Outer Parenchyma Research Articles

Spatial profiling of in vivo diffusion-weighted MRI parameters in the healthy human kidney.

Diffusion-weighted MRI is a technique that can infer microstructural and microcirculatory features from biological tissue, with particular application to renal tissue. There is extensive literature on diffusion tensor imaging (DTI) of anisotropy in the renal medulla, intravoxel incoherent motion (IVIM) measurements separating microstructural from microcirculation effects, and combinations of the two. However, interpretation of these features and adaptation of more specific models remains an ongoing challenge. One input to this process is a whole organ distillation of corticomedullary contrast of diffusion metrics, as has been explored for other renal biomarkers. In this work, we probe the spatial dependence of diffusion MRI metrics with concentrically layered segmentation in 11 healthy kidneys at 3 T. The metrics include those from DTI, IVIM, a combined approach titled "REnal Flow and Microstructure AnisotroPy (REFMAP)", and a multiply encoded model titled "FC-IVIM" providing estimates of fluid velocity and branching length. Fractional anisotropy decreased from the inner kidney to the outer kidney with the strongest layer correlation in both parenchyma (including cortex and medulla) and medulla with Spearman correlation coefficients and p-values (r, p) of (0.42, <0.001) and (0.37, <0.001), respectively. Also, dynamic parameters derived from the three models significantly decreased with a high correlation from the inner to the outer parenchyma or medulla with (r, p) ranges of (0.46-0.55, <0.001). These spatial trends might find implications for indirect assessments of kidney physiology and microstructure using diffusion MRI.

Observations on flower and fruit anatomy in dioecious species of Cordia (Cordiaceae, Boraginales) with evolutionary interpretations

Detailed anatomical studies of flowers and fruits may render traits of phylogenetic importance, but are still rare in the Boraginales. An Old World clade of Cordia comprises many dioecious species, but the floral anatomy is largely unexplored and, hence, the structural basis for sex separation. Fresh material of buds, functionally unisexual flowers and fruits were studied using a stack shot camera. Fixed such material of Cordia crenata, C. cf. grandicalyx and C. sinensis was sectioned using a microtome and stained with safranin red and astra blue, and the gynoecial surface was studied using SEM. The stamens of the female flowers are largely intact, but do not produce pollen, whereas the gynoecium of the male flowers is highly reduced though develops ovules lacking an embryo sac. The morphologically rather unreduced stamens of the female flower may have undergone a shift of function from producing pollen towards attracting pollinators by optical signals. The outer parenchyma of the gynoecium is strongly stained and after fertilisation, one through three ovules are maturing towards seeds. The presence of more than a single seed enclosed in the undivided endocarp is rare in Cordiaceae.

An approach of using different curing temperature based on potato cv. Innovator periderm differentiation, sugar metabolism, and industrial quality

Excoriation damage is among the major causes of postharvest potato losses. Curing is known to increase the resistance of tubers to excoriation injury, with the temperature influencing the traumatic phellogen and periderm regeneration, as well as tuber processing quality. This study aimed to evaluate the effects of excoriation procedure and curing temperature on the industrial quality, histological characteristics, carbohydrate metabolism, and oxidative enzyme activity of potato tuber. Tubers with or without excoriation were cured at 8, 14, and 20°C for 15 days. Excoriation did not influence the levels of reducing sugars (RS), as well as polyphenoloxidase (PPO) and peroxidase (POD) activities. The concentrations of total soluble sugars (TSS) and non-reducing sugars (NRS) were higher in injured tubers, while reduction in curing temperature increased the concentrations of TSS, NRS, and RS. However, the sugar content was adequate as per the criteria of the pre-fried potato industry and potatoes classified in category 2 (USDA/fast-food industry color grading). The reduction in curing temperature also increased the activity of POD, despite the activity of PPO remaining unchanged. Formation of a closure layer from the outer parenchyma cells of the tuber that prevents desiccation and death of superficial cells, was observed. This protection was completed with the formation of the damage periderm. Periderm regeneration is faster at higher temperatures, 15 and 20°C, leading to a lower fresh mass loss and no enzymatic or non-enzymatic browning. The excoriation carried out at 14/20oC for 15 days was sufficient for curing, and for maintaining suitable post-fry quality of potatoes.

