Oryza Sativa Seedlings Research Articles

Effects of Nitrogen Deficiency on the Photosynthesis, Chlorophyll a Fluorescence, Antioxidant System, and Sulfur Compounds in Oryza sativa.

Decreasing nitrogen (N) supply affected the normal growth of Oryza sativa (O. sativa) seedlings, reducing CO2 assimilation, stomatal conductance (gs), the contents of chlorophylls (Chl) and the ratio of Chl a/Chl b, but increasing the intercellular CO2 concentration. Polyphasic chlorophyll a fluorescence transient and relative fluorescence parameters (JIP test) results indicated that N deficiency increased Fo, but decreased the maximum quantum yield of primary photochemistry (Fv/Fm) and the maximum of the IPphase, implying that N-limiting condition impaired the whole photo electron transport chain from the donor side of photosystem II (PSII) to the end acceptor side of PSI in O. sativa. N deficiency enhanced the activities of the antioxidant enzymes, such as ascorbate peroxidase (APX), guaiacol peroxidase (GuPX), dehydro-ascorbate reductase (DHAR), superoxide dismutase (SOD), glutathione peroxidase (GlPX), glutathione reductase (GR), glutathione S-transferase (GST) and O-acetylserine (thiol) lyase (OASTL), and the contents of antioxidant compounds including reduced glutathione (GSH), total glutathione (GSH+GSSG) and non-protein thiol compounds in O. sativa leaves. In contrast, the enhanced activities of catalase (CAT), DHAR, GR, GST and OASTL, the enhanced ASC-GSH cycle and content of sulfur-containing compounds might provide protective roles against oxidative stress in O. sativa roots under N-limiting conditions. Quantitative real-time PCR (qRT-PCR) analysis indicated that 70% of the enzymes have a consistence between the gene expression pattern and the dynamic of enzyme activity in O. sativa leaves under different N supplies, whereas only 60% of the enzymes have a consistence in O. sativa roots. Our results suggested that the antioxidant system and sulfur metabolism take part in the response of N limiting condition in O. sativa, and this response was different between leaves and roots. Future work should focus on the responsive mechanisms underlying the metabolism of sulfur-containing compounds in O. sativa under nutrient deficient especially N-limiting conditions.

Regulation of arsenate stress by nitric oxide and hydrogen sulfide in Oryza sativa seedlings: Implication of sulfur assimilation, glutathione biosynthesis, and the ascorbate-glutathione cycle and its genes

Seed priming by nitric oxide (NO) and hydrogen sulphide (H2S) in combating against abiotic stress in plants is well documented. However, knowledge of fundamental mechanisms of their crosstalk is scrambled. Therefore, the reported study examined the probable role of NO and H2S in the mitigation of arsenate toxicity (As(V)) in rice seedlings and whether their potential signalling routes crossover. Results report that As(V) toxicity limited shoot and root length growth with more As accumulation in roots. As(V) further caused elevated reactive oxygen species levels, inhibited ascorbate-glutathione cycle enzymes and relative gene expression of its enzymes and thus, causing lipid and protein oxidation. These results correlate with reduced nitric oxide synthase-like and L–cysteine desulfhydrase activity along with endogenous NO and H2S. While, L-NAME or PAG augmented As(V) toxicity, and addition of SNP or NaHS effectively reversed their respective effects. Furthermore, SNP under PAG or NaHS under L-NAME were able to pacify As(V) stress, implicating that endogenous NO and H2S efficiently ameliorate As(V) toxicity but without their shared signaling in rice seedlings.

