Oxic Respiration Research Articles

Tracking the Paleocene‐Eocene Thermal Maximum in the North Atlantic: A Shelf‐to‐Basin Analysis With a Regional Ocean Model

AbstractThe Paleocene‐Eocene Thermal Maximum (PETM), a transient greenhouse climate interval spurred by a large release of carbon to the ocean‐atmosphere approximately 56 million years ago, provides a geological point of comparison for potential effects of anthropogenic carbon emission. Geochemical proxies and fossil assemblages offer insight into the continental shelf response to the PETM, but global ocean‐atmosphere models cannot resolve shelf processes at sufficient resolution for model‐data comparisons. We present high‐resolution simulations of the pre‐PETM and PETM North Atlantic basin using the Regional Ocean Modeling System (ROMS), including a resolved continental shelf along the eastern margin of North America in the Salisbury Embayment. ROMS' high‐resolution, terrain‐following coordinate system permits greater vertical resolution and eddy resolution along continental margins while also capturing open‐ocean processes. We find that during the PETM, benthic oxygen concentration ([O2]) in the Salisbury Embayment decreases 18% to an average state of year‐round mild hypoxia, while average benthic calcite saturation (Ω) declines from 4.4 to 2.3. These benthic decreases are driven largely by enhanced benthic oxic respiration, which occurs despite no increase in shelf productivity. Instead, increased respiration stems from less vigorous off‐shelf transport of organic matter due to (a) weakened along‐shelf water currents and (b) weakened coastal upwelling that forces productivity closer to the shelf seafloor. Model results do not include riverine inputs, which would have further lowered benthic [O2] and Ω. Our data suggest lowered benthic calcite saturation and mild hypoxia as an upper bound on the oxygenation state of the Salisbury Embayment seafloor during the PETM.

A small marine biosphere in the Proterozoic.

The riverine supply of the globally limiting nutrient, phosphorus, to the ocean accounts for only a few percent of nutrient supply to photosynthetic organisms in surface waters. Recycling of marine organic matter by heterotrophic organisms provides almost all of the phosphorus that drives net primary production in the modern ocean. In the low-oxygen environments of the Proterozoic, the lack of free oxygen would have limited rates of oxic respiration, slowing the recycling of nutrients and thus limiting global rates of photosynthesis. A series of steady-state mass balance calculations suggest that the rate of net primary production in the ocean was no more than 10% of its modern value during the Proterozoic eon, and possibly less than 1%. The supply of nutrients in such a world would be dominated by river input, rather than recycling within the water column, leading to a small marine biosphere found primarily within estuarine environments.

A Mesoproterozoic iron formation

We describe a 1,400 million-year old (Ma) iron formation (IF) from the Xiamaling Formation of the North China Craton. We estimate this IF to have contained at least 520 gigatons of authigenic Fe, comparable in size to many IFs of the Paleoproterozoic Era (2,500-1,600 Ma). Therefore, substantial IFs formed in the time window between 1,800 and 800 Ma, where they are generally believed to have been absent. The Xiamaling IF is of exceptionally low thermal maturity, allowing the preservation of organic biomarkers and an unprecedented view of iron-cycle dynamics during IF emplacement. We identify tetramethyl aryl isoprenoid (TMAI) biomarkers linked to anoxygenic photosynthetic bacteria and thus phototrophic Fe oxidation. Although we cannot rule out other pathways of Fe oxidation, iron and organic matter likely deposited to the sediment in a ratio similar to that expected for anoxygenic photosynthesis. Fe reduction was likely a dominant and efficient pathway of organic matter mineralization, as indicated by organic matter maturation by Rock Eval pyrolysis combined with carbon isotope analyses: Indeed, Fe reduction was seemingly as efficient as oxic respiration. Overall, this Mesoproterozoic-aged IF shows many similarities to Archean-aged (>2,500 Ma) banded IFs (BIFs), but with an exceptional state of preservation, allowing an unprecedented exploration of Fe-cycle dynamics in IF deposition.

