. A good correlation exists between Eocene warm intervals and carbonate platform deposits in these domains. Contrarily, during cooling ones shallowing and gaps in the sedimentation are registered. Two anomalies have been detected in the Ghomaride Domain during Ypresian and Bartonian times indicating particular climatic conditions or local tectonic interferences.

Meta-analysis reveals drivers of restoration success for oysters and reef community.

Restoration aims to reverse global declines of foundation species, but it is unclear how project attributes, the physical setting, and antecedent conditions affect restoration success. In coastal seas worldwide, oyster reef restoration is increasing to counter historic habitat destruction and associated declines in fisheries production and biodiversity. Yet, restoration outcomes are highly variable and the factors that enhance oyster production and nekton abundance and diversity on restored reefs are unresolved. To quantify the drivers of oyster restoration success, we used meta-analysis to synthesize data from 158 restored reefs paired with unstructured habitats along the U.S. Gulf and Atlantic coasts. The average recovery of oyster production was 65% greater in subtidal (vs. intertidal) zones, 173% greater in polyhaline (vs. mesohaline) environments and increased with tidal range, demonstrating that physical conditions can strongly influence the restoration success of foundation species. Additionally, restoration increased the relative abundance and richness of nektonic fishes and invertebrates over time as reefs aged (at least 8 years post-construction). Thus, the restoration benefits for provisioning habitat and enhancing biodiversity accrue over time, highlighting that restoration projects need multiple years to maximize ecosystem functions. Furthermore, long-term monitoring of restored and control sites is needed to assess restoration outcomes and associated drivers. Lastly, our work reveals data constraints for several potential drivers of restoration outcomes, including reef construction material, reef dimensions, harvest pressure and disease prevalence. More experimental and observational studies are needed to target these factors and measure them with consistent methods across studies. Our findings indicate that the assisted recovery of foundation species yields several enhancements to ecosystem services, but such benefits are mediated by time and environmental conditions.

Predator signaling of multiple prey on different trophic levels structures trophic cascades.

The capacity of an apex predator to produce nonconsumptive effects (NCEs) in multiple prey trophic levels can create considerable complexity in nonconsumptive cascading interactions, but these effects are poorly studied. We examined such effects in a model food web where the apex predator (blue crabs) releases chemical cues in urine that affect both the intermediate consumer (mud crabs seek shelter) and the basal prey (oysters are induced to grow stronger shells). Shelter availability and predator presence were manipulated in a laboratory experiment to identify patterns in species interactions. Then, experimentally induced and uninduced oysters were planted across high-quality and low-quality habitats with varying levels of shelter availability and habitat heterogeneity to determine the consistency of these patterns in the field. Oyster shell thickening in response to blue crab chemical cues generally protected oysters from mud crab predation in both the laboratory and in field environments that differed in predation intensity, structural complexity, habitat heterogeneity, and predator composition. However, NCEs on the intermediate predator (greater use of refugia) opposed the NCEs on oyster prey in the interior of oyster reefs while still providing survival advantages to basal prey on reef edges and bare substrates. Thus, the combined effects of changing movement patterns of intermediate predators and morphological defenses of basal prey create complex, but predictable, patterns of NCEs across landscapes and ecotones that vary in structural complexity. Generalist predators that feed on multiple trophic levels are ubiquitous, and their potential effects on NCEs propagating simultaneously to different trophic levels must be quantified to understand the role of NCEs in food webs.

Impact of Hydrodynamic and Suspended Sediment on Liyashan Oyster Reef

Based on the sensitivity of oysters to water environmental factors, a hydrodynamic model in Tongzhou Bay, southwest of China’s Yellow Sea, is set up to analyse the impact of the hydrodynamic and suspended sediment on the Liyashan Oyster Reef. The results show that the hydrodynamic characteristics of the waters near the oyster reef will not be significantly affected by the implementation of the project. The diffusion range of suspended sediment concentration greater than 10mg/L caused by channel dredging will not reach and affect oyster reef area, and the growth of oysters will not be significantly affected by Tongzhou Bay Channel Construction.