OsDDM1b Controls Grain Size by Influencing Cell Cycling and Regulating Homeostasis and Signaling of Brassinosteroid in Rice.

Snf2 family proteins are the crucial subunits of chromatin-remodeling complexes (CRCs), which contributes to the biological processes of transcription, replication, and DNA repair using ATP as energy. Some CRC subunits have been confirmed to be the critical regulators in various aspects of plant growth and development and in epigenetic mechanisms such as histone modification, DNA methylation, and histone variants. However, the functions of Snf2 family genes in rice were poorly investigated. In this study, the relative expression profile of 40 members of Snf2 family in rice was studied at certain developmental stages of seed. Our results revealed that OsCHR741/OsDDM1b (Decrease in DNA methylation 1) was accumulated highly in the early developmental stage of seeds. We further analyzed the OsDDM1b T-DNA insertion loss-of-function of mutant, which exhibited dwarfism, smaller organ size, and shorter and wider grain size than the wild type (Hwayoung, HY), yet no difference in 1,000-grain weight. Consistent with the grain size, the outer parenchyma cell layers of lemma in osddm1b developed more cells with decreased size. OsDDM1b encoded a nucleus, membrane-localized protein and was distributed predominately in young spikelets and seeds, asserting its role in grain size. Meanwhile, the osddm1b was less sensitive to brassinosteroids (BRs) while the endogenous BR levels increased. We detected changes in the expression levels of the BR signaling pathway and feedback-inhibited genes with and without exogenous BR application, and the alterations of expression were also observed in grain size-related genes in the osddm1b. Altogether, our results suggest that OsDDM1b plays a crucial role in grain size via influencing cell proliferation and regulating BR signaling and homeostasis.

Complex meristematic activity induced by Eucecidoses minutanus on Schinus engleri turns shoots into galls.

Gall-inducing organisms change the development of their host plant organs, resulting in ontogenetic patterns not observed in the non-galled plants. Distinct taxa induce galls on Schinus spp., manipulating meristematic patterns in the host plant in distinct ways. Here we report ontogenetic novelties induced in the lateral buds of S. engleri by Eucecidoses minutanus, a Cecidosidae, whose galls have been poorly understood. The anatomy, histochemistry, and histometry of galls in distinct phases of development, non-galled buds, and stems of Schinus engleri were analyzed in parallel with the instars of E. minutanus to detail the morphogenetic changes in the host with each larval stage. Ontogenetic phases of the galls were intricately associated with larval development. First and second-instar larvae induced pericycle and pith cells to dedifferentiate into the gall inner meristem, where hyperplasia and cell hypertrophy characterized the growth and development phase of the gall. The innermost layers were lipid-rich nutritive cells that lined the larval chamber. Additional vascular bundle rows were produced in young galls. Third and fourth instar-larvae were associated with the gall maturation phase: centripetal lignification of the outer parenchyma cell layers, epidermal stratification, and activation of a cambium-like meristem (CLM). The CLM activity resulted in new layers of nutritive cells that differentiated inward as the first layers of nutritive cells were consumed by E. minutanus larvae, and, also, in more parenchyma cell layers that formed outward. All tissues between the innermost layer of nutritive tissue that surround the gall chamber and the outermost layer of the dermal system that externally covers the gall form the gall wall, and increased in thickness until the end of gall maturation. E. minutanus induces a structurally complex globoid stem gall, modifying all host plant tissues and stimulating a novel meristematic pattern in S. engleri. The gall developmental stages are each related to specific gall-inducing instars, as gall development progresses according to the development of E. minutanus.

Unraveling the accumulation and localization of selenium and barium in Brazil nuts using spectroanalytical techniques

Brazil nuts are native from the Amazon rainforest and their nuts are consumed worldwide having good sensory acceptability. However, knowledge gaps remain concerning elemental composition, localization, and interactions in Brazil nuts. This study presents a detailed assessment regarding the concentration and localization of relevant elements in Brazil nuts using different and complementary spectroanalytical techniques. Samples were collected from six sites of the Brazilian Amazon (Acre, Rondônia, Amazonas, Roraima, Pará, and Amapá) and showed results for selenium (Se) concentration ranging from 0.46 to 356 μg g−1 and barium (Ba) from 12.5 to 7,177 μg g−1. Then, a linear regression model fitted between Se and Ba concentration in Brazil nuts provided an R2 = 0.30. The spatial distribution of major and trace elements in Brazil nuts varied depending on the site of origin and concentration in the sample. The 2D maps performed via μ-XRF showed that Se accumulates mainly in the outer parenchyma tissue of Brazil nuts seeds forming a “ring” shape while Ba tends to accumulate in the epidermal tissue. The possibility of forming compounds of low solubility in Brazil nuts such as BaSO4 and BaSeO4 tends to increase when Ba and Se are higher respectively in the samples studied.