Fluxes of CH4, N2O, and kinetics of denitrification in disturbed and undisturbed forest soil in India

Raut, N., Sitaula, B. K., Bakken, L. R. and Dörsch, P. 2014. Fluxes of CH4, N2O, and kinetics of denitrification in disturbed and undisturbed forest soil in India. Can. J. Soil Sci. 94: 237–249. Soil disturbance due to grazing has been severe in Indian forests. This may alter ecosystem functions such as the cycling of nitrogen, and may hence affect the emission of greenhouse gases. We measured fluxes of CH4 and N2O with a closed chamber technique throughout one year in a forest of Western Ghats, Karnataka state, southwest India and determined the product stoichiometry of denitrification under standard anoxic incubations in soil samples from disturbed and undisturbed forest. In both areas, there was a net flux of CH4 from the atmosphere to the soil, and the undisturbed forest soil was a stronger sink for CH4 than the disturbed (P<0.05). The accumulated CH4 uptake averaged for all four seasons was 1.5 times higher in undisturbed than disturbed forest. Contrary to our expectation, the N2O emission was significantly higher for undisturbed than for disturbed forest (P<0.05). The accumulated N2O emission averaged for all four seasons was 1.6 times higher in undisturbed than disturbed forest. Together our data suggest that increase of N2O release and decrease in CH4 sink in soil induced by grazing disturbance can affect the global warming potential (GWP) of forest in this region. The incubation study showed a strong correlation between oxic respiration rate (R) and subsequent denitrification rate (D) and the ratio D/R was 1:3 and 1:6 for soil from undisturbed and disturbed soils, respectively. The N2O/(N2+N2O) product ratio of denitrification tended to be higher in undisturbed than disturbed site, despite lower soil pH.

Excessive use of nitrogen in Chinese agriculture results in high N2O/(N2O+N2) product ratio of denitrification, primarily due to acidification of the soils

China is the world's largest producer and consumer of fertilizer N, and decades of overuse has caused nitrate leaching and possibly soil acidification. We hypothesized that this would enhance the soils' propensity to emit N2O from denitrification by reducing the expression of the enzyme N2O reductase. We investigated this by standardized oxic/anoxic incubations of soils from five long-term fertilization experiments in different regions of China. After adjusting the nitrate concentration to 2 mM, we measured oxic respiration (R), potential denitrification (D), substrate-induced denitrification, and the denitrification product stoichiometry (NO, N2O, N2). Soils with a history of high fertilizer N levels had high N2O/(N2O+N2) ratios, but only in those field experiments where soil pH had been lowered by N fertilization. By comparing all soils, we found a strong negative correlation between pH and the N2O/(N2O+N2) product ratio (r2 = 0.759, P < 0.001). In contrast, the potential denitrification (D) was found to be a linear function of oxic respiration (R), and the ratio D/R was largely unaffected by soil pH. The immediate effect of liming acidified soils was lowered N2O/(N2O+N2) ratios. The results provide evidence that soil pH has a marginal direct effect on potential denitrification, but that it is the master variable controlling the percentage of denitrified N emitted as N2O. It has been known for long that low pH may result in high N2O/(N2O+N2) product ratios of denitrification, but our documentation of a pervasive pH-control of this ratio across soil types and management practices is new. The results are in good agreement with new understanding of how pH may interfere with the expression of N2O reductase. We argue that the management of soil pH should be high on the agenda for mitigating N2O emissions in the future, particularly for countries where ongoing intensification of plant production is likely to acidify the soils.

Organofacies and paleoenvironment of the Oligocene Maikop series of Angeharan (eastern Azerbaijan)