Utilizing transcriptomics and proteomics to unravel key genes and proteins of Oryza sativa seedlings mediated by selenium in response to cadmium stress

BackgroundCadmium (Cd) pollution has declined crop yields and quality. Selenium (Se) is a beneficial mineral element that protects plants from oxidative damage, thereby improving crop tolerance to heavy metals. The molecular mechanism of Se-induced Cd tolerance in rice (Oryza sativa) is not yet understood. This study aimed to elucidate the beneficial mechanism of Se (1 mg/kg) in alleviating Cd toxicity in rice seedlings.ResultsExogenous selenium addition significantly improved the toxic effect of cadmium stress on rice seedlings, increasing plant height and fresh weight by 20.53% and 34.48%, respectively, and increasing chlorophyll and carotenoid content by 16.68% and 15.26%, respectively. Moreover, the MDA, ·OH, and protein carbonyl levels induced by cadmium stress were reduced by 47.65%, 67.57%, and 56.43%, respectively. Cell wall metabolism, energy cycling, and enzymatic and non-enzymatic antioxidant systems in rice seedlings were significantly enhanced. Transcriptome analysis showed that the expressions of key functional genes psbQ, psbO, psaG, psaD, atpG, and PetH were significantly up-regulated under low-concentration Se treatment, which enhanced the energy metabolism process of photosystem I and photosystem II in rice seedlings. At the same time, the up-regulation of LHCA, LHCB family, and C4H1, PRX, and atp6 functional genes improved the ability of photon capture and heavy metal ion binding in plants. Combined with proteome analysis, the expression of functional proteins OsGSTF1, OsGSTU11, OsG6PDH4, OsDHAB1, CP29, and CabE was significantly up-regulated under Se, which enhanced photosynthesis and anti-oxidative stress mechanism in rice seedlings. At the same time, it regulates the plant hormone signal transduction pathway. It up-regulates the expression response process of IAA, ABA, and JAZ to activate the synergistic effect between each cell rapidly and jointly maintain the homeostasis balance.ConclusionOur results revealed the regulation process of Se-mediated critical metabolic pathways, functional genes, and proteins in rice under cadmium stress. They provided insights into the expression rules and dynamic response process of the Se-mediated plant resistance mechanism. This study provided the theoretical basis and technical support for crop safety in cropland ecosystems and cadmium-contaminated areas.

A non-K+-solubilizing PGPB (Bacillus megaterium) increased K+ deprivation tolerance in Oryza sativa seedlings by up-regulating root K+ transporters

Potassium is one of the principal macronutrients required by all plants, but its mobility is restricted between soil compartments. Numerous studies have shown that Plant Growth Promoting Bacteria (PGPB) can facilitate nutrient uptake. The present work examined the effects of the PGPB (Bacillus megaterium) on rice plants subjected to potassium deprivation. To study only direct effects of B. megaterium, we first checked its lack of capacity to solubilize soil K. Rice plants were provided with 1.5 mM K (100%) or 0.015 mM K (1%) and growth related parameters, nutrient concentrations and gene expression of K+ transporters were determined. After two weeks, the 1% K treatment reduced growth of non-inoculated plants by about 50% compared with the 100% K treatment. However, there was no effect of reduced K nutrition on growth of inoculated plants. The reduction in growth in non-inoculated plants was accompanied by a similar reduction in K+ concentration in both roots and leaves and an overall 80% reduction of the plant potassium concentrations. In inoculated plants a 50% reduction occurred only in leaves. The expression of the K+ transporters HKT1;1, 1;2, 1;5, 2;2, 2;3 and 2;4 was up-regulated by the inoculation of B. megaterium under K deprivation conditions, explaining their higher K tissue concentrations and growth. Thus, the bacterial strain improved plant potassium nutrition without affecting K+ availability in the soil. The results demonstrate the potential of this bacteria for using as a biofertilizer to reduce the amount of potassium fertilizers to be applied in the field.