A chloride efflux transporter, BIG RICE GRAIN 1, is involved in mediating grain size and salt tolerance in rice.

Grain size is determined by the size and number of cells in the grain. The regulation of grain size is crucial for improving crop yield; however, the genes and molecular mechanisms that control grain size remain elusive. Here, we report that a member of the detoxification efflux carrier /Multidrug and Toxic Compound Extrusion (DTX/MATE) family transporters, BIG RICE GRAIN 1 (BIRG1), negatively influences grain size in rice (Oryza sativa L.). BIRG1 is highly expressed in reproductive organs and roots. In birg1 grain, the outer parenchyma layer cells of spikelet hulls are larger than in wild-type (WT) grains, but the cell number is unaltered. When expressed in Xenopus laevis oocytes, BIRG1 exhibits chloride efflux activity. Consistent with this role of BIRG1, the birg1 mutant shows reduced tolerance to salt stress at a toxic chloride level. Moreover, grains from birg1 plants contain a higher level of chloride than those of WT plants when grown under normal paddy field conditions, and the roots of birg1 accumulate more chloride than those of WT under saline conditions. Collectively, the data suggest that BIRG1 in rice functions as a chloride efflux transporter that is involved in mediating grain size and salt tolerance by controlling chloride homeostasis.

Direct evidence for dynamics of cell heterogeneity in watercored apples: turgor-associated metabolic modifications and within-fruit water potential gradient unveiled by single-cell analyses

Watercore is a physiological disorder in apple (Malus × domestica Borkh.) fruits that appears as water-soaked tissues adjacent to the vascular core, although there is little information on what exactly occurs at cell level in the watercored apples, particularly from the viewpoint of cell water relations. By combining picolitre pressure-probe electrospray-ionization mass spectrometry (picoPPESI-MS) with freezing point osmometry and vapor pressure osmometry, changes in cell water status and metabolisms were spatially assayed in the same fruit. In the watercored fruit, total soluble solid was lower in the watercore region than the normal outer parenchyma region, but there was no spatial difference in the osmotic potentials determined with freezing point osmometry. Importantly, a disagreement between the osmotic potentials determined with two methods has been observed in the watercore region, indicating the presence of significant volatile compounds in the cellular fluids collected. In the watercored fruit, cell turgor varied across flesh, and a steeper water potential gradient has been established from the normal outer parenchyma region to the watercore region, retaining the potential to transport water to the watercore region. Site-specific analysis using picoPPESI-MS revealed that together with a reduction in turgor, remarkable metabolic modifications through fermentation have occurred at the border, inducing greater production of watercore-related volatile compounds, such as alcohols and esters, compared with other regions. Because alcohols including ethanol have low reflection coefficients, it is very likely that these molecules would have rapidly penetrated membranes to accumulate in apoplast to fill. In addition to the water potential gradient detected here, this would physically contribute to the appearance with high tissue transparency and changes in colour differences. Therefore, it is concluded that these spatial changes in cell water relations are closely associated with watercore symptoms as well as with metabolic alterations.

Ultrastructural Study of the Outer Cortex, Deep Cortex and Medulla of Mesenteric Lymph Node in Adult Goats

Background: A mesenteric lymph node in the sub pyloric region which is the longest among all mesenteric lymph nodes in adult goats was identified for study under the scanning electron microscope. Methods: The outer cortical, deep cortical and medullary parenchyma of the collected lymph nodes was thoroughly screened under VEGA3 TESCAN. The outer cortical parenchyma revealed T lymphocytes, B lymphocytes, Sinus Lining Cells (SLC) and Sinus Reticular Cells (SRC) at a magnification of 9600x. The deep cortical parenchyma revealed Reticular cells, T lymphocytes and Interdigitating cells (IDC) at 8000x magnification.Result: The medullary parenchyma revealed T lymphocytes, B lymphocytes, Sinus Lining Cells (SLC), Fibrous Reticular Cells (FRC) and medullary sinuses at a magnification of 8500x. Plasma cells and lymphocytes also remained in the sinus. The morphology and relations of the cells observed were recorded.