The Maikop Formation, deposited in eastern Azerbaijan during Oligocene and Early Miocene times, contains prolific source rocks with primarily Type II organic matter. Paleontological analyses of dinoflagellate cysts revealed a Lower to Upper Oligocene age for the investigated succession near Angeharan. A major contribution of aquatic organisms (diatoms, green algae, dinoflagellates, chrysophyte algae) and minor inputs from macrophytes and land plants to organic matter accumulation is indicated by n-alkane distribution patterns, composition of steroids and δ13C of hydrocarbon biomarkers. Microbial communities included heterotrophic bacteria, cyanobacteria, chemoautotrophic bacteria, as well as green sulfur bacteria. Higher inputs of terrigenous organic matter occurred during deposition of the Upper Oligocene units of the Maikop Formation from Angeharan mountains. The terpenoid hydrocarbon composition argues for angiosperm dominated vegetation in the Shamakhy–Gobustan area.High primary bioproductivity resulted in a stratified water column and the accumulation of organic matter rich sediments in the Lower Oligocene units of the Maikop Formation. Organic carbon accumulation during this period occurred in a permanently (salinity-) stratified, mesohaline environment with free H2S in the water column. This is indicated by low pristane/phytane ratios of all sediments (varying from 0.37–0.69), lower methylated-(trimethyltridecyl)chromans ratio in the lower units and their higher contents of aryl isoprenoids and highly branched isoprenoid thiophenes. Subsequently, the depositional environment changed to normal marine conditions with oxygen deficient bottom water. The retreat of the chemocline towards the sediment–water interface and enhanced oxic respiration of OM during deposition of the Upper Oligocene Maikop sediments is proposed.Parallel depth trends in δ13C of total OM, n-alkanes, isoprenoids and steranes argue for changes in the regional carbon cycle, associated with the changing environmental conditions. Increased remineralisation of OM in a more oxygenated water column is suggested to result in low TOC and hydrocarbon contents, as well as 15N enriched total nitrogen of the Upper Oligocene units.

Influence of porewater advection on denitrification in carbonate sands: Evidence from repacked sediment column experiments

Porewater flow enhances mineralization rates in organic-poor permeable sands. Here, a series of sediment column experiments were undertaken to assess the potential effect of advective porewater transport on denitrification in permeable carbonate sands collected from Heron Island (Great Barrier Reef). Experimental conditions (flow path length, advection rate, and temperature) were manipulated to represent conditions similar to near shore tropical environments. HgCl2-poisoned controls were used to assess whether reactions were microbially mediated. Overall, significant correlations were found between oxygen consumption and N2 production. The N:O2 slope of 0.114 implied that about 75% of all the nitrogen mineralized was denitrified. A 4-fold increase in sediment column length (from 10 to 40cm) resulted in an overall increase in oxygen consumption (1.6-fold), TCO2 production (1.8-fold), and denitrification (1.9-fold). Oxic respiration increased quickly until advection reached 80 Lm−2h−1 and then plateaued at higher advection rates. Interestingly, denitrification peaked (up to 336μmol N2 m−2 h−1) at intermediate advection rates (30–80Lm−2h−1). We speculate that intermediate advection rates enhance the development of microniches (i.e., steep oxygen gradients) within porous carbonate sands, perhaps providing optimum conditions for denitrification. The denitrification peak fell within the broad range of advection rates (often on scales of 1–100Lm−2h−1) typically found on continental shelves implying that carbonate sands may play a major, but as yet unquantified, role in oceanic nitrogen budgets.

Expression of nitrous oxide reductase in Paracoccus denitrificans is regulated by oxygen and nitric oxide through FnrP and NNR

The reductases performing the four steps of denitrification are controlled by a network of transcriptional regulators and ancillary factors responding to intra- and extracellular signals, amongst which are oxygen and N oxides (NO and ). Although many components of the regulatory network have been identified, there are gaps in our understanding of their role(s) in controlling the expression of the various reductases, in particular the environmentally important N2O reductase (N2OR). We investigated denitrification phenotypes of Paracoccus denitrificans mutants deficient in: (i) regulatory proteins (three FNR-type transcriptional regulators, NarR, NNR and FnrP, and NirI, which is involved in transcription activation of the structural nir cluster); (ii) functional enzymes (NO reductase and N2OR); or (iii) ancillary factors involved in N2O reduction (NirX and NosX). A robotized incubation system allowed us to closely monitor changes in concentrations of oxygen and all gaseous products during the transition from oxic to anoxic respiration. Strains deficient in NO reductase were able to grow during denitrification, despite reaching micromolar concentrations of NO, but were unable to return to oxic respiration. The FnrP mutant showed linear anoxic growth in a medium with nitrate as the sole NOx, but exponential growth was restored by replacing nitrate with nitrite. We interpret this as nitrite limitation, suggesting dual transcriptional control of respiratory nitrate reductase (NAR) by FnrP and NarR. Mutations in either NirX or NosX did not affect the phenotype, but the double mutant lacked the potential to reduce N2O. Finally, we found that FnrP and NNR are alternative and equally effective inducers of N2OR.