Enhanced Cd efflux capacity and physiological stress resistance: The beneficial modulations of Metarhizium robertsii on plants under cadmium stress

Due to the high migration capacity in agricultural soil-crop systems, cadmium (Cd) is accumulated in various crops and severely inhibits plant growth. In this study, we showed that, under Cd stress, the plant-symbiotic fungus Metarhizium robertsii reduced Cd accumulation in Arabidopsis thaliana shoots and roots by 21.8 % and 23.8 %, respectively. This is achieved by M. robertsii colonization-induced elevation of Cd efflux capacity via upregulation of three PCR genes, which is confirmed by the fact that the extent to which M. robertsii reduced Cd accumulation in the WT plants was greater than the inactivating mutants of the PCR genes. M. robertsii also alleviated Cd-induced leaf etiolation in A. thaliana by increasing the chlorophyll amount and modified plant physiological status to increase Cd stress tolerance via increasing production of catalase, peroxidase and glutathione and upregulating multiple HIPP proteins involved in sequestration of Cd. Notably, consistent with that in A. thaliana, the colonization of M. robertsii also reduced the Cd accumulation in Oryza sativa seedlings by upregulating the PCR gene OsPCR1, and increased chlorophyll amount and alleviated oxidative stress. Therefore, M. robertsii colonization reduced Cd accumulation in plants, and promoted plant growth and health by elevating Cd efflux capacity and modifying physiological status.

Green synthesis of iron oxide nanoparticles and their ameliorative effect on arsenic stress relief in Oryza sativa seedlings

Nanotechnology has immense potential in the field of agriculture. This study utilized an eco-friendly method to synthesize iron oxide nanoparticles (FeO-NPs) using leaf extract of Adiantum lunulatum. The synthesized FeO-NPs were characterized by UV–visible spectroscopy, FTIR, zeta potential, XRD, EDX and TEM analysis. The nanoparticles were quasi-spherical, with a mean particle size of 5 ± 1 nm (range: 3–10 nm). The 100 mg/L dose of FeO-NPs was further applied in the rice growth medium to check the effect of FeO-NPs on the growth of rice seedlings against arsenic (As) stress. FeO-NPs significantly improved seed germination by 9.8% and 15.4%, respectively, of seeds germinated under 50 μm AsIII and 50 μm AsV stress when compared to seed germinated in only 50 μm AsIII and 50 μm AsV. The phytotoxic effect of AsIII on seed germination, seedling growth, chlorophyll content was more severe than AsV. However, IONP fertigation helps the rice plants to overcome the detrimental effect caused by As exposure. FeO-NPs increased the growth and vigour of the seedlings under As stress. The uptake and translocation of As by seedlings were decreased with IONP fertigation under As stress. The reduced accumulation of As in seedlings treated with FeO-NPs caused a significant (p ≤ 0.05) reduction in oxidative stress and antioxidants activities. All these findings indicated that the synthesis of FeO-NPs using Adiantum lunulatum leaf extract not only produces safe and non-toxic FeO-NPs but these FeO-NPs can be also efficiently improve the rice seedling growth under As stressed condition.

Synergistic action of silicon nanoparticles and indole acetic acid in alleviation of chromium (CrVI) toxicity in Oryza sativa seedlings

The present study investigates ameliorative effect of silicon nanoparticles (SiNPs) and indole acetic acid (IAA) alone and in combination against hexavalent chromium (CrVI) toxicity in rice seedlings. The results of the study revealed protective effects of SiNPs and IAA against CrVI toxicity. The 100 μM of CrVI imposed toxic effects in rice seedlings at morphological, physiological and biochemical levels which coincided with increased level of intracellular CrVI and declined level of endogenous nitric oxide (NO). The CrVI enhanced levels of superoxide radicals (SOR) (59.51% and 50.1% in shoot and root, respectively) and H2O2 (19.5% and 23.69% in shoot and root, respectively). However, when SiNPs and IAA were applied to plants under CrVI stress, they enhanced tolerance and defence mechanisms as manifested in terms of increased biomass, endogenous NO, photosynthetic pigments, and antioxidants level. It was also noticed that CrVI arrested cell cycle at G2/M phase whereas growth was restored as compared to control when SiNPs and IAA were supplemented. Thus, the hypothesis that combined application of SiNPs and IAA will be effective in alleviating CrVI toxicity is validated from the results of this study. Moreover, in SiNPs and IAA-mediated mitigation of CrVI toxicity, endogenous NO has a positive role. The importance of the study will be that the combination of SiNPs and IAA can be utilized against heavy metal stress and even when supplied alone, they will enhance the crop productivity parameters with and without stress conditions.