Structural aspects of cypsela and seed development of Trichocline catharinensis (Cabrera): a Brazilian endemic species.

This is the first study to describe in a timescale morphohistological and ultrastructural characteristics of fruit (cypsela) and seed development in Trichocline catharinensis, which was completed 21days after anthesis (DAA). At anthesis, we identified an ovary with three differentiated regions, including the inner epidermis, inner part, and outer epidermis. The mature ovule showed an integument with the outer epidermis, integumentary parenchyma, and endothelium. Cells around the endothelium form the periendothelial zone with thick cell walls that showed Periodic acid-Schiff (PAS)-positive reaction. The periendothelial zone and endothelium showed degradation of the cells during embryogenesis. The main stages of embryo development from fecundation through mature seed were identified. The ripe cypsela showed the pericarp (exocarp), seed coat (exotesta), and remaining endosperm surrounding the embryo. Mature embryos were straight with shoot apical meristem (SAM), and root apical meristem (RAM) was separated by the hypocotyl. Light microscopy (LM) and transmission electron microscopy (TEM) analyses indicate cells with characteristics of meristem cells, as well as proteins and lipid bodies and mitochondria with few cristae in cotyledon cells. Our findings provide insight into taxonomic and physiological studies by detailing cypsela and seed ontogenesis from an endemic and vulnerable Asteraceae from southern Brazil. This study is also a starting point for establishing the biological criteria for seed harvesting and future studies of seed physiology and conservation of plant genetic resource.

Morphological Characteristics and Allometric Relationships of Shoot in Two Undergrowth Plants: Polygonatum odoratum and Polygonatum multiflorum

The main purpose of this investigation was to describe the spatial arrangement of shoot tissues, as seen in transverse section, and allometric relationships in two contrasting species of Polygonatum i.e., Polygonatum odoratum which commonly grows in mixed pine-oak forest with shoots rectangular in shape, and Polygonatum multiflorum found in oak-hornbeam forest with cylindrical shoots. The mass and length of the aerial shoots of each individual plant were measured. The shoot regions of each plant were then categorized as basal (b), central (c) or apical (a). Transverse sections of these shoot regions were subsequently cut, and the following parameters were measured: (1) Diameter of shoots, (2) thickness of the outer and inner zones of parenchyma and (3) thickness of the sclerenchyma zone. Additional allometric relationships between the various measurements were computed and determined as Pearson’s correlation coefficients (r). Both species of Polygonatum differed significantly with respect to the length, diameter and thickness of the outer zone of parenchyma. Shoots of P. multiflorum were taller but narrower than those of P. odoratum, which had a significantly wider zone of outer parenchyma. Allometric relationships were stronger for P. multiflorum, and for both species, they were generally stronger in the basal part of the shoot. We conclude that in P. multiflorum, the strong correlation between the diameter and length of the shoot seems to be important to the growth in shaded environments.

Characterization of essential oil distribution in the root cross-section of Valeriana officinalis L. s.l. by using histological imaging techniques

BackgroundThe essential oil is an important compound of the root and rhizome of medicinally used valerian (Valeriana officinalis L. s.l.), with a stated minimum content in the European pharmacopoeia. The essential oil is located in droplets, of which the position and distribution in the total root cross-section of different valerian varieties, root thicknesses and root horizons are determined in this study using an adapted fluorescence-microscopy and automatic imaging analysis method. The study was initiated by the following facts:A probable negative correlation between essential oil content and root thickness in selected single plants (elites), observed during the breeding of coarsely rooted valerian with high oil content.Higher essential oil content after careful hand-harvest and processing of the roots.ResultsIn preliminary tests, the existence of oil containing droplets in the outer and inner regions of the valerian roots was confirmed by histological techniques and light-microscopy, as well as Fourier-transform infrared spectroscopy. Based on this, fluorescence-microscopy followed by image analysis of entire root cross-sections, showed that a large number of oil droplets (on average 43% of total oil droplets) are located close to the root surface. The remaining oil droplets are located in the inner regions (parenchyma) and showed varying density gradients from the inner to the outer regions depending on genotype, root thickness and harvesting depth.ConclusionsFluorescence-microscopy is suitable to evaluate prevalence and distribution of essential oil droplets of valerian in entire root cross-sections. The oil droplet density gradient varies among genotypes. Genotypes with a linear rather than an exponential increase of oil droplet density from the inner to the outer parenchyma can be chosen for better stability during post-harvest processing. The negative correlation of essential oil content and root thickness as observed in our breeding material can be counteracted through a selection towards generally high oil droplet density levels, and large oil droplet sizes independent of root thickness.