Carbon Cycling and the Coupling Between Proton and Electron Transfer Reactions in Aquatic Sediments in Lake Champlain

We used fine-scale porewater profiles and rate measurements together with a multiple component transport–reaction model to investigate carbon degradation pathways and the coupling between electron and proton transfer reactions in Lake Champlain sediments. We measured porewater profiles of O2, Mn2+, Fe2+, HS−, pH and pCO2 at mm resolution by microelectrodes, and profiles of NO3 −, SO4 2−, NH4 +, total inorganic carbon (DIC) and total alkalinity (TA) at cm resolution using standard wet chemical techniques. In addition, sediment–water fluxes of oxygen, DIC, nitrate, ammonium and N2 were measured. Rates of gross and net sulfate reduction were also measured in the sediments. It is shown that organic matter (OM) decomposes via six pathways: oxic respiration (35.2%), denitrification (10.4%), MnO2 reduction (3.6%), FeOOH reduction (9.6%), sulfate reduction (14.9%), and methanogenesis (26.4%). In the lake sediments, about half of the benthic O2 flux is used for aerobic respiration, and the rest is used for the regeneration of other electron acceptors produced during the above diagenetic reactions. There is a strong coupling between O2 usage and Mn2+ oxidation. MnO2 is also an important player in Fe and S cycles and in pH and TA balance. Although nitrate concentrations in the overlying water were low, denitrification becomes a quantitatively important pathway for OM decomposition due to the oxidation of NH4 + to NO3 −. Finally, despite its low concentration in freshwater, sulfate is an important electron acceptor due to its high efficiency of internal cycling. This paper also discusses quantitatively the relationship between redox reactions and the porewater pH values. It is demonstrated here that pH and pCO2 are sensitive variables that reflect various oxidation and precipitation reactions in porewater, while DIC and TA profiles provide effective constraints on the rates of various diagenetic reactions.

Organic matter mineralisation in the hypolimnion of an eutrophic Maar lake

Constraints on hypolimnetic methane production in productive lakes are of interest owing to the importance of methane emissions from lakes for the atmospheric methane burden. We studied carbon fluxes and terminal electron accepting processes in the hypolimnion of eutrophic Meerfelder Maar, Germany. Carbon fluxes from epilimnion and sediments were estimated using sediment traps, porewater analysis and incubation techniques. The contribution of various redox processes to overall dissolved inorganic carbon (DIC) production was quantified from a seasonal hypolimnetic mass balance. Carbon sedimentation rates were 22 mmol m−2 d−1 from the epilimnion and 20–34 mmol m−2 d−1 from the hypolimnion. Anaerobic respiration accounted for a DIC production of 21 mmol m−2 d−1, and was thus capable of using a substantial part of primary production. The diffusive C flux from the sediment was small in comparison, although potential respiration rates in incubation experiments reached 63 – 75 mmol m−2 d−1. Ebullition of methane occurred, but could not be quantified. Following depletion of dissolved oxygen (DO) and nitrate, iron and sulphate reduction and methanogenesis proceeded concurrently in the hypolimnion. Estimated hypolimnetic DIC production decreased in the order methanogenesis (2267 mmol m−2) > oxic respiration (880 mmol m−2) > sulphate reduction (575mmolm−2) > denitrification (159 mmol m−2) > acetogenesis (157 mmol m−2) > iron reduction (19 – 144 mmol m−2). Methane production thus dominated respiration and was not inhibited by sulphate and iron reduction. It also strongly accelerated with increased carbon sedimentation rates in September, which apparently eased limiting factors on the process. Hypolimnetic methane production is thus likely an important process in similar lakes, even in the presence of other electron acceptors, and will contribute to methane emissions during fall turnover.