Growth response of Oryza sativa seedlings to graphene oxide and its variability among genotypes

With the extensive utilization of graphene nanomaterials, they inevitably enter our environment. The potential phytotoxicity and environmental impact of graphene oxide (GO) have recently attracted much attention. We designed the experiment based on seed germination, seedling morphology, physio-biochemical properties, and antioxidant enzyme activities of five rice genotypes (9311, MH63, R527, K866, and Nipponbare) under six concentrations of GO (0, 5, 10, 50, 100, and 150 mg dm-3). We studied the effects of different concentrations of GO on germination index (GI), shoot length (SL) and root length (RL), adventitious root number, shoot and root fresh masses, root/shoot ratio, chlorophyll (Chl) content, malondialdehyde content, and activities of superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD). Graphene oxide treatments significantly enhanced seed germination and root growth and inhibited shoot growth of all genotypes. Furthermore, we found a significant genotype-dependent response to GO treatments. According to the relative increment trend of GI, SL, and RL, root/shoot ratio, antioxidant enzyme activities (CAT, POD, and SOD), and Chl content, 'R527' showed more tolerance to GO treatments than the other four genotypes. The 'MH63' and 'K866' were more sensitive than 'Nipponbare' and '9311'. It indicates that the GO-tolerant genotype might avoid free radicals damage from GO by increased antioxidant enzyme activities. Moreover, we should consider the genotype differences when evaluating the potential phytotoxicity of GO and environmental risk to ecosystems.

Hydrogen sulfide (H2S) underpins the beneficial silicon effects against the copper oxide nanoparticles (CuO NPs) phytotoxicity in Oryza sativa seedlings

Nanoparticle-pollution has associated severe negative effects on crop productivity. Hence, methods are needed to alleviate nano-toxicity in crop plants. The present study aims to evaluate if the exogenous hydrogen sulfide (H2S) application in combination with silicon (Si) could palliate the harmful effects of copper oxide nanoparticles (CuO NPs). Fifteen day-old rice (Oryza sativa L.) seedlings were used as a model plant. The results indicate that simultaneous exogenous addition of 10 μM Si and 100 μM NaHS (as an H2S donor) provided tolerance and enhanced defence mechanism of the rice seedlings against 100 μM CuO NPs. Thus, it was observed in terms of their growth, photosynthetic pigments, antioxidant enzyme activities, the content of non-enzymatic components, chlorophyll fluorescence and up-regulation of antioxidant genes. Si and NaHS stimulated gene expression of silicon (Lsi1 and Lsi2) and auxin (PIN5 and PIN10) transporters. Taken together, data indicate that H2S underpins the beneficial Si effects in rice seedlings against the oxidative stress triggers by CuO NPs, and stimulation of enzymatic components of the ascorbate-glutathione cycle being the main factor for the beneficial effects triggered by the couple of Si and H2S. Therefore, it could be concluded that the simultaneous application of Si and H2S promote the resilience of the rice seedlings against the oxidative stress induced by CuO NPs.

We investigated the phytotoxicity of desert cotton (Aerva javanica) extracts on wild oat and wheat. Aqueous extracts from A. javanica roots, leaves and inflorescences collected from Jeddah and Al-Baha regions, Saudi Arabia were used. Generally, the allelopathic potential of water extracts of A. javanica collected from Jeddah were more in inhibitory to wild oat germination and seedlings growth than those