Suppression of microRNA159 impacts multiple agronomic traits in rice (Oryza sativa L.)

BackgroundmicroRNAs (miRNAs) are important regulators in plant growth and development. miR159 is a conserved miRNA among different plant species and has various functions in plants. Studies on miR159 are mostly done on model plant, Arabidopsis thaliana. In rice, studies on miR159 were either based upon genome-wide expression analyses focused upon responses to different nitrogen forms and abiotic stress or upon phenotypic studies of transgenic plants overexpressing its precursor. STTM (Short Tandem Target Mimic) is an effective tool to block the activity of endogenous mature miRNA activity in plant. Therefore, specific roles of miR159 in rice could be explored by down regulating miR159 through STTM.ResultsIn this study, expression of mature miR159 was successfully suppressed by STTM which resulted in the increased expressions of its two targets genes, OsGAMYB and OsGAMYBL1 (GAMYB-LIKE 1). Overall, STTM159 plants exhibited short stature along with smaller organ size and reduction in stem diameter, length of flag leaf, main panicle, spikelet hulls and grain size. Histological analysis of stem, leaf and mature spikelet hull showed the reduced number of small vascular bundles (SVB), less number of small veins (SV) between two big veins (LV) and less cell number in outer parenchyma. Gene Ontology (GO) enrichment analysis of differentially expressed genes between wild type plants and STTM159 transgenic plants showed that genes involved in cell division, auxin, cytokinin (CK) and brassinosteroids (BRs) biosynthesis and signaling are significantly down-regulated in STTM159 plants.ConclusionOur data suggests that in rice, miR159 positively regulates organ size, including stem, leaf, and grain size due to the promotion of cell division. Further analysis from the RNA-seq data showed that the decreased cell divisions in STTM159 transgenic plants may result, at least partly from the lower expression of the genes involved in cell cycle and hormone homeostasis, which provides new insights of rice miR159-specific functions.

Characterising kiwifruit (Actinidia sp.) near skin cellular structures using optical coherence tomography

Pre-harvest growing conditions during the development of fruit have impacts on fruit quality at the time of harvest and during storage. These impacts may result in differences in the skin properties of the fruit and some sub-surface cellular structural changes, which have potential effects on postharvest fruit quality and storability. Optical coherence tomography (OCT) is a non-destructive imaging method that enables acquisition of three-dimensional (3D) images of sub-surface structures of semi-transparent and turbid objects. This technology is a potential tool to provide new information about the structural nature of horticulture products. This work used five commercial kiwifruit cultivars, ‘G3’, ‘G9’, ‘G14’, ‘Hort16A’ and ‘Hayward’, where ‘Hayward’ was also manipulated with different orchard management practices (crop load and girdling), to investigate the properties of the layers of structures immediately underneath the periderm. Fruit samples were harvested at commercial maturity and then 3D OCT images of the skins were captured prior to fruit quality assessment. An automated image processing protocol was established to enable visualisation and characterisation of larger near skin cellular structures in the outer parenchyma tissue. There was no obvious differentiation between the observed large cells and the stone cells that are present in Actinidia chinensis cultivars. Significant differences in the microstructures of the sub-surface cells were found amongst five commercial kiwifruit cultivars. In general ‘G3’, ‘G14’ and ‘Hayward’ had larger and greater numbers of large sub-surface cells than ‘G9’ and ‘Hort16A’. The volume fraction of large cells in the near skin tissue was lower for the yellow-fleshed cultivars (‘G3’, ‘G9’ and ‘Hort16A’) in comparison to the green-fleshed cultivars (‘G14’ and ‘Hayward’). Low crop load increased maximum large cell length. However, no other effects of crop load and girdling were observed on the microstructures of the large cells in ‘Hayward’. Overall, OCT was an efficient non-destructive technique that can be utilised to reveal the structures of skin and sub-surface cellular layers with high resolution. The developed image processing protocol was suitable for the processing of large data sets with acceptable accuracy. However, more work should be carried out to overcome image artefacts caused by surface lenticels and trichomes. Limitations caused by low penetration depth should also be improved to allow better representation of the whole fruit structure.