Modeling early diagenesis of sediment in Ago Bay, Japan: A comparison of steady state and dynamic calculations

We modified a model of early diagenesis to study the biogeochemical processes occurring in the sediment at Ago Bay, Japan, and compared results from steady state and dynamic calculations. In the model, rate expressions describe organic matter oxidation and oxidation of reduced species formed as a product of organic matter oxidation. Organic matter oxidation is broken down into oxic respiration, denitrification, and manganese, iron, and sulfate reduction. Transport processes include advection, molecular diffusion, bioturbation and bioirrigation by benthic macrofauna. Performance of the model was evaluated against the extensive observed data available from Tategami, an area in Ago Bay. Our steady-state calculation reasonably reproduced the year-averaged vertical profile and our dynamic calculation also captured the overall trend of seasonal variation in the concentration of material in the sediment. These results illustrate the validity of our model of early diagenesis. We also found an interesting point that is a discrepancy between the steady-state solution and the year-averaged data obtained using the dynamic calculation. This difference was probably caused by the non-linear nature of the system (non-linear dependency on temperature) and suggests the suitability of dynamic analysis for the sediment in subtropical sea areas such as Ago Bay. Sensitivity analysis revealed that the calculated concentration of materials in the sediment was strongly affected by changes in following parameters: the deposition flux of organic matter and iron hydroxide, transport parameters, Q10 values, and the mineralization rate of dissolved organic matter.

Application of the early diagenesis model to Ago Bay sediment, Japan: Comparison of the sediment characteristics between two observation sites

An early diagenesis model was developed and utilized to compare the material cycling characteristics of the sediment in aspects of the oxygen consumption, carbon, nitrogen, manganese, iron and sulfate at two measurement sites, Tategami and Takonobori, in Ago Bay, Japan.The model is a one dimensional vertical transport. The biogeochemical reactions in the model consist of primary and secondary reactions. The primary reaction describes the organic matter degradation, and the secondary reaction describes the reaction of reduced species produced by the primary reaction.In general, the model could reproduce most of the vertical concentration profiles of materials observed at those two measurement sites. The supplied particulate organic matter to the sediment surface is 14.69 mmol C/m2/day for both sites. The result shows that oxic respiration and sulfate reduction are dominant at Tategami, while sulfate reduction is dominant at Takonobori. We also found that sediment at Takonobori consumed less oxygen than at Tategami due to the release of dissolved organic matter from the sediment, which is transported mostly by irrigation process.

Origins and temporal scales of hypoxia on the Louisiana shelf: Importance of benthic and sub-pycnocline water metabolism

Hypoxic-to-anoxic conditions (2–0 mg O 2 l − 1 ) occur in the bottom waters of the northern Gulf of Mexico on the Louisiana shelf west of the Mississippi river delta during late spring and summer where the rate of oxygen consumption exceeds its rate of input from physical transport plus photosynthetic generation. Although consumption of oxygen in the water column primarily via oxic respiration is an important process, the loss of oxygen at and near the seafloor may also be an important sink contributing to seasonal low oxygen conditions in the relatively shallow overlying waters in this region. Associated with the flux of oxygen into the sediments is the flux of nutrients out of the sediments from the remineralization of sedimentary organic matter via a number of possible electron acceptors. The nutrients that are released from the sediment can potentially stimulate further primary production. This can lead to generation of oxygen in the water column and production of organic matter, much of which can be transported to the seafloor where it again becomes a sink for oxygen. A non-steady-state data driven numeric benthic–pelagic model was developed to investigate the role of sediment and water-column metabolism in the development of hypoxia on the Louisiana shelf. The model simulations bare out the importance of sediment oxygen demand as the primary sink for oxygen at the beginning and end of a hypoxic event on the shelf, but once hypoxia has developed, the sediments, now isolated from the oxygen-rich surface waters, are driven into a more anoxic mode, becoming more dependent on sulfate and metal reduction. As a result, the bottom water near the pycnocline becomes the major sink for oxygen. Model simulations also suggest that there is a delay of several weeks between metabolite production (especially ammonium) and its efflux from the sediments. Thus the maximum sediment ammonium export occurs in September and October in time to fuel autumnal phytoplankton production, thereby continuing a biogeochemical cycle that expands the temporal and spatial scales of hypoxia on the Louisiana shelf.

