In this work, Er/Al/Ge co-doped silica glasses with different GeO2 content (0–3 mol%), as well as Ge/Al co-doped silica glasses, are prepared by combining the sol–gel and high-temperature sintering methods. Further, the effects of the GeO2 content on the absorptions and emissions properties, and lifetimes of the glasses before and after 1KGy γ-ray irradiation are compared. The Er/Al/Ge co-doped silica fibers are prepared from a preform produced via modified chemical vapor deposition (MCVD) combined with nano sol-doping. The effects of Ge co-doping on the optical loss and amplifier gain of the Er-doped silica fibers (EDFs) before and after irradiation are also investigated. The related mechanism and species of the γ-ray radiation-induced color centers are revealed via radiation-induced-absorption (RIA) and continuous wave electron paramagnetic resonance (CW-EPR) spectroscopies. The results revealed that co-doping with GeO2 considerably improves the radiation resistance of the glass and exerts a slight effect on the spectral properties of the Er/Al/Ge co-doped silica glasses before irradiation. The RIA and CW-EPR spectra revealed that the aluminum–oxygen hole center (AlOHC) defects reduce with increasing GeO2 content because the intermediaries, the Ge-related oxygen-deficient centers (GeODC(I) and GeODC(II)), exhibit stronger abilities to trap the holes compared with the [AlO4/2]− group. This reduces the RIA level in the visible and near-infrared regions of the Er/Al/Ge co-doped silica glass. The irradiation experiment on the fiber further confirmed that the radiation resistance of EDFs can be considerably improved by Ge co-doping.