Culturing for conservation: the need for timely investments in reef aquaculture

Temperate oyster and tropical coral reefs are analogous systems that create habitat for economically, ecologically, and culturally important species, and they provide countless ecosystem services to human coastal communities. Globally, reefs are imperiled by multiple anthropogenic stressors, particularly climate impacts. Using aquaculture to support conservation goals - known as conservation aquaculture - is a relatively new approach for many reef building species, but it shows great promise for promoting species recovery and bolstering resilience to stressors. Concerns about aquaculture-associated risks, both known and potential, have often restricted the implementation of this tool to an emergency intervention following dramatic declines on reefs, when species or systems were unlikely to recover. Here, we combine expertise from coral and oyster reef ecosystems to consider the role of aquaculture as a conservation intervention for reefs, and provide recommendations for its timely development and targeted implementation. We highlight the importance of evaluating reef systems - alongside local stakeholders and Indigenous communities - to determine where and when the benefits of using aquaculture are most likely to outweigh the risks. We spotlight the importance of proactive monitoring to detect reef population declines, and the value of early aquaculture interventions to increase efficacy. Novel aquaculture approaches and technologies specifically designed for reef builders are considered, including techniques for building complex, multi-generational and multi-species reefs. We address the need for scaling up aquaculture-assisted reef recovery, particularly of corals, using high volume methods like those that have been successfully employed for oysters. We also recommend the immediate assessment and development of techniques to increase climate resilience of reef builders and we identify the challenges and trade-offs of these approaches. We highlight the use of proof-of-concept projects to test these promising methods, and we advise tracking of all interventions over time to determine their long-term efficacy. Finally, we outline opportunities to leverage novel partnerships among conservation, industry, and community interests that utilize aquaculture to facilitate the conservation of reefs. Developing conservation aquaculture approaches now is critical to position managers, scientists, and restoration practitioners to implement this intervention in timely and effective ways to support resilient reef and human communities worldwide.

Measuring the short-term economic impacts of ecological restoration

Increasing demand for ecological restoration has resulted in the development of a “restoration economy” in the United States. Often, the implementation phase of restoration efforts involves substantial capital and labor investments, the short-term economic impacts of which should not be ignored when evaluating the outcomes of restoration efforts. This publication describes the relevant economic impact analysis methods and summarizes a case study application of these methods for the restoration of the Lone Cabbage Reef (LCR) Complex, a recently restored oyster reef in Florida. It should be useful to local governments, outreach and Extension agents, and management agency personnel who want to better understand the economic impacts of restoration actions.

First-Year Performance of the Pervious Oyster Shell Habitat (POSH) along Two Energetic Shorelines in Northeast Florida

Novel living shoreline methods are being developed to minimize negative environmental impact while maintaining strength and effectiveness in high-energy systems. The “Pervious Oyster Shell Habitat” (POSH) is a novel structure composed of oyster shells bound by a thin layer of Portland cement into the shape of a dome. The structure’s makeup greatly reduces its environmental impact while providing optimal substrate for the provision of oyster reef habitat. Previous laboratory testing has demonstrated that the structure is robust, and this follow-up study assesses the structure’s performance in the estuarine environment. Oyster and barnacle densities were compared between POSH modules and the industry standard “Oyster Ball” model Reef BallTM along two energetic shorelines in northeast Florida. Oyster densities on the POSH were high and significantly greater than on the Oyster Ball at both sites. Barnacle densities did not differ between structures and did not appear to affect oyster recruitment. The size distribution of oysters on POSH and Oyster Ball modules was measured to assess the demographics and growth of oysters over time. Overall, demographics were similar among the two structures. Differences in oyster densities and demographics were greater at our more energetic site. Results show that the POSH can be an optimal structure for early oyster recruitment and reef development in energetic systems and should be considered by restoration stakeholders.