Zooxanthellae Harvested by Ciliates Associated with Brown Band Syndrome of Corals Remain Photosynthetically Competent

Brown band syndrome is a new coral affliction characterized by a local accumulation of yet-unidentified ciliates migrating as a band along the branches of coral colonies. In the current study, morphologically intact zooxanthellae (= Symbiodinium) were observed in great numbers inside the ciliates (>50 dinoflagellates per ciliate). Microscale oxygen measurements and variable chlorophyll a fluorescence analysis along with microscopic observations demonstrated that zooxanthellae within the ciliates are photosynthetically competent and do not become compromised during the progression of the brown band zone. Zooxanthellae showed similar trends in light acclimation in a comparison of rapid light curve and steady-state light curve measures of variable chlorophyll a fluorescence. Extended light exposure of steady-state light curves resulted in higher quantum yields of photosystem II. The brown band tissue exhibited higher photosynthetically active radiation absorptivity, indicating more efficient light absorption due to a higher density of zooxanthellae in the ciliate-dominated zone. This caused relatively higher gross photosynthesis rates in the zone with zooxanthella-containing ciliates compared to healthy coral tissue. The observation of photosynthetically active intracellular zooxanthellae in the ciliates suggests that the latter can benefit from photosynthates produced by ingested zooxanthellae and from photosynthetic oxygen production that alleviates diffusion limitation of oxic respiration in the densely populated brown band tissue. It remains to be shown whether the zooxanthellae form a stable symbiotic association with the ciliate or are engulfed incidentally during grazing on coral tissue and then maintained as active inside the ciliate for a period before being digested and replaced by new zooxanthellae.

Models of oxic respiration, denitrification and sulfate reduction in zones of coastal upwelling

Coastal upwelling zones support some of the highest rates of primary production in the oceans. The settling and subsequent decomposition of this organic matter promotes oxygen depletion. In the Eastern tropical North and South Pacific and the Arabian Sea, large tracts of anoxic water develop, where intensive N 2 production through denitrification and anammox accounts for about 1/3 of the total loss of fixed nitrogen in the marine realm. It is curious that despite extensive denitrification in these waters, complete nitrate removal and the onset of sulfate reduction is extremely rare. A simple box model is constructed here to reproduce the dynamics of carbon, oxygen and nutrient cycling in coastal upwelling zones. The model is constructed with five boxes, where water is exchanged between the boxes by vertical and horizontal mixing and advection. These primary physical drivers control the dynamics of the system. The model demonstrates that in the absence of nitrogen fixation, the anoxic waters in a coastal upwelling system will not become nitrate free. This is because nitrate is the limiting nutrient controlling primary production, and if nitrate concentration becomes too low, primary production rate drops and this reduces rates of nitrate removal through N 2 production. With nitrogen fixation, however, complete nitrate depletion can occur and sulfate reduction will ensue. This situation is extremely rare in coastal upwelling zones, probably because nitrogen-fixing bacteria do not prosper in the high nutrient, turbid waters as typically in these areas. Finally, it is predicted here that the chemistry of the upwelling system will develop in a similar matter regardless whether N 2 production is dominated by anaerobic ammonium oxidation (anammox) or canonical heterotrophic denitrification.

Microscale mineralization pathways in surface sediments: A chemical sensor study in Lake Baikal