Mass spectrometry imaging reveals the sub-organ distribution of carbon nanomaterials.

Label and label-free methods to image carbon-based nanomaterials exist. However, label-based approaches are limited by the risk of tag detachment over time, and label-free spectroscopic methods have slow imaging speeds, weak photoluminescence signals and strong backgrounds. Here, we present a label-free mass spectrometry imaging method to detect carbon nanotubes, graphene oxide and carbon nanodots in mice. The large molecular weights of nanoparticles are difficult to detect using conventional mass spectrometers, but our method overcomes this problem by using the intrinsic carbon cluster fingerprint signal of the nanomaterials. We mapped and quantified the sub-organ distribution of the nanomaterials in mice. Our results showed that most carbon nanotubes and nanodots were found in the outer parenchyma of the kidney, and all three materials were seen in the red pulp of the spleen. The highest concentrations of nanotubes in the spleen were found within the marginal zone.

Biological management of the invasive Vachellia nilotica ssp. indica (Benth.) Kyal. & Boatwr. (Fabales: Mimosoideae) in tropical Australia: stress-inducing potential of Anomalococcus indicus Ramakrishna (Insecta: Hemiptera: Coccoidea: Lecanodiaspididae), an agent of promise

Vachellia nilotica ssp. indica (hereafter, V. n. indica) is an important tree weed in Australia. Its dense populations induce undesirable changes in the vast areas of northern Australia. Because chemical and mechanical management options appear unviable for various reasons, biological management of this tree is considered a better option. Among the many trialled arthropods in Australian context, Anomalococcus indicus, a lecanodiaspid native to India, has been identified as a potent-candidate, since in India, its native terrain, it is the most widespread and occurs throughout the year. Severe infestations of A. indicus cause defoliation, wilting and death of branches, and occasionally the tree. Populations of A. indicus have been brought into Australia and are being tested for its host specificity under quarantine conditions. This article reports the physiological damage and stress it inflicts in the shoots of V. n. indica. Younger-nymphal instars of A. indicus feed on cortical-parenchyma cells of young stems, whereas the older instars and adults feed from the phloem of old stems. Two conspicuous responses of V. n. indica arising in response to the feeding action of A. indicus are changes in the cell-wall dynamics and irregular cell divisions. The feeding action of A. indicus elicits a sequence of reactions in the stem tissues of V. n. indica such as differentiation of thick-walled elements in the outer cortical parenchyma, differential thickening of cells with supernumerary layers of either suberin or lignin, proliferations of parenchyma and phloem, wall thickening and obliteration of inner lumen of phloem cells, and the sieve plates plugged with callosic deposits. The responses are the culminations of interaction between the virulence factor (one or more of the salivary proteins?) from A. indicus and the resistance factor in V. n. indica. We have analysed structural changes in the context of their functions, by comparing the feeding action of A. indicus with that of other hemipteroids. From the level of stress it induces, this study confirms that A. indicus has the potential to be an effective biological management of V. n. indica in Australia.

Seed morphology of the native species of the genus Ribes L. Part 2. The characteristics of individual species