This glasshouse study aimed to determine the herbicidal activity of allelochemicals 2,4-di-tert-butylphenol (2,4-DTBP) on test weeds (Asystasia gangetica, Eleusine indica, Leptochloa chinensis and Oldenlandia verticillata) and to find the tolerance of test crops (Brassica rapa, Oryza sativa, Zea mays) to 2,4-DTBP. The 2,4-DTBP applied at 7 kg ai/ha inhibited the weeds seedling growth by 15-40 % only, showing its poor post emergence herbicidal activity. In contrast, soil bioassay confirmed pre-emergence herbicidal activity of 2,4-DTBP that reduced the seedling growth of weeds (L. chinensis, E. indica and O. verticillata) by 50- 80 % at 2.5 kg ai/ha but A. gangetica was tolerant to 2,4-DTBP even at 5 kg ai/ha. Crop tolerance test revealed that Zea mays was tolerant to 2,4-DTBP. In contrast, root lengths of transplanted Brassica rapa seedlings and Oryza sativa seedlings were reduced by 10- 15 % at 2,4-DTBP doses of 1.25 to 5 kg ai/ha, 14 days after treatment. However, these two crops seedlings became tolerant to 2,4-DTBP at 5 kg ai/ha, when applied 4 days after transplanting. Thus 2,4-DTBP may be developed as novel pre-emergence natural herbicide, without injuring the crops depending on their growth stages and crop species.

Evaluation of plant probiotic performance of Pseudomonas sp. encapsulated in alginate supplemented with salicylic acid and zinc oxide nanoparticles

Plant growth promoting rhizobacteria (PGPR) are efficient candidates for the application in agricultural field to enhance the crop yield and to suppress the plant diseases. As the changes in agro-climatic conditions negatively affect the soil fertility and functioning of soil microbial community, there are significant demand for the innovative delivery methods for the PGPR to ensure its optimal performance. In the present study, Pseudomonas sp. DN18 has been entrapped in the alginate beads along with the supplemented salicylic acid (SA) and zinc oxide nanoparticles (ZnONPs). This modified formulation was further demonstrated for the IAA production and also antifungal activity against the Sclerotium rolfsii. In addition, superior plant growth promoting and biocontrol properties of the encapsulated Pseudomonas sp. DN18 supplemented with SA and ZnONPs have also been demonstrated on Oryza sativa seedlings by comparing with the free living Pseudomonas sp. DN18. This revealed the agricultural promises of Pseudomonas sp. DN18 encapsulated in a modified delivery system due to its functional superiority and stability over the free living bacteria based formulation.

Proteome-Wide Analyses Reveal the Diverse Functions of Lysine 2-Hydroxyisobutyrylation in Oryza sativa

BackgroundLysine 2-hydroxyisobutyrylation (Khib), a newly identified post-translational modification, is known to regulate transcriptional activity in animals. However, extensive studies of the lysine 2-hydroxyisobutyrylome in plants and animals have yet to be performed.ResultsIn this study, using LC-MS/MS qualitative proteomics strategies, we identified 4163 Khib sites on 1596 modified proteins in rice (Oryza sativa) seedlings. Motif analysis revealed 10 conserved motifs flanking the Khib sites, and subcellular localization analysis revealed that 44% of the Khib proteins are localized in the chloroplast. Gene ontology function, KEGG pathway, and protein domain enrichment analyses revealed that Khib occurs on proteins involved in diverse biological processes and is especially enriched in carbon metabolism and photosynthesis. Among the modified proteins, 20 Khib sites were identified in histone H2A and H2B, while only one site was identified in histone H4. Protein-protein interaction (PPI) network analysis further demonstrated that Khib participates in diverse biological processes including ribosomal activity, biosynthesis of secondary metabolites, and metabolic pathways. In addition, a comparison of lysine 2-hydroxyisobutyrylation, acetylation, and crotonylation in the rice proteome showed that 45 proteins with only 26 common lysine sites are commonly modified by three PTMs. The crosstalk of modified sites and PPI among these PTMs may form a complex network with both similar and different regulatory mechanisms.ConclusionsIn summary, our study comprehensively profiles the lysine 2-hydroxyisobutyrylome in rice and provides a better understanding of its biological functions in plants.