We used an array of ion-selective electrodes (oxygen [O2], hydrogen [H+], carbonate [CO32-], calcium [Ca2+], ammonium [NH4+], and nitrate [NO3-]) with a micromanipulator to study mineralization processes in the surface sediments in Lake Baikal. Concentration profiles at submillimeter resolution were measured in sediment cores from four depths (160-1,400 m) in the South Basin. Oxidation rates of organic carbon (C) estimated from O2 and NO3- profiles measured in March and July 2001 ranged between 2.2 and 4.9 mmol C m-2 d-1. The characteristic shape of the O2 profiles allowed separation of oxidation of organic carbon from reoxidation of reduced compounds at the oxic-anoxic boundary. Of the benthic carbon turnover, 60-75% was metabolized through oxic respiration and 11-28% through anoxic mineralization. The remainder (12-14%) was due to denitrification. Carbon dioxide (CO2) profiles calculated from O2 agreed well with those from pH and CO32-, supporting the concept that oxic respiration was the prevailing mineralization pathway. Alkalinity balance calculated from flux rates of reduced compounds and bicarbonate (HCO3-) calculated from pH and CO32- profiles showed that the sediment was a sink for alkalinity. The flux rates in the range of 0.13-1.0 mmol m-2 d-1 were caused by buffering the hydrogen ions (H+) generated from reoxidation processes of reduced compounds. Potential dark CO2 assimilation by chemoautotrophic bacteria in the sediment was 0.03-0.1 mmol C m-2 d-1. Because of the long O2 exposure time of 25-2,500 yr, however, only 3-14% of the initially settled organic carbon was finally buried in the sediments, forming the paleolimnological record of Lake Baikal.

Rapid sediment accumulation and microbial mineralization in forests of the mangrove Kandelia candel in the Jiulongjiang Estuary, China

Rates of sediment accumulation and microbial mineralization were examined at three Kandelia candel forests spanning the intertidal zone along the south coastline of the heavily urbanized Jiulongljiang Estuary, Fujian Province, China. Mass sediment accumulation rates were rapid (range: 10–62 kg m −2 y −1) but decreased from the low- to the high-intertidal zone. High levels of radionuclides suggest that these sediments originate from erosion of agricultural soils within the catchment. Mineralization of sediment carbon and nitrogen was correspondingly rapid, with total rate of mineralization ranging from 135 to 191 mol C m −2 y −1 and 9 to 11 mol N m −2 y −1; rates were faster in summer than in autumn/winter. Rates of mineralization efficiency (70–93% for C; 69–92% for N) increased, as burial efficiency (7–30% for C; 8–31% for N) decreased, from the low-to the high-intertidal mangroves. Sulphate reduction was the dominant metabolic pathway to a depth of 1 m, with rates (19–281 mmol S m −2 d −1) exceeding those measured in other intertidal deposits. There is some evidence that Fe and Mn reduction-oxidation cycles are coupled to the activities of live roots within the 0–40 cm depth horizon. Oxic respiration accounted for 5–12% of total carbon mineralization. Methane flux was slow and highly variable when detectable (range: 5–66 μmol CH 4 m −2 d −1). Nitrous oxide flux was also highly variable, but within the range (1.6–106.5 μmol N 2O m −2 d −1) measured in other intertidal sediments. Rates of denitrification were rapid, ranging from 1106 to 3780 μmol N 2 m −2 d −1, and equating to 11–20% of total sediment nitrogen inputs. Denitrification was supported by rapid NH 4 release within surface deposits (range: 3.6–6.1 mmol m −2 d −1). Our results support the notion that mangrove forests are net accumulation sites for sediment and associated elements within estuaries, especially Kandelia candel forests receiving significant inputs as a direct result of intense human activity along the south China coast.