Setting the stones to restore and monitor European flat oyster reefs in the German North Sea

Abstract Ecological restoration includes specific technical phases over the course of an ecosystem recovery process. In the marine environment and for oyster reef restoration, the installation and implementation of pilot reefs close the gap between feasibility studies with small‐scale experiments and designated upscaling for marine conservation measures. Against this background, this study presents the design, planning and installation of the first pilot oyster reef in offshore sublittoral regions of the North Sea. The work was conducted as part of marine protected area management in the Natura 2000 site Borkum Reef Ground in the German Bight, in the area of historical offshore oyster grounds. It includes logistical considerations, material selection, methodology for reef base construction and deployment of European flat oysters Ostrea edulis as spat‐on‐shell, young and adult single seed oysters, and spat‐on‐reef, as well as the development of an efficient monitoring approach for reef‐associated biodiversity. Native Oyster Restoration Alliance monitoring methodologies, such as underwater visual census and seabed images were selected, tested and successfully adapted for the pilot oyster reef and study site. The evaluation and optimization of offshore sublittoral oyster reef monitoring are presented here, and biodiversity metrics are put into perspective with data from recent and historical studies. Results show a few mobile fauna species (e.g., fish and decapods) as first colonizers after reef construction. One year later, biodiversity increased due to a larger number of invertebrate and fish species. However, the pilot oyster reef community still represents an early recolonization stage, with lower biodiversity than historical records. This study presents a proof of concept for the design, planning and construction of an offshore oyster reef and indicates stages in the recovery process. Strategies to optimize and to complement reef‐monitoring in challenging environments are discussed, emphasizing additional molecular and functional analyses for future assessments.

Protect oyster reefs in China’s coastal zone

Protect oyster reefs in China’s coastal zone

Real-time high resolution tracking of coral and oyster larvae

Coral and oyster reefs have declined greatly due to anthropogenic stressors. Low recruitment rates from larvae hamper recovery of these important ecosystems. Although much is known about factors affecting larval settlement, a detailed understanding of their swimming and substrate selection behaviour is lacking. Here, we present an approach to study coral and oyster larval behaviour in unprecedented detail, using a high resolution camera, choice chambers and behavourial analysis software. From second-by-second spatial data, we extracted variables such as swimming pattern, swimming speed and distance travelled using larvae between 0.2 and 3 mm in length. We applied this to larvae of the Caribbean brooding coral Favia fragum and show they locate their major settlement cue, coralline algae, within 90 min when placed in a choice chamber. Oyster (Ostrea edulis) larvae exhibited reduced swimming speed with age, suggesting pre-settlement behaviour. With the presented real-time high resolution tracking approach we can address new questions related to the behaviour of coral, oyster and other marine larvae, with applications in ecology, aquaculture and coastal engineering. Most notable is future development of “flypaper” substrates with cues to promote larval settlement on reefs, to aid restoration efforts.

Drone lidar-derived surface complexity metrics as indicators of intertidal oyster reef condition

Eastern oysters (Crassostrea virginica) generate structurally complex reef systems that offer diverse ecosystem services. However, there is limited understanding of how reef structure translates into reef condition. This knowledge gap might be better addressed if oyster reef structure could be more rapidly assessed. Conventional in situ monitoring techniques are often time-intensive, invasive, and do not provide spatially continuous information on the reef structure. Unoccupied Aircraft Systems (UAS), commonly referred to as drones, equipped with optical sensors can rapidly and non-invasively map intertidal oyster reef surfaces. We demonstrate how a digital surface model from UAS-based light detection and ranging (lidar) can enable very high-resolution characterization and monitoring of intertidal oyster reef surface morphology. Generalized linear models (GLMs) identified relationships between in situ live oyster counts and surface complexity metrics derived from digital surface models produced from lidar point clouds. Statistically significant relationships between surface complexity metrics (e.g., gray level co-occurrence features, volume to area ratio, skewness of elevation) and live oyster counts suggest that surface complexity provides useful proxies for reef condition. Advancing the application of remote sensing to intertidal oyster reefs can help identify reefs that are prone to degradation and inform conservation and restoration strategies.