A Comparative Study to Alleviate Arsenite Accumulation in Hydroponically Grown Oryza sativa Seedlings Through Combinations of Se, P and Fe

In the present study, the nine cultivars namely NDR-3112, Swarn Sub-2, Pusa-sugandha, IPB-1, Pant-4, Pant-10, Jalnidhi, Ushar-3 and Mashina Research-2 were screened to select the As tolerant cultivar. Based on accumulation and growth parameters, the tolerant cultivar (cv. Pant 10) of rice was selected for further experiments. Rice cv. Pant 10 was treated with i) As, ii) As+Fe, iii) As+Se, iv) As+Se+P and v) As+P under hydroponic condition for 8d. The application (μg ml-1) of Fe(100) to As(4) and Se(4)+P(6) to As(4), significantly (89% and 73%, respectively) reduced the uptake of As to the shoot without affecting the growth of seedlings. However, increasing the level of P (3 and 6 μg ml-1) alone in As(III) (4 μg ml-1) treatments significantly increased the As accumulation in the shoot, coincided with the decreased growth of rice seedlings. Treatment of As+Fe showed a non-significant reduction in growth relative to As alone, whereas, the seedlings exhibited the higher MDA and H2O2 level at 100 μg ml-1 concentration of Fe. In comparison to Se and P combinations, the Fe was found to be more efficient to significantly reduce the As accumulation. Among all the antioxidants, the activity of SOD and APX was significantly enhanced with the As+Fe(50) at both 4 and 8 days of treatments against As(4). Overall results demonstrate that the application of Fe was more efficient to reduce the uptake of As than Se and P in the rice seedlings.

A new boronic acid reagent for the simultaneous determination of C27-, C28-, and C29-brassinosteroids in plant tissues by chemical labeling-assisted liquid chromatography-mass spectrometry.

Brassinosteroids (BRs) are endogenous plant growth-promoting hormones affecting growth and development during the entire life cycle of plants. Naturally occurring BRs can be classified into C27-, C28-, or C29-BRs based on the nature of the alkyl groups occupying the C-24 position in the side chain of the 5a-cholestane carbon skeleton. However, while C27-BRs exhibit similar bioactivities to C28- and C29-BRs, the biosynthetic pathways of C27-BRs in plants have not yet been clearly characterized. In addition to a lack of biochemical and enzymatic evidence regarding the biosynthetic pathways of C27-BRs, even most of the intermediate compounds on their pathways have not been explored and identified due to the lower endogenous levels of C27-BRs. Therefore, the development of highly sensitive analytical methods is essential for studying the biosynthetic pathways and physiological functions of C27-BRs. Accordingly, this study establishes qualitative and quantitative methods for identifying and detecting C27-, C28-, and C29-BRs using a newly synthesized boronic acid reagent denoted as 2-methyl-4-phenylaminomethylphenylboronic acid (2-methyl-4-PAMBA) in conjunction with liquid chromatography-mass spectrometry (LC-MS). Labeling with 2-methyl-4-PAMBA provides derivatives with excellent stability, and the detection sensitivities of BRs, particularly for C27-BRs, are dramatically improved. The limits of detection (with a signal-to-noise ratio of 3) for six BRs, including 2 C27-BRs (28-norCS and 28-norBL), 3 C28-BRs (CS, BL, and TY), and a single C29-BR (28-homoBL), are found to be 0.10-1.68pg/mL after labeling with 2-methyl-4-PAMBA. Finally, the proposed analytical method is successfully applied for the detection of endogenous BRs in small mass samples of Oryza sativa seedlings, Rape flowers, Arabidopsis shoots, and Arabidopsis flowers. In addition, a method for profiling potential BRs in plants is also developed using LC-MS in multiple reaction monitoring scan mode assisted by 2-methyl-4-PAMBA and 2-methyl-4-PAMBA-d5 labeling. The developed method is able to identify 10 potential BRs in a Rape flower extract. The proposed quantitative and qualitative methods established by 2-methyl-4-PAMBA labeling are helpful for facilitating an understanding of the physiological functions and biosynthetic pathways of BRs, particularly for C27-BRs. Graphical abstract.