Respiration, dissolution, and the lysocline

Here I synthesize the results of several types of measurements of organic carbon respiration and calcium carbonate dissolution rates in pelagic seafloor sediments. Measurements of pore water oxygen demonstrate that most of the respiration takes place very near the sediment‐water interface, with a scale depth of a few millimeters. The remainder of the oxic respiration occurs much deeper in the sediments, with a scale depth of several centimeters. All measures of respiration from locations as disparate as the tropical Pacific and Atlantic, and the subtropical North Atlantic agree that pelagic seafloor rates of oxic respiration of organic carbon are relatively independent of depth and location, with the exception of sediments beneath the Pacific eastern equatorial upwelling zone. Calcite dissolution in seafloor sediments requires forcing by respiration‐produced CO2, and rates are consistent with a first‐order dependence on pore water undersaturation, solubility as determined by Mucci [1983] at atmospheric pressure, and locally variable mass‐specific dissolution rate constants. Respiration‐driven calcite dissolution fluxes predicted by this combination of respiration and dissolution rate expressions are significantly lower than many previous estimates. Comparison of dissolution fluxes in the oligotrophic open ocean measured by other researchers with benthic chamber incubation techniques with those predicted by this combination of rate expressions is, within stated uncertainties, in agreement in all but one case, questioning the need for complicated mechanisms such as surface buffering or authigenic precipitation to explain seafloor calcite diagenesis. Applying these kinetics to a simple one‐dimensional, steady state model of the bulk calcite content and sediment accumulation rates of the sediment mixed layer yields results consistent with observations of the seafloor lysocline, the region of transition from high calcite to low‐calcite sediments, on the Ceara Rise in the western tropical North Atlantic and the Ontong‐Java Plateau in the western equatorial Pacific. Scenarios ignoring dissolution driven by respiration‐produced CO2 in pore waters and using the high‐order dependence on undersaturation and very large dissolution rate constants implied by some earlier laboratory studies do not simulate these observations. While the scheme represented here does, in fact, imply a strong shift in the locus of carbonate dissolution toward the sediment water interface as bottom‐water saturation decreases, as implied by the observations of Martin et al. [2000], no simple combination of sediment transport coefficients and reaction kinetics can reproduce the observation of increasing 14C age as dissolution progresses. These results emphasize the importance of accurate knowledge of the kinetics of respiration and dissolution to interpretation of either the present‐day or paleolysocline.

Influence of organic carbon decomposition on calcite dissolution in surficial sediments of a freshwater lake

A multi-sensor approach was used to determine high-resolution porewater gradients of Ca 2+, CO 3 2−, H + and O 2 in sediment cores along a depth transect from eutrophic Lake Sempach (Switzerland). We quantified the reproducibility of measurements and analyzed concentration profiles with a one-dimensional diffusion-reaction model to quantify benthic fluxes. Calculation of oxic respiration in the sediment showed that almost all settled organic carbon was degraded with O 2 at shallow depths while only 28% was decomposed aerobically at the deepest location. Fluxes were highest at 8 m depth (24.4 mmol m −2 d −1) and lowest at the deepest site of 85 m (7.1 mmol m −2 d −1). Dissolution of calcite from the sediment was also depth dependent. A total of 1.1 mmol m −2 d −1 was found for the shallowest site, and values decreased with depth to 0.6 mmol m −2 d −1 at the deepest site.

Dissolved organic carbon in sediments from the eastern North Atlantic

Abstract Profiles of dissolved organic carbon (DOC) were measured in the pore water of sediments from 1000, 2000 and 3500 m water depth in the eastern North Atlantic. A net DOC accumulation in the pore waters was observed, which followed closely the zonation of microbial respiration in these sediments. The concentration of pore water DOC in the zone of oxic respiration was elevated relative to that in the bottom ocean water. The resulting upward gradient across the sediment–water interface indicated a steady state diffusive benthic flux, F DOC , of 0.25–0.44 mmol m −2 day −1 from these sediments. Subsequent increase in the concentration of DOC in the pore water occurred only in the sediments from 1000 and 2000 m water depth that supported anoxic respiration, leading to a deep concentration maximum. By contrast, in the sediments from 3500 m water depth, a deep concentration minimum was measured, coincident with minimal postoxic respiration in this near-abyssal setting. The gradient-based F DOC represented approximately 14% of the total remineralized organic carbon (TCR=sum of F DOC and depth-integrated organic carbon oxidation rate) in the sediments from 1000 and 2000 m water depth, while it was 36% of the TCR in the sediments from 3500 m water depth. A covariance of particulate organic carbon (POC) and pore water DOC with depth in the sediments was evident, more consistently at the deepest site. While the covariance can be related to biotic processes in these sediments, an alternative interpretation suggests a possible contribution of sorption to the biotic control on sedimentary organic carbon cycling. The steady state diagenetic conditions in which this may occur can be conceivable for some organic-poor deep-sea locations, but direct evidence is clearly required to validate them.