In this work the results of studies on the seed morphology of 6 native species of the genus &lt;em&gt;Ribes&lt;/em&gt; L.: &lt;em&gt;R. uva-crispa&lt;/em&gt; L., &lt;em&gt;R. nigrum&lt;/em&gt; L., &lt;em&gt;R. alpinum&lt;/em&gt; L., &lt;em&gt;R. petraeum&lt;/em&gt; Wulfen, &lt;em&gt;R. rubrum&lt;/em&gt; L. and &lt;em&gt;R. spicatum&lt;/em&gt; Robson are presented. The diagnostic features of the investigated seeds are: colour and sarcotesta structure, aril size, seed coverage by arils, seed outline and the length to width ratio. The complex of these features allows to differentiate such species, as &lt;em&gt;R. uva-crispa&lt;/em&gt;, &lt;em&gt;R. nigrum&lt;/em&gt; and &lt;em&gt;R. alpinum&lt;/em&gt;. The other species: &lt;em&gt;R. petraeum&lt;/em&gt;, &lt;em&gt;R. rubrum&lt;/em&gt; and &lt;em&gt;R. spicatum&lt;/em&gt; can not be seperated, on the basis of the seed. Within the seeds devoid of outer parenchyma) layers of exotesta only the seeds of &lt;em&gt;R. uva-crispa&lt;/em&gt; and &lt;em&gt;R. nigrum&lt;/em&gt; can be seperated. Then the seeds of other species look the same. Two keys to determine the seeds of the investigated species, based on the fruit features, fresh seeds and "cleaned" seeds form the recapitulation of the work.

BEAK-SHAPED GRAIN 1/TRIANGULAR HULL 1, a DUF640 gene, is associated with grain shape, size and weight in rice

Grain shape and size both determine grain weight and therefore crop yield. However, the molecular mechanisms controlling grain shape and size are still largely unknown. Here, we isolated a rice mutant, beak-shaped grain1 (bsg1), which produced beak-shaped grains of decreased width, thickness and weight with a loosely interlocked lemma and palea that were unable to close tightly. Starch granules were also irregularly packaged in the bsg1 grains. Consistent with the lemma and palea shapes, the outer parenchyma cell layers of these bsg1 tissues developed fewer cells with decreased size. Map-based cloning revealed that BSG1 encoded a DUF640 domain protein, TRIANGULAR HULL 1, of unknown function. Quantitative PCR and GUS fusion reporter assays showed that BSG1 was expressed mainly in the young panicle and elongating stem. The BSG1 mutation affected the expression of genes potentially involved in the cell cycle and GW2, an important regulator of grain size in rice. Our results suggest that BSG1 determines grain shape and size probably by modifying cell division and expansion in the grain hull.

Changes in carrot (Daucus carota) parenchyma at higher temperatures detected in vivo by dynamic mechanical (thermal) analysis

The outer parenchyma of carrot was tested using dynamic mechanical analysis (DMA), in air with 90% humidity between 30 and 90°C. Temperature plots of storage (SM i.e. elastic) and loss (LM i.e. inelastic) moduli were obtained. The SM and LM values were the basis for the calculation of the loss tangent (LT), the parameter expressing the ratio of inelastic to elastic parenchyma toughness. As expected, the tissue toughness decreased with increasing temperature. For both moduli, two characteristic temperature areas with temperature slope minima were observed--they were termed low (I) and high (II) temperature negative peaks on the temperature slope plots. It was shown that the negative peaks were related to an increase in the inelastic part of the tissue toughness. All plots were dependent on the temperature rate: increasing the temperature rate (from 0.5 to 2°C/min) resulted in a shift of both the negative peaks I and II to higher temperatures, thereby reducing I and increasing II. It was shown that the observed behaviour cannot be described by simple kinetic equations due to the time dependent and complicated character of the thermally induced changes. These changes were interpreted as a consequence of pore protein denaturation followed by changes of the stress inside the parenchyma cells.

Texture analysis in an apple progeny through instrumental, sensory and histological phenotyping

Phenotypic analysis of texture traits was performed in an apple progeny by three complementary approaches: two classical instrumental measurements (compression and penetrometry), sensory assessment and histological screening. The progeny was composed of 141 individuals harvested over 2 years. Sensory and instrumental texture were assessed at harvest and after 2 and 4 months of cold storage. Histological screening was performed by combining macro-vision of outer parenchyma sections and image analysis on fruits after 2 months storage. Harvest year was observed to have a major impact on texture phenotypes followed by storage and genetic factors. Principal component analysis of data from the instrumental texture evaluations showed that the two methods complemented each other in characterizing the texture of the apple progeny. Compression parameters correlated better than penetrometry variables with sensory descriptors related to crispness, firmness, and graininess. Cell size distribution differentiated individuals in the apple progeny. It correlated with instrumental texture analyses and with juiciness perception. All measured texture related traits showed that they were all under genetic control with high heritability values. Higher values were obtained for fruits after 2 months storage. These results provide ground for future search of new apple texture QTLs.