Correction to: Cold plasma treatment and exogenous salicylic acid priming enhances salinity tolerance of Oryza sativa seedlings.

Figures3 and 6 in the published online version of the paper have been replaced with the incorrect artworks which has no relevance to the study. The correct version of the figures are shown below.

Cold plasma treatment and exogenous salicylic acid priming enhances salinity tolerance of Oryza sativa seedlings.

The present study was designed to highlight the effects of cold plasma (10kV) treatment and priming with 2mM salicylic acid (SA) and their combination (10kV of plasma + 2mM SA) on the physiological parameters and metabolism of two cultivars of Oryza sativa, i.e., Zhu Liang You 06 (ZY) and Qian You No. 1 (QY), under salinity stress (150mM NaCl) and normal growth condition (0mM NaCl). Seed germination and seedling growth were enhanced by SA priming and cold plasma treatment either alone or in combination under salinity stress. Photosynthetic pigments, photosynthetic gas exchange, and chlorophyll fluorescence were improved by cold plasma treatment and SA priming under salinity stress as compared to the untreated seeds. The activities of antioxidant enzymes were significantly improved by the combination of SA priming and cold plasma treatment in both cultivars under salinity stress. There were rapid changes in the cellular content of sodium (Na+) and calcium (Ca+), where the plants grown under saline conditions accumulate more Na+ and less Ca+ contents resulting in ionic imbalances. Interestingly, cold plasma and SA treatments diminished this action by reducing Na+ accumulation and increasing K+ and Ca+ contents in the plant cell under salinity stress. The activities of enzymes involved in secondary metabolism assimilation were up-regulated with cold plasma and SA priming either alone or combination under salinity stress. An increase in reactive oxygen species (ROS) accumulation and malondialdehyde (MDA) content was also observed under salinity stress condition. On contrast, seed treated with SA and plasma alone or combined resulted in a significant decrease in ROS and MDA contents under salinity stress. Our results indicated that SA priming and cold plasma treatment either alone or combined improved plant uptake of nutrients in both cultivars under stress conditions. The ultrastructural changes were observed to be more prominent in ZY than QY cultivar. Plants without SA priming or cold plasma treatments have a big vacuole due to the movement of ions into the vacuole directly from the apoplast into the vacuole through membrane vesiculation leading to membrane destabilization. However, SA priming and cold plasma treatment alone or combined helped the plants to recover their cell turgidity under salinity stress.

A rapid LC-MS method for qualitative and quantitative profiling of plant apocarotenoids

Carotenoid cleavage products (apocarotenoids; APOs) exert important biological functions in light perception and as vitamin A source, signaling molecules, hormone precursors, pigments and volatiles. However, an analytical method that allows simultaneous profiling of these diverse compounds is still missing. We developed an efficient method to analyze APOs present in plant tissues, which is based on ultra-high performance liquid chromatographic separation and high-resolution hybrid quadrupole-Orbitrap (Q-Orbitrap) mass spectrometry (MS). Our approach allowed unambiguous identification and quantification of volatile and non-volatile APOs in a single run. Modified sample preparation and optimized ultra-high performance liquid chromatography (UHPLC)-MS parameters permitted the measurement of APOs in Oryza sativa seedlings and Spinacia oleracea leaves, unraveling 20 endogenous APOs with chain lengths ranging from C10 to C30, confirmed by high-resolution MS, MS/MS data and using synthetic standards. Our experimentation demonstrates that the usage of methanol with 0.1% butylated hydroxytoluene facilitates the extraction of both short-chain and long-chain APOs from plant materials. In addition, our validated analytical method allows the quantitative analysis of APOs with a wide content range from 2.5 pg/mg to 10 ng/mg dried weight. The adoption of the analytical protocol, as described in this study, realizes the measurement of volatile APOs by using a LC-MS method, hence, allowing informative and reliable profiling of APOs, which is important for determining the content of these compounds in food and crucial for understanding their function and metabolism in plants.