Correlation of the Structural Characteristics of an Artificial Oyster Reef with Its Wake Region

Oyster reefs are currently at risk of severe decline due to dangerous human interference and its aftermath; hence, artificial oyster reefs (AORs) have been utilized for their restoration. AORs with high vertical reliefs interact with the surrounding flow, constitute a reverse flow, and create a wake region in which concentrated nutrients and food organisms exist. However, the correlations of the structural characteristics of an AOR with its wake regions have not been studied. Thus, we established 96 AOR models, carried out flow analyses, and obtained their wake volumes, considering shell orientation, composition, penetration depth, and growth stage. We found that the growth stage is the most critical parameter for establishing a normalized wake volume. This implies that the number of oyster shells (N) is the most critical factor in securing a normalized wake volume, in which their correlation was linear and significant (R2=0.89). We also found that the correlations of the normalized wake volume with blocking and surface complexity indices were linearly significant, respectively. Additionally, wake volume efficiency increased with the number of oyster shells; specifically, the criterion for wake volume efficiency of EI (efficiency index) ≥ 2.0 was satisfied when N≥50 per 900 cm2.

Tidal emersion effects on universal metrics, elemental contents, and health conditions of Pacific oyster (Crassostrea gigas) on artificial reefs in Yellow River Delta, China

Oysters form natural reefs and are important coastal foundation species that provide a wide range of ecosystem services. Clarification of the mechanisms by which tidal emersion affects oyster reef performance will help guide and direct future oyster reef restoration efforts. In the present study, we constructed artificial Pacific oyster (Crassostrea gigas) reefs in the coastal zones of the Yellow River Delta and quantified the effects of tidal emersion on the growth, density, biomass, element (carbon, nitrogen, phosphorus) content within tissues, and health conditions of oysters. The results showed that temperature change driven by the tidal emersion effect was one of the major forces affecting reef performance. In the experimental field, fully immersed oysters performed better than partially exposed ones in terms of growth and density. The mean biomass of the fully immersed oysters was 2.88-fold higher than that of the partially exposed oysters (p < 0.05). However, we found that tidal emersion had no significant effect on the carbon, nitrogen, and phosphorus content within oyster tissues. Oyster health condition revealed by the biochemical marker and whole-genome gene expression analyses demonstrated that the oysters partially exposed to air presented enhanced oxidative and lipid metabolism and were forced to allocate metabolic energy towards defense against stress rather than growth, which suggested sub-optimal health conditions. Overall, the study indicated that full immersion is optimal for oyster reef restoration in the experimental field. The results of this research will provide future conservationists, aquaculturists, and other specialists with a better understanding of tidal emersion effects on the success of oyster reef restoration to achieve region-specific restoration goals and improve protection of the coastal environment.

Changes in water flow alter community dynamics in oyster reefs

AbstractFluid (air or water) movements are key determinants of living systems from cellular to community levels of organization. Water flow can influence individual fitness and local population dynamics, but less is known about the collective response of natural communities to alteration in water flow because parameter responses to flow may be additive, juxtaposed, or interactive. To examine how changes in water flow affected initial larval settlement patterns of epifaunal and infaunal animals, colonization of larger individuals, and prey survival, we manipulated water flow (−50% or +47%) in situ using large wooden channels over small experimental oyster reefs. To test whether initial settlement patterns were additive or influenced by early post‐settlement processes (i.e., predation or competition reduced the densities), we compared patterns in short‐duration trials (two weeks) to those in longer duration deployments (six weeks). We found that minor changes in water flow (5–10 cm s−1) resulted in large changes in settlement of many species, predation levels, and the modification of initial settlement patterns. Settlement (two‐week intervals) and subsequent recruitment (six‐week intervals) increased for several species as flow rate increased. For most species, this relationship peaked at mid‐level flows (mud crabs, barnacles, and bivalves), whereas others (oysters) continued to increase with higher flow rates. Settlement patterns were best preserved in recruitment under high flow conditions where post‐settlement mortality was lower. Collectively, our results demonstrate how biological and physical processes are coupled in oyster reef systems, with relatively minor changes in water flow affecting pre‐ and post‐settlement processes.