Microarray-based expression analysis of phytohormone-related genes in rice seedlings during cyanide metabolism.

Plants exhibit highly coordinated, dynamic reactions to various abiotic stressors. As cyanide is a non-essential element for plant growth, entry inside plants can exert toxicity at multiple levels. In plant, hormone plays a pivot role under stress conditions. The fluctuations of stress-responsive hormones help in altering cellular dynamics and hence play a central role in coordination and adaptation growth responses under stress. This study focusses on uptake of cyanide in Oryza sativa seedlings and its effect on physiological and on genetic level. Microarray approach has been focused on transcriptional profiling of genes which are involved in systemic acquired resistance for cyanide. Our study shows that the change in different hormonal contents maintained almost the same pattern in roots and shoots upon CN exposure, except for SA. However, the hormone-related gene expression pattern conducted by microarray analysis was inconsistent in both plant materials (root/shoots). Comparison of gene expression between root/shoots showed a total of 29 in roots and 16 DEGs, respectively, indicating that hormone-related genes in roots were more responsive than those in shoots during exogenous CN metabolism. These results showed a remarkable change at transcript level of plant hormone-related genes, including biosynthesis, degradation, induction, and signal transduction under cyanide stress.

Isolation of toxic metal-tolerant bacteria from soil and examination of their bioaugmentation potentiality by pot studies in cadmium- and lead-contaminated soil.

Heavy metals, also regarded as toxic metals, are the important environmental pollutants that affect all forms of life. Accumulation of toxic metals in plants results in various biochemical, physiological and structural disturbances, leading to inhibited growth and sometimes plant death. Toxic metal contamination disturbs the soil ecology as well as the agricultural productivity. Several indigenous microbes can withstand the effect of toxic metal and play a vital role in the revival of tarnished soil. In the present study, soil samples were collected from contaminated crop field of Cachar district of Assam, India. Segregation, enumeration and identification of bacteria from soil samples were performed. Among all the tested isolates, very few were able to withstand a high concentration of Cd and Pb in nutrient agar plates. Toxic metal-tolerant bacteria were identified as Pseudomonas aeruginosa and Bacillus cereus. The isolates having a higher tolerance for Cd and Pb were taken into consideration for pot studies. P. aeruginosa strain SN4 and strain SN5 showed significant results at Cd- and Pb-contaminated soil, evidenced by the healthy growth of Oryza sativa seedlings. However, B. cereus strain SN6 showed high tolerance towards Cd and Pb, but pot experimental studies showed adverse effects on seedling germination and shoot growth of O. sativa. P. aeruginosa strains were significantly able to reduce the negative impact of Cd and Pb in the soil, thus finding an alternative in removal, recovery and remediation of toxic metal-contaminated crop field.

Effects of silver nanocolloids on plant complex type N-glycans in Oryza sativa roots

Silver nanomaterials have been mainly developed as antibacterial healthcare products worldwide, because of their antibacterial activity. However, there is little data regarding the potential risks and effects of large amounts of silver nanomaterials on plants. In contrast, N-glycans play important roles in various biological phenomena, and their structures and expressions are sensitive to ambient environmental changes. Therefore, to assesse the effects of silver nanomaterials, we focused on the correlation between N-glycans and the effects of silver nanomaterials in plants and analyzed N-glycan structures in Oryza sativa seedlings exposed to silver nanocolloids (SNCs). The phenotype analysis showed that the shoot was not affected by any SNC concentrations, whereas the high SNC exposed root was seriously damaged. Therefore, we performed comparative N-glycan analysis of roots. As a result, five of total N-glycans were significantly increased in SNC exposed roots, of which one was a free-N-glycan with one beta-N-acetylglucosamine residue at the reducing end. Our results suggest that the transition of plant complex type N-glycans, including free-N-glycans, was caused by abnormalities in O. sativa development, and free-N-glycan itself has an important role in plant development. This study originally adapted glycome transition analysis to environmental toxicology and proposed a new category called “Environmental glycobiology”.